Clone BS11479 Report

Search the DGRC for BS11479

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:114
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptOsi20-RA
Protein status:BS11479.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11479.3prime Sequence

873 bp (802 high quality bases) assembled on 2006-05-08

> BS11479.3prime
ATGGTCTAGAAAGCTTTTAGGAGGACGAGCTGTAGCTGGACGAAGAACCC
GAGGATCCCGACGAGGATCCCGAGGAGTAGGACGACGAGCTGCTAGGATG
GTACGAGCTGTAGGCCAGGTTCTGCGAGTCCCAACGGGCATAGGGACCTC
CGCTCATGGGCTCCCAGCTGCTGGGATCGTAGGATGAGGCGGTGGTGCTG
GGCACTCCGTATTCGCTGGCCGGAACTGGGGCGGGCATGGGCACCATGTT
CATCTTCATGCCTCCCAACTTCTGGATAAGGTTGTAGATCAGGAAGCCCA
GCACCAGCTTGATGGCAATCTTGGACAGAATCAGAGCCTTGGTGGCCTTC
AGACCGATCAGAGCCAGCAAGATGGGCATGATCACCTTCAGCTTGAACTT
CATCAGCAGCAGCAGGGGCAGGAACAGCTTGTCCTTGTTCTTCTTCTCAG
CGCGACCCTCATCCTTGGGCAACTCCAGATCAAAACCGCGATCCGAGCGA
TAGGTCACCACGGAACCAGCGAAGAAGGTCTGTGGCAGCTGCAACCTCAT
CTCGTTGGTGTTCAGAATGCGGCCCAGGCGGTCCACAATGACCTTGTCGA
TTACATCGTCACCCAGGGCGCGTCCGCTGACCTCCTCCTCCACATTGGCT
ACCGTGTCCAGGTAGGTGAGCACCTTCTCCTTCAGGCAATGCATCGCATT
GGCATGGAAGCACTTATCCACAATTGTCGAGATCAGCTCGTCGGAGCTGT
GGATCCGCGGGGTCACCGCGTTCTCGATGGCAGCACCGGACACGGATGTG
GAGGCCACCAGCAGCAGCGCACAACCGAACGCGAGCAAGGACGTGGAGCG
GAAAGCCATGTCGACTGATAACT

BS11479.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG15188-PA 843 Osi20-RA 1..843 859..17 4215 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:35:13
Subject Length Description Subject Range Query Range Score Percent Strand
Osi20-RA 1264 CG15188-RA 94..937 859..16 4220 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:35:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6340656..6341097 457..16 2210 100 Minus
3R 32079331 3R 6340188..6340593 859..454 2030 100 Minus
Blast to na_te.dros performed 2015-02-02 20:35:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1507..1581 355..428 138 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2407..2478 357..428 126 63.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2300..2370 358..428 121 63.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2559..2655 331..428 118 59.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2375 365..430 114 63.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6800 365..428 113 64.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2455..2523 357..428 110 63.9 Plus

BS11479.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:27 Download gff for BS11479.3prime
Subject Subject Range Query Range Percent Splice Strand
Osi20-PA 1..843 17..859 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:41:29 Download gff for BS11479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15188-PA 1..843 17..859 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:25:23 Download gff for BS11479.3prime
Subject Subject Range Query Range Percent Splice Strand
Osi20-RA 90..937 16..867 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:16:44 Download gff for BS11479.3prime
Subject Subject Range Query Range Percent Splice Strand
Osi20-RA 90..937 16..867 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:16:44 Download gff for BS11479.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6340184..6340590 457..867 99 -> Minus
3R 6340657..6341097 16..456 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:25:23 Download gff for BS11479.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2165906..2166312 457..867 99 -> Minus
arm_3R 2166379..2166819 16..456 100   Minus

BS11479.5prime Sequence

873 bp (872 high quality bases) assembled on 2006-05-08

> BS11479.5prime
GAAGTTATCAGTCGACATGGCTTTCCGCTCCACGTCCTTGCTCGCGTTCG
GTTGTGCGCTGCTGCTGGTGGCCTCCACATCCGTGTCCGGTGCTGCCATC
GAGAACGCGGTGACCCCGCGGATCCACAGCTCCGACGAGCTGATCTCGAC
AATTGTGGATAAGTGCTTCCATGCCAATGCGATGCATTGCCTGAAGGAGA
AGGTGCTCACCTACCTGGACACGGTAGCCAATGTGGAGGAGGAGGTCAGC
GGACGCGCCCTGGGTGACGATGTAATCGACAAGGTCATTGTGGACCGCCT
GGGCCGCATTCTGAACACCAACGAGATGAGGTTGCAGCTGCCACAGACCT
TCTTCGCTGGTTCCGTGGTGACCTATCGCTCGGATCGCGGTTTTGATCTG
GAGTTGCCCAAGGATGAGGGTCGCGCTGAGAAGAAGAACAAGGACAAGCT
GTTCCTGCCCCTGCTGCTGCTGATGAAGTTCAAGCTGAAGGTGATCATGC
CCATCTTGCTGGCTCTGATCGGTCTGAAGGCCACCAAGGCTCTGATTCTG
TCCAAGATTGCCATCAAGCTGGTGCTGGGCTTCCTGATCTACAACCTTAT
CCAGAAGTTGGGAGGCATGAAGATGAACATGGTGCCCATGCCCGCCCCAG
TTCCGGCCAGCGAATACGGAGTGCCCAGCACCACCGCCTCATCCTACGAT
CCCAGCAGCTGGGAGCCCATGAGCGGAGGTCCCTATGCCCGTTGGGACTC
GCAGAACCTGGCCTACAGCTCGTACCATCCTAGCAGCTCGTCGTCCTACT
CCTCGGGATCCTCGTCGGGATCCTCGGGTTCTTCGTCCAGCTACAGCTCG
TCCTCCTAAAAGCTTTCTAGACC

BS11479.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG15188-PA 843 Osi20-RA 1..843 17..859 4215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:30:58
Subject Length Description Subject Range Query Range Score Percent Strand
Osi20-RA 1264 CG15188-RA 94..937 17..860 4220 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:30:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6340656..6341097 419..860 2210 100 Plus
3R 32079331 3R 6340188..6340593 17..422 2030 100 Plus
Blast to na_te.dros performed 2015-02-10 00:30:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1507..1581 521..448 138 66.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2407..2478 519..448 126 63.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2300..2370 518..448 121 63.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2559..2655 545..448 118 59.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2375 511..446 114 63.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6800 511..448 113 64.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2455..2523 519..448 110 63.9 Minus

BS11479.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:28 Download gff for BS11479.5prime
Subject Subject Range Query Range Percent Splice Strand
Osi20-PA 1..843 17..859 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:41:30 Download gff for BS11479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15188-PA 1..843 17..859 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:34:13 Download gff for BS11479.5prime
Subject Subject Range Query Range Percent Splice Strand
Osi20-RA 90..937 9..860 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:04:33 Download gff for BS11479.5prime
Subject Subject Range Query Range Percent Splice Strand
Osi20-RA 90..937 9..860 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:04:33 Download gff for BS11479.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6340184..6340590 9..419 99 -> Plus
3R 6340657..6341097 420..860 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:34:13 Download gff for BS11479.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2165906..2166312 9..419 99 -> Plus
arm_3R 2166379..2166819 420..860 100   Plus

BS11479.complete Sequence

875 bp assembled on 2006-11-01

GenBank Submission: FJ636885

> BS11479.complete
GAAGTTATCAGTCGACATGGCTTTCCGCTCCACGTCCTTGCTCGCGTTCG
GTTGTGCGCTGCTGCTGGTGGCCTCCACATCCGTGTCCGGTGCTGCCATC
GAGAACGCGGTGACCCCGCGGATCCACAGCTCCGACGAGCTGATCTCGAC
AATTGTGGATAAGTGCTTCCATGCCAATGCGATGCATTGCCTGAAGGAGA
AGGTGCTCACCTACCTGGACACGGTAGCCAATGTGGAGGAGGAGGTCAGC
GGACGCGCCCTGGGTGACGATGTAATCGACAAGGTCATTGTGGACCGCCT
GGGCCGCATTCTGAACACCAACGAGATGAGGTTGCAGCTGCCACAGACCT
TCTTCGCTGGTTCCGTGGTGACCTATCGCTCGGATCGCGGTTTTGATCTG
GAGTTGCCCAAGGATGAGGGTCGCGCTGAGAAGAAGAACAAGGACAAGCT
GTTCCTGCCCCTGCTGCTGCTGATGAAGTTCAAGCTGAAGGTGATCATGC
CCATCTTGCTGGCTCTGATCGGTCTGAAGGCCACCAAGGCTCTGATTCTG
TCCAAGATTGCCATCAAGCTGGTGCTGGGCTTCCTGATCTACAACCTTAT
CCAGAAGTTGGGAGGCATGAAGATGAACATGGTGCCCATGCCCGCCCCAG
TTCCGGCCAGCGAATACGGAGTGCCCAGCACCACCGCCTCATCCTACGAT
CCCAGCAGCTGGGAGCCCATGAGCGGAGGTCCCTATGCCCGTTGGGACTC
GCAGAACCTGGCCTACAGCTCGTACCATCCTAGCAGCTCGTCGTCCTACT
CCTCGGGATCCTCGTCGGGATCCTCGGGTTCTTCGTCCAGCTACAGCTCG
TCCTCCTAAAAGCTTTCTAGACCAT

BS11479.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:07:46
Subject Length Description Subject Range Query Range Score Percent Strand
Osi20-RA 843 CG15188-PA 1..843 17..859 4215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:47
Subject Length Description Subject Range Query Range Score Percent Strand
Osi20-RA 1264 CG15188-RA 94..937 17..860 4220 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6340656..6341097 419..860 2210 100 Plus
3R 32079331 3R 6340188..6340593 17..422 2030 100 Plus
Blast to na_te.dros performed 2014-11-28 01:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1507..1581 521..448 138 66.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2407..2478 519..448 126 63.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2300..2370 518..448 121 63.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2559..2655 545..448 118 59.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2375 511..446 114 63.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6800 511..448 113 64.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2455..2523 519..448 110 63.9 Minus

BS11479.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:26 Download gff for BS11479.complete
Subject Subject Range Query Range Percent Splice Strand
Osi20-RA 1..843 17..859 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:31 Download gff for BS11479.complete
Subject Subject Range Query Range Percent Splice Strand
Osi20-RA 88..935 9..860 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:39:49 Download gff for BS11479.complete
Subject Subject Range Query Range Percent Splice Strand
Osi20-RA 94..934 17..857 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:27 Download gff for BS11479.complete
Subject Subject Range Query Range Percent Splice Strand
Osi20-RA 88..935 9..860 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:17 Download gff for BS11479.complete
Subject Subject Range Query Range Percent Splice Strand
Osi20-RA 94..934 17..857 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:17 Download gff for BS11479.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6340188..6340590 17..419 100 -> Plus
3R 6340657..6341094 420..857 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:39:49 Download gff for BS11479.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2165910..2166312 17..419 100 -> Plus
arm_3R 2166379..2166816 420..857 100   Plus

BS11479.pep Sequence

Translation from 16 to 858

> BS11479.pep
MAFRSTSLLAFGCALLLVASTSVSGAAIENAVTPRIHSSDELISTIVDKC
FHANAMHCLKEKVLTYLDTVANVEEEVSGRALGDDVIDKVIVDRLGRILN
TNEMRLQLPQTFFAGSVVTYRSDRGFDLELPKDEGRAEKKNKDKLFLPLL
LLMKFKLKVIMPILLALIGLKATKALILSKIAIKLVLGFLIYNLIQKLGG
MKMNMVPMPAPVPASEYGVPSTTASSYDPSSWEPMSGGPYARWDSQNLAY
SSYHPSSSSSYSSGSSSGSSGSSSSYSSSS*

BS11479.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:08
Subject Length Description Subject Range Query Range Score Percent Strand
Osi20-PA 280 CG15188-PA 1..280 1..280 1401 100 Plus
Osi9-PA 233 CG15592-PA 1..181 8..185 175 23.9 Plus
Osi7-PA 288 CG1153-PA 6..264 9..279 172 21.1 Plus