Clone Sequence Records
BS11480.complete Sequence
1811 bp assembled on 2009-12-07
GenBank Submission: KX803497
> BS11480.complete
GAAGTTATCAGTCGACATGTACATTAGGATAGGATTGAATAGTTTGATAT
CCGTGGTGATTGTCATCCTGGTGGCAGTCTATATCTACCGGTATCCGGAC
GGAAATGCTGGCAAAAAGAAGGCGTCCAGGAGACCGCCAAATCCGGAGGA
TCCACTGCCGCCCTCCAATTCGCCGCTCCATCGATTCTCCCGGGCGGCCA
TTTGCTCCGACAGCGATGTGTGCAGCCAATTGGCCAAAAAAGTCCTGGAG
AATGGAGGAAGTGCTGTGGATGGCGCCTTGGCTGCTCTCATTTGCAACGG
ACTCATCGGGATGCAGAGCATGGGCATCGGTGGCGGCATGGTGATGAATG
TTTATGTGGCCAAGGAGAACAAATCCTACAGCATTCTGGCCAGGGAAATG
GCGCCGCTGGCATTGCGTGCGGATAACTTCTCGTCATTTCGCGATGAGCA
GGATTTCAAGAGATCCGGATGGTCCATTGCCGTGCCAGCTGAATTGGCCG
GTTATGCGGTGGCCCACCAGAGATTCGGGCGGCTAAAGTGGAAGGATTTG
GTGCTGCCAACTTTGGAATTGTGTCGTCGTGGCTATCGATTGTATAAGCA
CCAGTATGATGCGCTCATACTCAATCAGGACATGATCAGGGCCGATTCCG
GCCTACGCCGGATGTTCATCGATCCCGACACCGGGCGCTTCTGGCCATTG
GGTCATCTCATTCGCCCTGCGGCTCAATTGTGCAACACCTACGATCGGTT
GGCCAACGAGGGACCACTCAGTTTCTACCGCGGATCTATCGCCGATGATC
TGCTGGCCGACTTGAAGGACGCGGGCAGTGCAATAACTAAGGAAGACCTC
AACCAAGCGCACGCCAAATTGAGTAGCGCCATTGTGATGCCACTGGATGA
GTATGATCTCCATTTGACTCCTCCACCTGGAAGTGGTCACGTTCTCGGCT
TCATAATGAACATACTAAAGGAGTTCCGGGCGGAATTCTCAAGAGCCGGA
ACTATGAGCCCACGTCAAATCCATTTGATGGTCGAGGCAATGAAGTTTGG
ATTCGTCAAGCGATGGCAACTGGATGAATCCGCGAGCGAAGAGCTTTTGT
CGAATTTGACCAGTCATGAATTGGCAAAATCCGTGGCCAGGCAAATTAAC
CACACACACACCTTTAACCGACCAGAGTTCTATGGAGCTTCACCTGGAAT
TCAAATACGTGATGAGCACGGCACAGCGCACACTTCAGTGCTCCATGGAA
ACGATGCAGTTTCAGTGACAAGCTCCATCAATTTCTATTTTGGCAGTGGA
CGAACTGGCAGGCGCACAGGTGTCATCTTTAACAATGCCATGTCGGATTT
CTCCATCGAACAGCTCAAGAACTACTTCGATCTGCCCTTCGTGCCTGGCA
CGAATGGTGTAGCTCCTGCCGCCCGTCCCATGTCCTCCATGTGTCCAGTG
ATTGTCACGGAACGCGCCACTGGCAACGTTCGCTTGGTTGTGGGTGCCGC
TGGCGGTACCAAAATAATCTCTGCCCTCTCTCCCCTCCTCGTGCGCATCC
TGTGGCAGGAGGCAAGCATCAAGGCCGCCATCGATGCCAGCCGCATCCAT
CATCAAATGCTGCCCAATGTTCTGCTCTACGAGTATGGACTACGGCAGAG
CTATGTGGATAGCTTGGCGGAGAGGGGACATCGATGCGAGCGTTATGAGA
ACCGCGGTTCCGTCATCTGTGGAATCGCTCAAGCTAACGACACCATCTGG
GTGAACTCGGATTTTCGGAAGCCAGGTGGAGTTAGTGGATTTTAAAAGCT
TTCTAGACCAT
BS11480.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:31:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1492-RB | 1779 | CG1492-PB | 1..1779 | 17..1795 | 8895 | 100 | Plus |
CG1492-RA | 1779 | CG1492-PA | 1..1779 | 17..1795 | 8895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:31:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1492-RB | 2289 | CG1492-RB | 128..1908 | 17..1797 | 8905 | 100 | Plus |
CG1492-RA | 2000 | CG1492-RA | 128..1908 | 17..1797 | 8905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:31:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12010948..12011934 | 1093..107 | 4935 | 100 | Minus |
X | 23542271 | X | 12010092..12010601 | 1797..1288 | 2550 | 100 | Minus |
X | 23542271 | X | 12010673..12010868 | 1287..1092 | 980 | 100 | Minus |
X | 23542271 | X | 12011990..12012084 | 111..17 | 460 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:31:05 has no hits.
BS11480.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:57 Download gff for
BS11480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1492-RA | 126..1902 | 17..1793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:57 Download gff for
BS11480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1492-RA | 128..1904 | 17..1793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:01:39 Download gff for
BS11480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1492-RA | 126..1902 | 17..1793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:05 Download gff for
BS11480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1492-RA | 128..1904 | 17..1793 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:05 Download gff for
BS11480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12010096..12010601 | 1288..1793 | 100 | <- | Minus |
X | 12010673..12010866 | 1094..1287 | 100 | <- | Minus |
X | 12010948..12011933 | 108..1093 | 100 | <- | Minus |
X | 12011994..12012084 | 17..107 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:57 Download gff for
BS11480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11904129..11904634 | 1288..1793 | 100 | <- | Minus |
arm_X | 11904706..11904899 | 1094..1287 | 100 | <- | Minus |
arm_X | 11904981..11905966 | 108..1093 | 100 | <- | Minus |
arm_X | 11906027..11906117 | 17..107 | 100 | | Minus |
BS11480.3prime Sequence
878 bp (797 high quality bases) assembled on 2006-05-08
> BS11480.3prime
ATGGTCTAGAAAGCTTTTAAAATCCACTAACTCCACCTGGCTTCCGAAAA
TCCGAGTTCACCCAGATGGTGTCGTTAGCTTGAGCGATTCCACAGATGAC
GGAACCGCGGTTCTCATAACGCTCGCATCGATGTCCCCTCTCCGCCAAGC
TATCCACATAGCTCTGCCGTAGTCCATACTCGTAGAGCAGAACATTGGGC
AGCATTTGATGATGGATGCGGCTGGCATCGATGGCGGCCTTGATGCTTGC
CTCCTGCCACAGGATGCGCACGAGGAGGGGAGAGAGGGCAGAGATTATTT
TGGTACCGCCAGCGGCACCCACAACCAAGCGAACGTTGCCAGTGGCGCGT
TCCGTGACAATCACTGGACACATGGAGGACATGGGACGGGCGGCAGGAGC
TACACCATTCGTGCCAGGCACGAAGGGCAGATCGAAGTAGTTCTTGAGCT
GTTCGATGGAGAAATCCGACATGGCATTGTTAAAGATGACACCTGTGCGC
CTGCCAGTTCGTCCACTGCCAAAATAGAAATTGATGGAGCTTGTCACTGA
AACTGCATCGTTTCCATGGAGCACTGAAGTGTGCGCTGTGCCGTGCTCAT
CACGTATTTGAATTCCAGGTGAAGCTCCATAGAACTCTGGTCGGTTAAAG
GTGTGTGTGTGGTTAATTTGCCTGGCCACGGATTTTGCCAATTCATGACT
GGTCAAATTCGACAAAAGCTCTTCGCTCGCGGATTCATCCAGTTGCCATC
GCTTGACGAATCCAAACTTCATTGCCTCGACCATCAAATGGATTTGACGT
GGGCTCATAGTTCCGGCTCTTGAGAATTCCGCCCGGAACTCTTTAGTATG
TTCATTATGAAGCCGAGAACGTGACCAC
BS11480.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1492-PA | 1779 | CG1492-RA | 955..1779 | 841..17 | 4125 | 100 | Minus |
CG1492-PA | 1779 | CG1492-RA | 917..954 | 878..841 | 190 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:01:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1492-RB | 2289 | CG1492-RB | 1044..1908 | 878..15 | 4300 | 99.9 | Minus |
CG1492-RA | 2000 | CG1492-RA | 1044..1908 | 878..15 | 4300 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:01:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12010092..12010601 | 15..524 | 2550 | 100 | Plus |
X | 23542271 | X | 12010673..12010868 | 525..720 | 980 | 100 | Plus |
X | 23542271 | X | 12010948..12011108 | 719..878 | 755 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-08 13:01:33 has no hits.
BS11480.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:30 Download gff for
BS11480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1492-PA | 917..1779 | 17..878 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:41:32 Download gff for
BS11480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1492-PA | 917..1779 | 17..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:42:18 Download gff for
BS11480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1492-RA | 1044..1908 | 15..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:25:29 Download gff for
BS11480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1492-RA | 1044..1908 | 15..878 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:25:29 Download gff for
BS11480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12010092..12010601 | 15..524 | 100 | <- | Plus |
X | 12010673..12010866 | 525..718 | 100 | <- | Plus |
X | 12010948..12011108 | 719..878 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:42:18 Download gff for
BS11480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11904125..11904634 | 15..524 | 100 | <- | Plus |
arm_X | 11904706..11904899 | 525..718 | 100 | <- | Plus |
arm_X | 11904981..11905141 | 719..878 | 99 | | Plus |
BS11480.5prime Sequence
871 bp (813 high quality bases) assembled on 2006-05-08
> BS11480.5prime
GAAGTTATCAGTCGACATGTACATTAGGATAGGATTGAATAGTTTGATAT
CCGTGGTGATTGTCATCCTGGTGGCAGTCTATATCTACCGGTATCCGGAC
GGAAATGCTGGCAAAAAGAAGGCGTCCAGGAGACCGCCAAATCCGGAGGA
TCCACTGCCGCCCTCCAATTCGCCGCTCCATCGATTCTCCCGGGCGGCCA
TTTGCTCCGACAGCGATGTGTGCAGCCAATTGGCCAAAAAAGTCCTGGAG
AATGGAGGAAGTGCTGTGGATGGCGCCTTGGCTGCTCTCATTTGCAACGG
ACTCATCGGGATGCAGAGCATGGGCATCGGTGGCGGCATGGTGATGAATG
TTTATGTGGCCAAGGAGAACAAATCCTACAGCATTCTGGCCAGGGAAATG
GCGCCGCTGGCATTGCGTGCGGATAACTTCTCGTCATTTCGCGATGAGCA
GGATTTCAAGAGATCCGGATGGTCCATTGCCGTGCCAGCTGAATTGGCCG
GTTATGCGGTGGCCCACCAGAGATTCGGGCGGCTAAAGTGGAAGGATTTG
GTGCTGCCAACTTTGGAATTGTGTCGTCGTGGCTATCGATTGTATAAGCA
CCAGTATGATGCGCTCATACTCAATCAGGACATGATCAGGGCCGATTCCG
GCCTACGCCGGATGTTCATCGATCCCGACACCGGGCGCTTCTGGCCATTG
GGTCATCTCATTCGCCCTGCGGCTCAATTGTGCAACACCTACGATCGGTT
GGCCAACGAGGGACCACTCAGTTTCTACCGCGGATCTATCGCCGATGATC
TGCTGGCCGACTTGAAGGACGCGGGCAGTGCAATAACTAAGGAAGACCTC
AACCAAGCGCACGCCCAATTG
BS11480.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1492-PA | 1779 | CG1492-RA | 1..855 | 17..871 | 4250 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:45:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1492-RB | 2289 | CG1492-RB | 128..982 | 17..871 | 4260 | 99.9 | Plus |
CG1492-RA | 2000 | CG1492-RA | 128..982 | 17..871 | 4260 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:44:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12011170..12011934 | 871..107 | 3810 | 99.9 | Minus |
X | 23542271 | X | 12011990..12012084 | 111..17 | 460 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:44:57 has no hits.
BS11480.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:31 Download gff for
BS11480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1492-PA | 1..855 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:41:33 Download gff for
BS11480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1492-PA | 1..855 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:01:29 Download gff for
BS11480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1492-RA | 124..982 | 10..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:09:31 Download gff for
BS11480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1492-RA | 124..982 | 10..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:31 Download gff for
BS11480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12011170..12011933 | 108..871 | 99 | <- | Minus |
X | 12011994..12012088 | 10..107 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:01:29 Download gff for
BS11480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11905203..11905966 | 108..871 | 99 | <- | Minus |
arm_X | 11906027..11906121 | 10..107 | 96 | | Minus |
BS11480.pep Sequence
Translation from 16 to 1794
> BS11480.pep
MYIRIGLNSLISVVIVILVAVYIYRYPDGNAGKKKASRRPPNPEDPLPPS
NSPLHRFSRAAICSDSDVCSQLAKKVLENGGSAVDGALAALICNGLIGMQ
SMGIGGGMVMNVYVAKENKSYSILAREMAPLALRADNFSSFRDEQDFKRS
GWSIAVPAELAGYAVAHQRFGRLKWKDLVLPTLELCRRGYRLYKHQYDAL
ILNQDMIRADSGLRRMFIDPDTGRFWPLGHLIRPAAQLCNTYDRLANEGP
LSFYRGSIADDLLADLKDAGSAITKEDLNQAHAKLSSAIVMPLDEYDLHL
TPPPGSGHVLGFIMNILKEFRAEFSRAGTMSPRQIHLMVEAMKFGFVKRW
QLDESASEELLSNLTSHELAKSVARQINHTHTFNRPEFYGASPGIQIRDE
HGTAHTSVLHGNDAVSVTSSINFYFGSGRTGRRTGVIFNNAMSDFSIEQL
KNYFDLPFVPGTNGVAPAARPMSSMCPVIVTERATGNVRLVVGAAGGTKI
ISALSPLLVRILWQEASIKAAIDASRIHHQMLPNVLLYEYGLRQSYVDSL
AERGHRCERYENRGSVICGIAQANDTIWVNSDFRKPGGVSGF*
BS11480.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:00:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1492-PB | 592 | CG1492-PB | 1..592 | 1..592 | 3072 | 100 | Plus |
CG1492-PA | 592 | CG1492-PA | 1..592 | 1..592 | 3072 | 100 | Plus |
CG4829-PD | 687 | CG4829-PD | 146..687 | 51..592 | 967 | 40.2 | Plus |
CG4829-PE | 732 | CG4829-PE | 191..732 | 51..592 | 967 | 40.2 | Plus |
CG4829-PC | 777 | CG4829-PC | 236..777 | 51..592 | 967 | 40.2 | Plus |