Clone Sequence Records
BS11479.3prime Sequence
873 bp (802 high quality bases) assembled on 2006-05-08
> BS11479.3prime
ATGGTCTAGAAAGCTTTTAGGAGGACGAGCTGTAGCTGGACGAAGAACCC
GAGGATCCCGACGAGGATCCCGAGGAGTAGGACGACGAGCTGCTAGGATG
GTACGAGCTGTAGGCCAGGTTCTGCGAGTCCCAACGGGCATAGGGACCTC
CGCTCATGGGCTCCCAGCTGCTGGGATCGTAGGATGAGGCGGTGGTGCTG
GGCACTCCGTATTCGCTGGCCGGAACTGGGGCGGGCATGGGCACCATGTT
CATCTTCATGCCTCCCAACTTCTGGATAAGGTTGTAGATCAGGAAGCCCA
GCACCAGCTTGATGGCAATCTTGGACAGAATCAGAGCCTTGGTGGCCTTC
AGACCGATCAGAGCCAGCAAGATGGGCATGATCACCTTCAGCTTGAACTT
CATCAGCAGCAGCAGGGGCAGGAACAGCTTGTCCTTGTTCTTCTTCTCAG
CGCGACCCTCATCCTTGGGCAACTCCAGATCAAAACCGCGATCCGAGCGA
TAGGTCACCACGGAACCAGCGAAGAAGGTCTGTGGCAGCTGCAACCTCAT
CTCGTTGGTGTTCAGAATGCGGCCCAGGCGGTCCACAATGACCTTGTCGA
TTACATCGTCACCCAGGGCGCGTCCGCTGACCTCCTCCTCCACATTGGCT
ACCGTGTCCAGGTAGGTGAGCACCTTCTCCTTCAGGCAATGCATCGCATT
GGCATGGAAGCACTTATCCACAATTGTCGAGATCAGCTCGTCGGAGCTGT
GGATCCGCGGGGTCACCGCGTTCTCGATGGCAGCACCGGACACGGATGTG
GAGGCCACCAGCAGCAGCGCACAACCGAACGCGAGCAAGGACGTGGAGCG
GAAAGCCATGTCGACTGATAACT
BS11479.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15188-PA | 843 | Osi20-RA | 1..843 | 859..17 | 4215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:35:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi20-RA | 1264 | CG15188-RA | 94..937 | 859..16 | 4220 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:35:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6340656..6341097 | 457..16 | 2210 | 100 | Minus |
3R | 32079331 | 3R | 6340188..6340593 | 859..454 | 2030 | 100 | Minus |
Blast to na_te.dros performed 2015-02-02 20:35:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1507..1581 | 355..428 | 138 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2407..2478 | 357..428 | 126 | 63.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2300..2370 | 358..428 | 121 | 63.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2559..2655 | 331..428 | 118 | 59.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2375 | 365..430 | 114 | 63.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6800 | 365..428 | 113 | 64.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2455..2523 | 357..428 | 110 | 63.9 | Plus |
BS11479.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:27 Download gff for
BS11479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi20-PA | 1..843 | 17..859 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:41:29 Download gff for
BS11479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15188-PA | 1..843 | 17..859 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:25:23 Download gff for
BS11479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi20-RA | 90..937 | 16..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:16:44 Download gff for
BS11479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi20-RA | 90..937 | 16..867 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:16:44 Download gff for
BS11479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6340184..6340590 | 457..867 | 99 | -> | Minus |
3R | 6340657..6341097 | 16..456 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:25:23 Download gff for
BS11479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2165906..2166312 | 457..867 | 99 | -> | Minus |
arm_3R | 2166379..2166819 | 16..456 | 100 | | Minus |
BS11479.5prime Sequence
873 bp (872 high quality bases) assembled on 2006-05-08
> BS11479.5prime
GAAGTTATCAGTCGACATGGCTTTCCGCTCCACGTCCTTGCTCGCGTTCG
GTTGTGCGCTGCTGCTGGTGGCCTCCACATCCGTGTCCGGTGCTGCCATC
GAGAACGCGGTGACCCCGCGGATCCACAGCTCCGACGAGCTGATCTCGAC
AATTGTGGATAAGTGCTTCCATGCCAATGCGATGCATTGCCTGAAGGAGA
AGGTGCTCACCTACCTGGACACGGTAGCCAATGTGGAGGAGGAGGTCAGC
GGACGCGCCCTGGGTGACGATGTAATCGACAAGGTCATTGTGGACCGCCT
GGGCCGCATTCTGAACACCAACGAGATGAGGTTGCAGCTGCCACAGACCT
TCTTCGCTGGTTCCGTGGTGACCTATCGCTCGGATCGCGGTTTTGATCTG
GAGTTGCCCAAGGATGAGGGTCGCGCTGAGAAGAAGAACAAGGACAAGCT
GTTCCTGCCCCTGCTGCTGCTGATGAAGTTCAAGCTGAAGGTGATCATGC
CCATCTTGCTGGCTCTGATCGGTCTGAAGGCCACCAAGGCTCTGATTCTG
TCCAAGATTGCCATCAAGCTGGTGCTGGGCTTCCTGATCTACAACCTTAT
CCAGAAGTTGGGAGGCATGAAGATGAACATGGTGCCCATGCCCGCCCCAG
TTCCGGCCAGCGAATACGGAGTGCCCAGCACCACCGCCTCATCCTACGAT
CCCAGCAGCTGGGAGCCCATGAGCGGAGGTCCCTATGCCCGTTGGGACTC
GCAGAACCTGGCCTACAGCTCGTACCATCCTAGCAGCTCGTCGTCCTACT
CCTCGGGATCCTCGTCGGGATCCTCGGGTTCTTCGTCCAGCTACAGCTCG
TCCTCCTAAAAGCTTTCTAGACC
BS11479.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15188-PA | 843 | Osi20-RA | 1..843 | 17..859 | 4215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:30:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi20-RA | 1264 | CG15188-RA | 94..937 | 17..860 | 4220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:30:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6340656..6341097 | 419..860 | 2210 | 100 | Plus |
3R | 32079331 | 3R | 6340188..6340593 | 17..422 | 2030 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 00:30:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1507..1581 | 521..448 | 138 | 66.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2407..2478 | 519..448 | 126 | 63.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2300..2370 | 518..448 | 121 | 63.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2559..2655 | 545..448 | 118 | 59.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2375 | 511..446 | 114 | 63.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6800 | 511..448 | 113 | 64.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2455..2523 | 519..448 | 110 | 63.9 | Minus |
BS11479.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:28 Download gff for
BS11479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi20-PA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:41:30 Download gff for
BS11479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15188-PA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:34:13 Download gff for
BS11479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi20-RA | 90..937 | 9..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:04:33 Download gff for
BS11479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi20-RA | 90..937 | 9..860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:04:33 Download gff for
BS11479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6340184..6340590 | 9..419 | 99 | -> | Plus |
3R | 6340657..6341097 | 420..860 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:34:13 Download gff for
BS11479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2165906..2166312 | 9..419 | 99 | -> | Plus |
arm_3R | 2166379..2166819 | 420..860 | 100 | | Plus |
BS11479.complete Sequence
875 bp assembled on 2006-11-01
GenBank Submission: FJ636885
> BS11479.complete
GAAGTTATCAGTCGACATGGCTTTCCGCTCCACGTCCTTGCTCGCGTTCG
GTTGTGCGCTGCTGCTGGTGGCCTCCACATCCGTGTCCGGTGCTGCCATC
GAGAACGCGGTGACCCCGCGGATCCACAGCTCCGACGAGCTGATCTCGAC
AATTGTGGATAAGTGCTTCCATGCCAATGCGATGCATTGCCTGAAGGAGA
AGGTGCTCACCTACCTGGACACGGTAGCCAATGTGGAGGAGGAGGTCAGC
GGACGCGCCCTGGGTGACGATGTAATCGACAAGGTCATTGTGGACCGCCT
GGGCCGCATTCTGAACACCAACGAGATGAGGTTGCAGCTGCCACAGACCT
TCTTCGCTGGTTCCGTGGTGACCTATCGCTCGGATCGCGGTTTTGATCTG
GAGTTGCCCAAGGATGAGGGTCGCGCTGAGAAGAAGAACAAGGACAAGCT
GTTCCTGCCCCTGCTGCTGCTGATGAAGTTCAAGCTGAAGGTGATCATGC
CCATCTTGCTGGCTCTGATCGGTCTGAAGGCCACCAAGGCTCTGATTCTG
TCCAAGATTGCCATCAAGCTGGTGCTGGGCTTCCTGATCTACAACCTTAT
CCAGAAGTTGGGAGGCATGAAGATGAACATGGTGCCCATGCCCGCCCCAG
TTCCGGCCAGCGAATACGGAGTGCCCAGCACCACCGCCTCATCCTACGAT
CCCAGCAGCTGGGAGCCCATGAGCGGAGGTCCCTATGCCCGTTGGGACTC
GCAGAACCTGGCCTACAGCTCGTACCATCCTAGCAGCTCGTCGTCCTACT
CCTCGGGATCCTCGTCGGGATCCTCGGGTTCTTCGTCCAGCTACAGCTCG
TCCTCCTAAAAGCTTTCTAGACCAT
BS11479.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:07:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi20-RA | 843 | CG15188-PA | 1..843 | 17..859 | 4215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi20-RA | 1264 | CG15188-RA | 94..937 | 17..860 | 4220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6340656..6341097 | 419..860 | 2210 | 100 | Plus |
3R | 32079331 | 3R | 6340188..6340593 | 17..422 | 2030 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 01:07:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1507..1581 | 521..448 | 138 | 66.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2407..2478 | 519..448 | 126 | 63.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2300..2370 | 518..448 | 121 | 63.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2559..2655 | 545..448 | 118 | 59.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2375 | 511..446 | 114 | 63.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6800 | 511..448 | 113 | 64.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2455..2523 | 519..448 | 110 | 63.9 | Minus |
BS11479.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:26 Download gff for
BS11479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi20-RA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:31 Download gff for
BS11479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi20-RA | 88..935 | 9..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:39:49 Download gff for
BS11479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi20-RA | 94..934 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:27 Download gff for
BS11479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi20-RA | 88..935 | 9..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:17 Download gff for
BS11479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi20-RA | 94..934 | 17..857 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:17 Download gff for
BS11479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6340188..6340590 | 17..419 | 100 | -> | Plus |
3R | 6340657..6341094 | 420..857 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:39:49 Download gff for
BS11479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2165910..2166312 | 17..419 | 100 | -> | Plus |
arm_3R | 2166379..2166816 | 420..857 | 100 | | Plus |
BS11479.pep Sequence
Translation from 16 to 858
> BS11479.pep
MAFRSTSLLAFGCALLLVASTSVSGAAIENAVTPRIHSSDELISTIVDKC
FHANAMHCLKEKVLTYLDTVANVEEEVSGRALGDDVIDKVIVDRLGRILN
TNEMRLQLPQTFFAGSVVTYRSDRGFDLELPKDEGRAEKKNKDKLFLPLL
LLMKFKLKVIMPILLALIGLKATKALILSKIAIKLVLGFLIYNLIQKLGG
MKMNMVPMPAPVPASEYGVPSTTASSYDPSSWEPMSGGPYARWDSQNLAY
SSYHPSSSSSYSSGSSSGSSGSSSSYSSSS*
BS11479.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi20-PA | 280 | CG15188-PA | 1..280 | 1..280 | 1401 | 100 | Plus |
Osi9-PA | 233 | CG15592-PA | 1..181 | 8..185 | 175 | 23.9 | Plus |
Osi7-PA | 288 | CG1153-PA | 6..264 | 9..279 | 172 | 21.1 | Plus |