Clone BS11482 Report

Search the DGRC for BS11482

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:114
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptTaz-RA
Protein status:BS11482.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11482.3prime Sequence

773 bp (757 high quality bases) assembled on 2006-05-08

> BS11482.3prime
ATGGTCTAGAAAGCTTCTAGTTGCGCTCTCTGTGCAATTTCTCTGTCTCC
GCCCGCAAGTCCCGAAAGGCTTCCTGGATTTTGTCTGTAATGAGCTTCCG
CGCCGTTGGCTCCGGTACTTGTCGTTTTTTTAGGTCCAGAATAAAGTCGT
TGAGGTCCAATGGCTGGCCAACATTCAGCGTCACCTGCTTACCACGCTGT
ATCACATAGGGCTCCACATTGGGCAACAGATCGTCCATGCCCTCGTGCCA
CATGGGCAGAATTATGGGGATCTTTGGCGACTCGTAGATGATCCTGCCCA
CGCCCCACTTGAGACGCAGCTCCTCCTTATCCATGTTCACCTTACCTTCG
GGAAACACATGGATCCAATGGCCCAGTGCGGCCTTCTCGATGCACAGGTT
GATGGCATCCTGGTAGACACCGATGCCACGCACAACAGGTATGCACTTGC
CAAACATGAAGAAGAGCGAGTGCAGCTTGTTAGTGAAGCAAATGTCGTGA
GCGGCCATTGACCAACGAATTTTATAGGTATTGCAGACAATTCCCAGGGG
AAGGCAGCCCCACAGCCCAGGATCGTCGAAGCAGGAGTAGTGGTTGGACA
CGGTGACCAGGGGAATGCCCTTGGGTCGCTTCGTTATCAGCTGGATCAGT
CGCTCCCTGTTATAGACGCGGGGTTTATTCAAAAACATCAGCACAACCTT
GCTGAAGATTCCAACGGCGGAGACGACGAACTGGCTGACCACGTACCAGA
ACTTCGAGGGGTTTCTCAGCCTA

BS11482.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG8766-PA 1137 tafazzin-RA 381..1137 773..17 3785 100 Minus
CG8766-PB 837 tafazzin-RB 81..837 773..17 3785 100 Minus
CG8766-PC 1017 tafazzin-RC 261..1017 773..17 3785 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
Taz-RD 1323 CG8766-RD 360..1118 773..15 3795 100 Minus
Taz-RC 1174 CG8766-RC 328..1086 773..15 3795 100 Minus
Taz-RB 1625 CG8766-RB 586..1344 773..15 3795 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:48:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12753427..12753817 61..451 1955 100 Plus
2R 25286936 2R 12753890..12754127 450..687 1190 100 Plus
2R 25286936 2R 12754408..12754493 688..773 430 100 Plus
2R 25286936 2R 12753307..12753354 15..62 240 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:49:01 has no hits.

BS11482.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:35 Download gff for BS11482.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8766-PC 262..1017 17..772 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:41:37 Download gff for BS11482.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8766-PC 262..1017 17..772 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:43:31 Download gff for BS11482.3prime
Subject Subject Range Query Range Percent Splice Strand
Taz-RB 587..1344 15..772 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:51:48 Download gff for BS11482.3prime
Subject Subject Range Query Range Percent Splice Strand
Taz-RB 587..1344 15..772 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:51:48 Download gff for BS11482.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12753307..12753353 15..61 100 <- Plus
2R 12753428..12753816 62..450 100 <- Plus
2R 12753891..12754127 451..687 100 <- Plus
2R 12754408..12754492 688..772 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:43:31 Download gff for BS11482.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8640812..8640858 15..61 100 <- Plus
arm_2R 8640933..8641321 62..450 100 <- Plus
arm_2R 8641396..8641632 451..687 100 <- Plus
arm_2R 8641913..8641997 688..772 100   Plus

BS11482.5prime Sequence

817 bp (796 high quality bases) assembled on 2006-05-08

> BS11482.5prime
GAAGTTATCAGTCGACATGTTTATGGTCGTGTGTTCCAATTTAAGGCGTC
CCGGGCACGTGGGCGCCGCATCTGCAGCGCGAAATATAAACTGGCTGATC
AGCGAGGGATATACACCGCCGATCCGGGCAATGGCGCGGCCATACGTCCA
AGCTCCGGAGGCGCGGCCAGTGCCCGATGAGCGCTATCCGGGCAGCCAGC
AGGATAGGAAGGATATCGCCACCCAGACTGTGCGGAGCAGCAAGCCCAAA
GACCTGCGACCGCCTTCGCCGCCGACGCCGTCCCAGACCCTAAACTCCTC
TTCCCTTCCGCCCCCAATGTCCGACCAGGATGCTGATCCCTCCCTGGATG
TGCCCACCGGCGTGGCGATGCCCTACAACATCGACTGGATATTCCCTAGG
CTGAGAAACCCCTCGAAGTTCTGGTACGTGGTCAGCCAGTTCGTCGTCTC
CGCCGTTGGAATCTTCAGCAAGGTTGTGCTGATGTTTTTGAATAAACCCC
GCGTCTATAACAGGGAGCGACTGATCCAGCTGATAACGAAGCGACCCAAG
GGCATTCCCCTGGTCACCGTGTCCAACCACTACTCCTGCTTCGACGATCC
TGGGCTGTGGGGCTGCCTTCCCCTGGGAATTGTCTGCAATACCTATAAAA
TTCGTTGGTCAATGGCCGCTCACGACATTTGCTTCACTAACAAGCTGCAC
TCGCTCTTCTTCATGTTTGGCAAGTGCATACCTGTTGTGCGTGGCATCGG
TGTCTACCAGGATGCCATCAACCTGTGCATCGAGAAGGCCGCACTGGGGC
ATTGGATCCATGTGTTT

BS11482.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG8766-PA 1137 tafazzin-RA 1..801 17..817 3980 99.8 Plus
CG8766-PC 1017 tafazzin-RC 3..681 139..817 3370 99.8 Plus
CG8766-PB 837 tafazzin-RB 1..501 317..817 2480 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:31:43
Subject Length Description Subject Range Query Range Score Percent Strand
Taz-RA 1776 CG8766-RA 357..1157 17..817 3990 99.9 Plus
Taz-RC 1174 CG8766-RC 70..748 139..817 3380 99.9 Plus
Taz-RD 1323 CG8766-RD 103..780 140..817 3375 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:31:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12754408..12754751 482..139 1720 100 Minus
2R 25286936 2R 12753890..12754127 720..483 1190 100 Minus
2R 25286936 2R 12755936..12756058 139..17 615 100 Minus
2R 25286936 2R 12753719..12753817 817..719 480 99 Minus
Blast to na_te.dros performed on 2015-02-12 19:31:41 has no hits.

BS11482.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:36 Download gff for BS11482.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8766-PA 1..801 17..817 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:41:39 Download gff for BS11482.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8766-PA 1..801 17..817 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:18:29 Download gff for BS11482.5prime
Subject Subject Range Query Range Percent Splice Strand
Taz-RA 351..1157 11..817 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:46:24 Download gff for BS11482.5prime
Subject Subject Range Query Range Percent Splice Strand
Taz-RA 351..1157 11..817 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:46:24 Download gff for BS11482.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12753719..12753816 720..817 98 <- Minus
2R 12753891..12754127 483..719 100 <- Minus
2R 12754408..12754750 140..482 100 <- Minus
2R 12755936..12756064 11..139 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:18:29 Download gff for BS11482.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8643441..8643569 11..139 98   Minus
arm_2R 8641224..8641321 720..817 98 <- Minus
arm_2R 8641396..8641632 483..719 100 <- Minus
arm_2R 8641913..8642255 140..482 100 <- Minus

BS11482.complete Sequence

1169 bp assembled on 2006-11-01

GenBank Submission: FJ636886

> BS11482.complete
GAAGTTATCAGTCGACATGTTTATGGTCGTGTGTTCCAATTTAAGGCGTC
CCGGGCACGTGGGCGCCGCATCTGCAGCGCGAAATATAAACTGGCTGATC
AGCGAGGGATATACACCGCCGATCCGGGCAATGGCGCGGCCATACGTCCA
AGCTCCGGAGGCGCGGCCAGTGCCCGATGAGCGCTATCCGGGCAGCCAGC
AGGATAGGAAGGATATCGCCACCCAGACTGTGCGGAGCAGCAAGCCCAAA
GACCTGCGACCGCCTTCGCCGCCGACGCCGTCCCAGACCCTAAACTCCTC
TTCCCTTCCGCCCCCAATGTCCGACCAGGATGCTGATCCCTCCCTGGATG
TGCCCACCGGCGTGGCGATGCCCTACAACATCGACTGGATATTCCCTAGG
CTGAGAAACCCCTCGAAGTTCTGGTACGTGGTCAGCCAGTTCGTCGTCTC
CGCCGTTGGAATCTTCAGCAAGGTTGTGCTGATGTTTTTGAATAAACCCC
GCGTCTATAACAGGGAGCGACTGATCCAGCTGATAACGAAGCGACCCAAG
GGCATTCCCCTGGTCACCGTGTCCAACCACTACTCCTGCTTCGACGATCC
TGGGCTGTGGGGCTGCCTTCCCCTGGGAATTGTCTGCAATACCTATAAAA
TTCGTTGGTCAATGGCCGCTCACGACATTTGCTTCACTAACAAGCTGCAC
TCGCTCTTCTTCATGTTTGGCAAGTGCATACCTGTTGTGCGTGGCATCGG
TGTCTACCAGGATGCCATCAACCTGTGCATCGAGAAGGCCGCACTGGGCC
ATTGGATCCATGTGTTTCCCGAAGGTAAGGTGAACATGGATAAGGAGGAG
CTGCGTCTCAAGTGGGGCGTGGGCAGGATCATCTACGAGTCGCCAAAGAT
CCCCATAATTCTGCCCATGTGGCACGAGGGCATGGACGATCTGTTGCCCA
ATGTGGAGCCCTATGTGATACAGCGTGGTAAGCAGGTGACGCTGAATGTT
GGCCAGCCATTGGACCTCAACGACTTTATTCTGGACCTAAAAAAACGACA
AGTACCGGAGCCAACGGCGCGGAAGCTCATTACAGACAAAATCCAGGAAG
CCTTTCGGGACTTGCGGGCGGAGACAGAGAAATTGCACAGAGAGCGCAAC
TAGAAGCTTTCTAGACCAT

BS11482.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:36:07
Subject Length Description Subject Range Query Range Score Percent Strand
Taz-RA 1137 CG8766-PA 1..1137 17..1153 5685 100 Plus
Taz-RC 1017 CG8766-PC 3..1017 139..1153 5075 100 Plus
Taz-RD 837 CG8766-PD 1..837 317..1153 4185 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:36:08
Subject Length Description Subject Range Query Range Score Percent Strand
Taz-RA 1776 CG8766-RA 357..1495 17..1155 5695 100 Plus
Taz-RC 1174 CG8766-RC 70..1086 139..1155 5085 100 Plus
Taz-RD 1323 CG8766-RD 103..1118 140..1155 5080 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:36:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12753427..12753817 1109..719 1955 100 Minus
2R 25286936 2R 12754408..12754751 482..139 1720 100 Minus
2R 25286936 2R 12753890..12754127 720..483 1190 100 Minus
2R 25286936 2R 12755936..12756058 139..17 615 100 Minus
2R 25286936 2R 12753307..12753354 1155..1108 240 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:36:06 has no hits.

BS11482.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:08 Download gff for BS11482.complete
Subject Subject Range Query Range Percent Splice Strand
tafazzin-RA 1..1137 17..1153 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:10 Download gff for BS11482.complete
Subject Subject Range Query Range Percent Splice Strand
tafazzin-RA 347..1491 11..1155 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:00:33 Download gff for BS11482.complete
Subject Subject Range Query Range Percent Splice Strand
Taz-RA 363..1493 23..1153 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:08 Download gff for BS11482.complete
Subject Subject Range Query Range Percent Splice Strand
tafazzin-RA 347..1491 11..1155 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:23:00 Download gff for BS11482.complete
Subject Subject Range Query Range Percent Splice Strand
Taz-RA 363..1493 23..1153 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:23:00 Download gff for BS11482.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12753309..12753353 1109..1153 100 <- Minus
2R 12753428..12753816 720..1108 100 <- Minus
2R 12753891..12754127 483..719 100 <- Minus
2R 12754408..12754750 140..482 100 <- Minus
2R 12755936..12756052 23..139 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:00:33 Download gff for BS11482.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8640814..8640858 1109..1153 100 <- Minus
arm_2R 8640933..8641321 720..1108 100 <- Minus
arm_2R 8641396..8641632 483..719 100 <- Minus
arm_2R 8641913..8642255 140..482 100 <- Minus
arm_2R 8643441..8643557 23..139 100   Minus

BS11482.pep Sequence

Translation from 16 to 1152

> BS11482.pep
MFMVVCSNLRRPGHVGAASAARNINWLISEGYTPPIRAMARPYVQAPEAR
PVPDERYPGSQQDRKDIATQTVRSSKPKDLRPPSPPTPSQTLNSSSLPPP
MSDQDADPSLDVPTGVAMPYNIDWIFPRLRNPSKFWYVVSQFVVSAVGIF
SKVVLMFLNKPRVYNRERLIQLITKRPKGIPLVTVSNHYSCFDDPGLWGC
LPLGIVCNTYKIRWSMAAHDICFTNKLHSLFFMFGKCIPVVRGIGVYQDA
INLCIEKAALGHWIHVFPEGKVNMDKEELRLKWGVGRIIYESPKIPIILP
MWHEGMDDLLPNVEPYVIQRGKQVTLNVGQPLDLNDFILDLKKRQVPEPT
ARKLITDKIQEAFRDLRAETEKLHRERN*

BS11482.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:34
Subject Length Description Subject Range Query Range Score Percent Strand
Taz-PA 378 CG8766-PA 1..378 1..378 2027 100 Plus
Taz-PC 338 CG8766-PC 2..338 42..378 1811 100 Plus
Taz-PD 278 CG8766-PD 1..278 101..378 1496 100 Plus
Taz-PB 278 CG8766-PB 1..278 101..378 1496 100 Plus