Clone BS11480 Report

Search the DGRC for BS11480

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:114
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG1492-RA
Protein status:BS11480.pep: full length peptide match
Sequenced Size:1811

Clone Sequence Records

BS11480.complete Sequence

1811 bp assembled on 2009-12-07

GenBank Submission: KX803497

> BS11480.complete
GAAGTTATCAGTCGACATGTACATTAGGATAGGATTGAATAGTTTGATAT
CCGTGGTGATTGTCATCCTGGTGGCAGTCTATATCTACCGGTATCCGGAC
GGAAATGCTGGCAAAAAGAAGGCGTCCAGGAGACCGCCAAATCCGGAGGA
TCCACTGCCGCCCTCCAATTCGCCGCTCCATCGATTCTCCCGGGCGGCCA
TTTGCTCCGACAGCGATGTGTGCAGCCAATTGGCCAAAAAAGTCCTGGAG
AATGGAGGAAGTGCTGTGGATGGCGCCTTGGCTGCTCTCATTTGCAACGG
ACTCATCGGGATGCAGAGCATGGGCATCGGTGGCGGCATGGTGATGAATG
TTTATGTGGCCAAGGAGAACAAATCCTACAGCATTCTGGCCAGGGAAATG
GCGCCGCTGGCATTGCGTGCGGATAACTTCTCGTCATTTCGCGATGAGCA
GGATTTCAAGAGATCCGGATGGTCCATTGCCGTGCCAGCTGAATTGGCCG
GTTATGCGGTGGCCCACCAGAGATTCGGGCGGCTAAAGTGGAAGGATTTG
GTGCTGCCAACTTTGGAATTGTGTCGTCGTGGCTATCGATTGTATAAGCA
CCAGTATGATGCGCTCATACTCAATCAGGACATGATCAGGGCCGATTCCG
GCCTACGCCGGATGTTCATCGATCCCGACACCGGGCGCTTCTGGCCATTG
GGTCATCTCATTCGCCCTGCGGCTCAATTGTGCAACACCTACGATCGGTT
GGCCAACGAGGGACCACTCAGTTTCTACCGCGGATCTATCGCCGATGATC
TGCTGGCCGACTTGAAGGACGCGGGCAGTGCAATAACTAAGGAAGACCTC
AACCAAGCGCACGCCAAATTGAGTAGCGCCATTGTGATGCCACTGGATGA
GTATGATCTCCATTTGACTCCTCCACCTGGAAGTGGTCACGTTCTCGGCT
TCATAATGAACATACTAAAGGAGTTCCGGGCGGAATTCTCAAGAGCCGGA
ACTATGAGCCCACGTCAAATCCATTTGATGGTCGAGGCAATGAAGTTTGG
ATTCGTCAAGCGATGGCAACTGGATGAATCCGCGAGCGAAGAGCTTTTGT
CGAATTTGACCAGTCATGAATTGGCAAAATCCGTGGCCAGGCAAATTAAC
CACACACACACCTTTAACCGACCAGAGTTCTATGGAGCTTCACCTGGAAT
TCAAATACGTGATGAGCACGGCACAGCGCACACTTCAGTGCTCCATGGAA
ACGATGCAGTTTCAGTGACAAGCTCCATCAATTTCTATTTTGGCAGTGGA
CGAACTGGCAGGCGCACAGGTGTCATCTTTAACAATGCCATGTCGGATTT
CTCCATCGAACAGCTCAAGAACTACTTCGATCTGCCCTTCGTGCCTGGCA
CGAATGGTGTAGCTCCTGCCGCCCGTCCCATGTCCTCCATGTGTCCAGTG
ATTGTCACGGAACGCGCCACTGGCAACGTTCGCTTGGTTGTGGGTGCCGC
TGGCGGTACCAAAATAATCTCTGCCCTCTCTCCCCTCCTCGTGCGCATCC
TGTGGCAGGAGGCAAGCATCAAGGCCGCCATCGATGCCAGCCGCATCCAT
CATCAAATGCTGCCCAATGTTCTGCTCTACGAGTATGGACTACGGCAGAG
CTATGTGGATAGCTTGGCGGAGAGGGGACATCGATGCGAGCGTTATGAGA
ACCGCGGTTCCGTCATCTGTGGAATCGCTCAAGCTAACGACACCATCTGG
GTGAACTCGGATTTTCGGAAGCCAGGTGGAGTTAGTGGATTTTAAAAGCT
TTCTAGACCAT

BS11480.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:31:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG1492-RB 1779 CG1492-PB 1..1779 17..1795 8895 100 Plus
CG1492-RA 1779 CG1492-PA 1..1779 17..1795 8895 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG1492-RB 2289 CG1492-RB 128..1908 17..1797 8905 100 Plus
CG1492-RA 2000 CG1492-RA 128..1908 17..1797 8905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:31:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12010948..12011934 1093..107 4935 100 Minus
X 23542271 X 12010092..12010601 1797..1288 2550 100 Minus
X 23542271 X 12010673..12010868 1287..1092 980 100 Minus
X 23542271 X 12011990..12012084 111..17 460 98.9 Minus
Blast to na_te.dros performed on 2014-11-28 02:31:05 has no hits.

BS11480.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:57 Download gff for BS11480.complete
Subject Subject Range Query Range Percent Splice Strand
CG1492-RA 126..1902 17..1793 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:57 Download gff for BS11480.complete
Subject Subject Range Query Range Percent Splice Strand
CG1492-RA 128..1904 17..1793 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:01:39 Download gff for BS11480.complete
Subject Subject Range Query Range Percent Splice Strand
CG1492-RA 126..1902 17..1793 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:05 Download gff for BS11480.complete
Subject Subject Range Query Range Percent Splice Strand
CG1492-RA 128..1904 17..1793 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:05 Download gff for BS11480.complete
Subject Subject Range Query Range Percent Splice Strand
X 12010096..12010601 1288..1793 100 <- Minus
X 12010673..12010866 1094..1287 100 <- Minus
X 12010948..12011933 108..1093 100 <- Minus
X 12011994..12012084 17..107 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:57 Download gff for BS11480.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11904129..11904634 1288..1793 100 <- Minus
arm_X 11904706..11904899 1094..1287 100 <- Minus
arm_X 11904981..11905966 108..1093 100 <- Minus
arm_X 11906027..11906117 17..107 100   Minus

BS11480.3prime Sequence

878 bp (797 high quality bases) assembled on 2006-05-08

> BS11480.3prime
ATGGTCTAGAAAGCTTTTAAAATCCACTAACTCCACCTGGCTTCCGAAAA
TCCGAGTTCACCCAGATGGTGTCGTTAGCTTGAGCGATTCCACAGATGAC
GGAACCGCGGTTCTCATAACGCTCGCATCGATGTCCCCTCTCCGCCAAGC
TATCCACATAGCTCTGCCGTAGTCCATACTCGTAGAGCAGAACATTGGGC
AGCATTTGATGATGGATGCGGCTGGCATCGATGGCGGCCTTGATGCTTGC
CTCCTGCCACAGGATGCGCACGAGGAGGGGAGAGAGGGCAGAGATTATTT
TGGTACCGCCAGCGGCACCCACAACCAAGCGAACGTTGCCAGTGGCGCGT
TCCGTGACAATCACTGGACACATGGAGGACATGGGACGGGCGGCAGGAGC
TACACCATTCGTGCCAGGCACGAAGGGCAGATCGAAGTAGTTCTTGAGCT
GTTCGATGGAGAAATCCGACATGGCATTGTTAAAGATGACACCTGTGCGC
CTGCCAGTTCGTCCACTGCCAAAATAGAAATTGATGGAGCTTGTCACTGA
AACTGCATCGTTTCCATGGAGCACTGAAGTGTGCGCTGTGCCGTGCTCAT
CACGTATTTGAATTCCAGGTGAAGCTCCATAGAACTCTGGTCGGTTAAAG
GTGTGTGTGTGGTTAATTTGCCTGGCCACGGATTTTGCCAATTCATGACT
GGTCAAATTCGACAAAAGCTCTTCGCTCGCGGATTCATCCAGTTGCCATC
GCTTGACGAATCCAAACTTCATTGCCTCGACCATCAAATGGATTTGACGT
GGGCTCATAGTTCCGGCTCTTGAGAATTCCGCCCGGAACTCTTTAGTATG
TTCATTATGAAGCCGAGAACGTGACCAC

BS11480.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG1492-PA 1779 CG1492-RA 955..1779 841..17 4125 100 Minus
CG1492-PA 1779 CG1492-RA 917..954 878..841 190 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:01:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG1492-RB 2289 CG1492-RB 1044..1908 878..15 4300 99.9 Minus
CG1492-RA 2000 CG1492-RA 1044..1908 878..15 4300 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:01:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12010092..12010601 15..524 2550 100 Plus
X 23542271 X 12010673..12010868 525..720 980 100 Plus
X 23542271 X 12010948..12011108 719..878 755 99.4 Plus
Blast to na_te.dros performed on 2015-02-08 13:01:33 has no hits.

BS11480.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:30 Download gff for BS11480.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1492-PA 917..1779 17..878 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:41:32 Download gff for BS11480.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1492-PA 917..1779 17..878 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:42:18 Download gff for BS11480.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1492-RA 1044..1908 15..878 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:25:29 Download gff for BS11480.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1492-RA 1044..1908 15..878 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:25:29 Download gff for BS11480.3prime
Subject Subject Range Query Range Percent Splice Strand
X 12010092..12010601 15..524 100 <- Plus
X 12010673..12010866 525..718 100 <- Plus
X 12010948..12011108 719..878 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:42:18 Download gff for BS11480.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11904125..11904634 15..524 100 <- Plus
arm_X 11904706..11904899 525..718 100 <- Plus
arm_X 11904981..11905141 719..878 99   Plus

BS11480.5prime Sequence

871 bp (813 high quality bases) assembled on 2006-05-08

> BS11480.5prime
GAAGTTATCAGTCGACATGTACATTAGGATAGGATTGAATAGTTTGATAT
CCGTGGTGATTGTCATCCTGGTGGCAGTCTATATCTACCGGTATCCGGAC
GGAAATGCTGGCAAAAAGAAGGCGTCCAGGAGACCGCCAAATCCGGAGGA
TCCACTGCCGCCCTCCAATTCGCCGCTCCATCGATTCTCCCGGGCGGCCA
TTTGCTCCGACAGCGATGTGTGCAGCCAATTGGCCAAAAAAGTCCTGGAG
AATGGAGGAAGTGCTGTGGATGGCGCCTTGGCTGCTCTCATTTGCAACGG
ACTCATCGGGATGCAGAGCATGGGCATCGGTGGCGGCATGGTGATGAATG
TTTATGTGGCCAAGGAGAACAAATCCTACAGCATTCTGGCCAGGGAAATG
GCGCCGCTGGCATTGCGTGCGGATAACTTCTCGTCATTTCGCGATGAGCA
GGATTTCAAGAGATCCGGATGGTCCATTGCCGTGCCAGCTGAATTGGCCG
GTTATGCGGTGGCCCACCAGAGATTCGGGCGGCTAAAGTGGAAGGATTTG
GTGCTGCCAACTTTGGAATTGTGTCGTCGTGGCTATCGATTGTATAAGCA
CCAGTATGATGCGCTCATACTCAATCAGGACATGATCAGGGCCGATTCCG
GCCTACGCCGGATGTTCATCGATCCCGACACCGGGCGCTTCTGGCCATTG
GGTCATCTCATTCGCCCTGCGGCTCAATTGTGCAACACCTACGATCGGTT
GGCCAACGAGGGACCACTCAGTTTCTACCGCGGATCTATCGCCGATGATC
TGCTGGCCGACTTGAAGGACGCGGGCAGTGCAATAACTAAGGAAGACCTC
AACCAAGCGCACGCCCAATTG

BS11480.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG1492-PA 1779 CG1492-RA 1..855 17..871 4250 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:45:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG1492-RB 2289 CG1492-RB 128..982 17..871 4260 99.9 Plus
CG1492-RA 2000 CG1492-RA 128..982 17..871 4260 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:44:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12011170..12011934 871..107 3810 99.9 Minus
X 23542271 X 12011990..12012084 111..17 460 98.9 Minus
Blast to na_te.dros performed on 2015-02-10 22:44:57 has no hits.

BS11480.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:31 Download gff for BS11480.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1492-PA 1..855 17..871 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:41:33 Download gff for BS11480.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1492-PA 1..855 17..871 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:01:29 Download gff for BS11480.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1492-RA 124..982 10..871 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:09:31 Download gff for BS11480.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1492-RA 124..982 10..871 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:31 Download gff for BS11480.5prime
Subject Subject Range Query Range Percent Splice Strand
X 12011170..12011933 108..871 99 <- Minus
X 12011994..12012088 10..107 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:01:29 Download gff for BS11480.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11905203..11905966 108..871 99 <- Minus
arm_X 11906027..11906121 10..107 96   Minus

BS11480.pep Sequence

Translation from 16 to 1794

> BS11480.pep
MYIRIGLNSLISVVIVILVAVYIYRYPDGNAGKKKASRRPPNPEDPLPPS
NSPLHRFSRAAICSDSDVCSQLAKKVLENGGSAVDGALAALICNGLIGMQ
SMGIGGGMVMNVYVAKENKSYSILAREMAPLALRADNFSSFRDEQDFKRS
GWSIAVPAELAGYAVAHQRFGRLKWKDLVLPTLELCRRGYRLYKHQYDAL
ILNQDMIRADSGLRRMFIDPDTGRFWPLGHLIRPAAQLCNTYDRLANEGP
LSFYRGSIADDLLADLKDAGSAITKEDLNQAHAKLSSAIVMPLDEYDLHL
TPPPGSGHVLGFIMNILKEFRAEFSRAGTMSPRQIHLMVEAMKFGFVKRW
QLDESASEELLSNLTSHELAKSVARQINHTHTFNRPEFYGASPGIQIRDE
HGTAHTSVLHGNDAVSVTSSINFYFGSGRTGRRTGVIFNNAMSDFSIEQL
KNYFDLPFVPGTNGVAPAARPMSSMCPVIVTERATGNVRLVVGAAGGTKI
ISALSPLLVRILWQEASIKAAIDASRIHHQMLPNVLLYEYGLRQSYVDSL
AERGHRCERYENRGSVICGIAQANDTIWVNSDFRKPGGVSGF*

BS11480.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:00:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG1492-PB 592 CG1492-PB 1..592 1..592 3072 100 Plus
CG1492-PA 592 CG1492-PA 1..592 1..592 3072 100 Plus
CG4829-PD 687 CG4829-PD 146..687 51..592 967 40.2 Plus
CG4829-PE 732 CG4829-PE 191..732 51..592 967 40.2 Plus
CG4829-PC 777 CG4829-PC 236..777 51..592 967 40.2 Plus