Clone Sequence Records
BS11483.3prime Sequence
474 bp (473 high quality bases) assembled on 2006-05-08
> BS11483.3prime
ATGGTCTAGAAAGCTTTTATATGGGCTTGATCTTGAAATGCAGGCCGATG
AGTGAGAAGACCAGGCACTTGAGATCCTGCACCAGGTAGTAAAAGCATCG
CAGGCCCTCGGGATCTTTTGACCGGTTCACGTCCACCAATGATCCCGTTT
TCGAGGTGGTGAACGAGATGTGCTCGTCTCCGATGACGATCTCCAGTTCC
TGTCGACCCACGCGATCTGGTGGCGGCCAGGGCAGATCGTCCTCCTGCAT
GATCTCCGAGTCGATGATGATTCGCTTCAGTTCTTCCATCACGGACTGGT
GGACGAAGGCCTCCTTGCGGATCATGGTGTCGTTCTTGTAGTTGGAGTTG
TTGGCGTACCGCAGCTTGCCATCCGGCCGGAACTCGAACTCCAAGAATTC
GTGCCCGAACTTGCCCTTGTGTCCGACGTAGTAGCGTAGGTAAAAGTCCT
CCGTGGACATGTCGACTGATAACT
BS11483.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9401-PA | 444 | mago-RA | 1..444 | 460..17 | 2220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:47:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mago-RA | 1103 | CG9401-RA | 117..561 | 461..17 | 2225 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:47:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21128693..21128955 | 461..199 | 1315 | 100 | Minus |
2R | 25286936 | 2R | 21129010..21129195 | 202..17 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 04:47:07 has no hits.
BS11483.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:37 Download gff for
BS11483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mago-PA | 1..444 | 17..460 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:41:40 Download gff for
BS11483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9401-PA | 1..444 | 17..460 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:08:26 Download gff for
BS11483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mago-RA | 111..563 | 13..467 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:49:30 Download gff for
BS11483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mago-RA | 111..563 | 13..467 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:49:30 Download gff for
BS11483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21128687..21128954 | 200..467 | 98 | -> | Minus |
2R | 21129013..21129197 | 13..199 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:08:26 Download gff for
BS11483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17016192..17016459 | 200..467 | 98 | -> | Minus |
arm_2R | 17016518..17016702 | 13..199 | 98 | | Minus |
BS11483.5prime Sequence
474 bp (473 high quality bases) assembled on 2006-05-08
> BS11483.5prime
GAAGTTATCAGTCGACATGTCCACGGAGGACTTTTACCTACGCTACTACG
TCGGACACAAGGGCAAGTTCGGGCACGAATTCTTGGAGTTCGAGTTCCGG
CCGGATGGCAAGCTGCGGTACGCCAACAACTCCAACTACAAGAACGACAC
CATGATCCGCAAGGAGGCCTTCGTCCACCAGTCCGTGATGGAAGAACTGA
AGCGAATCATCATCGACTCGGAGATCATGCAGGAGGACGATCTGCCCTGG
CCGCCACCAGATCGCGTGGGTCGACAGGAACTGGAGATCGTCATCGGAGA
CGAGCACATCTCGTTCACCACCTCGAAAACGGGATCATTGGTGGACGTGA
ACCGGTCAAAAGATCCCGAGGGCCTGCGATGCTTTTACTACCTGGTGCAG
GATCTCAAGTGCCTGGTCTTCTCACTCATCGGCCTGCATTTCAAGATCAA
GCCCATATAAAAGCTTTCTAGACC
BS11483.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9401-PA | 444 | mago-RA | 1..444 | 17..460 | 2220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:56:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mago-RA | 1103 | CG9401-RA | 117..561 | 16..460 | 2225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:56:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21128693..21128955 | 16..278 | 1315 | 100 | Plus |
2R | 25286936 | 2R | 21129010..21129195 | 275..460 | 930 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:56:30 has no hits.
BS11483.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:38 Download gff for
BS11483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mago-PA | 1..444 | 17..460 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:41:41 Download gff for
BS11483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9401-PA | 1..444 | 17..460 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:08:09 Download gff for
BS11483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mago-RA | 111..563 | 10..464 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:09 Download gff for
BS11483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mago-RA | 111..563 | 10..464 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:09 Download gff for
BS11483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21128687..21128954 | 10..277 | 98 | -> | Plus |
2R | 21129013..21129197 | 278..464 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:08:09 Download gff for
BS11483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17016192..17016459 | 10..277 | 98 | -> | Plus |
arm_2R | 17016518..17016702 | 278..464 | 98 | | Plus |
BS11483.complete Sequence
476 bp assembled on 2007-10-17
GenBank Submission: FJ636887
> BS11483.complete
GAAGTTATCAGTCGACATGTCCACGGAGGACTTTTACCTACGCTACTACG
TCGGACACAAGGGCAAGTTCGGGCACGAATTCTTGGAGTTCGAGTTCCGG
CCGGATGGCAAGCTGCGGTACGCCAACAACTCCAACTACAAGAACGACAC
CATGATCCGCAAGGAGGCCTTCGTCCACCAGTCCGTGATGGAAGAACTGA
AGCGAATCATCATCGACTCGGAGATCATGCAGGAGGACGATCTGCCCTGG
CCGCCACCAGATCGCGTGGGTCGACAGGAACTGGAGATCGTCATCGGAGA
CGAGCACATCTCGTTCACCACCTCGAAAACGGGATCATTGGTGGACGTGA
ACCGGTCAAAAGATCCCGAGGGCCTGCGATGCTTTTACTACCTGGTGCAG
GATCTCAAGTGCCTGGTCTTCTCACTCATCGGCCTGCATTTCAAGATCAA
GCCCATATAAAAGCTTTCTAGACCAT
BS11483.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:23:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mago-RA | 444 | CG9401-PA | 1..444 | 17..460 | 2220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mago-RA | 1103 | CG9401-RA | 117..561 | 16..460 | 2225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21128693..21128955 | 16..278 | 1315 | 100 | Plus |
2R | 25286936 | 2R | 21129010..21129195 | 275..460 | 930 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:23:44 has no hits.
BS11483.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:14:07 Download gff for
BS11483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mago-RA | 1..444 | 17..460 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:44:57 Download gff for
BS11483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mago-RA | 109..561 | 10..464 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:50 Download gff for
BS11483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mago-RA | 118..559 | 17..458 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:34:05 Download gff for
BS11483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mago-RA | 116..557 | 17..458 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:30 Download gff for
BS11483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mago-RA | 118..559 | 17..458 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:30 Download gff for
BS11483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21128694..21128954 | 17..277 | 100 | -> | Plus |
2R | 21129013..21129193 | 278..458 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:50 Download gff for
BS11483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17016518..17016698 | 278..458 | 100 | | Plus |
arm_2R | 17016199..17016459 | 17..277 | 100 | -> | Plus |
BS11483.pep Sequence
Translation from 16 to 459
> BS11483.pep
MSTEDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKE
AFVHQSVMEELKRIIIDSEIMQEDDLPWPPPDRVGRQELEIVIGDEHISF
TTSKTGSLVDVNRSKDPEGLRCFYYLVQDLKCLVFSLIGLHFKIKPI*
BS11483.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:38:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mago-PA | 147 | CG9401-PA | 1..147 | 1..147 | 783 | 100 | Plus |