Clone BS11483 Report

Search the DGRC for BS11483

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:114
Well:83
Vector:pDNR-Dual
Associated Gene/Transcriptmago-RA
Protein status:BS11483.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11483.3prime Sequence

474 bp (473 high quality bases) assembled on 2006-05-08

> BS11483.3prime
ATGGTCTAGAAAGCTTTTATATGGGCTTGATCTTGAAATGCAGGCCGATG
AGTGAGAAGACCAGGCACTTGAGATCCTGCACCAGGTAGTAAAAGCATCG
CAGGCCCTCGGGATCTTTTGACCGGTTCACGTCCACCAATGATCCCGTTT
TCGAGGTGGTGAACGAGATGTGCTCGTCTCCGATGACGATCTCCAGTTCC
TGTCGACCCACGCGATCTGGTGGCGGCCAGGGCAGATCGTCCTCCTGCAT
GATCTCCGAGTCGATGATGATTCGCTTCAGTTCTTCCATCACGGACTGGT
GGACGAAGGCCTCCTTGCGGATCATGGTGTCGTTCTTGTAGTTGGAGTTG
TTGGCGTACCGCAGCTTGCCATCCGGCCGGAACTCGAACTCCAAGAATTC
GTGCCCGAACTTGCCCTTGTGTCCGACGTAGTAGCGTAGGTAAAAGTCCT
CCGTGGACATGTCGACTGATAACT

BS11483.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG9401-PA 444 mago-RA 1..444 460..17 2220 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:47:10
Subject Length Description Subject Range Query Range Score Percent Strand
mago-RA 1103 CG9401-RA 117..561 461..17 2225 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21128693..21128955 461..199 1315 100 Minus
2R 25286936 2R 21129010..21129195 202..17 930 100 Minus
Blast to na_te.dros performed on 2015-02-01 04:47:07 has no hits.

BS11483.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:37 Download gff for BS11483.3prime
Subject Subject Range Query Range Percent Splice Strand
mago-PA 1..444 17..460 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:41:40 Download gff for BS11483.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9401-PA 1..444 17..460 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:08:26 Download gff for BS11483.3prime
Subject Subject Range Query Range Percent Splice Strand
mago-RA 111..563 13..467 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:49:30 Download gff for BS11483.3prime
Subject Subject Range Query Range Percent Splice Strand
mago-RA 111..563 13..467 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:49:30 Download gff for BS11483.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21128687..21128954 200..467 98 -> Minus
2R 21129013..21129197 13..199 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:08:26 Download gff for BS11483.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17016192..17016459 200..467 98 -> Minus
arm_2R 17016518..17016702 13..199 98   Minus

BS11483.5prime Sequence

474 bp (473 high quality bases) assembled on 2006-05-08

> BS11483.5prime
GAAGTTATCAGTCGACATGTCCACGGAGGACTTTTACCTACGCTACTACG
TCGGACACAAGGGCAAGTTCGGGCACGAATTCTTGGAGTTCGAGTTCCGG
CCGGATGGCAAGCTGCGGTACGCCAACAACTCCAACTACAAGAACGACAC
CATGATCCGCAAGGAGGCCTTCGTCCACCAGTCCGTGATGGAAGAACTGA
AGCGAATCATCATCGACTCGGAGATCATGCAGGAGGACGATCTGCCCTGG
CCGCCACCAGATCGCGTGGGTCGACAGGAACTGGAGATCGTCATCGGAGA
CGAGCACATCTCGTTCACCACCTCGAAAACGGGATCATTGGTGGACGTGA
ACCGGTCAAAAGATCCCGAGGGCCTGCGATGCTTTTACTACCTGGTGCAG
GATCTCAAGTGCCTGGTCTTCTCACTCATCGGCCTGCATTTCAAGATCAA
GCCCATATAAAAGCTTTCTAGACC

BS11483.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG9401-PA 444 mago-RA 1..444 17..460 2220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:56:33
Subject Length Description Subject Range Query Range Score Percent Strand
mago-RA 1103 CG9401-RA 117..561 16..460 2225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:56:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21128693..21128955 16..278 1315 100 Plus
2R 25286936 2R 21129010..21129195 275..460 930 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:56:30 has no hits.

BS11483.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:38 Download gff for BS11483.5prime
Subject Subject Range Query Range Percent Splice Strand
mago-PA 1..444 17..460 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:41:41 Download gff for BS11483.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9401-PA 1..444 17..460 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:08:09 Download gff for BS11483.5prime
Subject Subject Range Query Range Percent Splice Strand
mago-RA 111..563 10..464 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:09 Download gff for BS11483.5prime
Subject Subject Range Query Range Percent Splice Strand
mago-RA 111..563 10..464 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:09 Download gff for BS11483.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21128687..21128954 10..277 98 -> Plus
2R 21129013..21129197 278..464 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:08:09 Download gff for BS11483.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17016192..17016459 10..277 98 -> Plus
arm_2R 17016518..17016702 278..464 98   Plus

BS11483.complete Sequence

476 bp assembled on 2007-10-17

GenBank Submission: FJ636887

> BS11483.complete
GAAGTTATCAGTCGACATGTCCACGGAGGACTTTTACCTACGCTACTACG
TCGGACACAAGGGCAAGTTCGGGCACGAATTCTTGGAGTTCGAGTTCCGG
CCGGATGGCAAGCTGCGGTACGCCAACAACTCCAACTACAAGAACGACAC
CATGATCCGCAAGGAGGCCTTCGTCCACCAGTCCGTGATGGAAGAACTGA
AGCGAATCATCATCGACTCGGAGATCATGCAGGAGGACGATCTGCCCTGG
CCGCCACCAGATCGCGTGGGTCGACAGGAACTGGAGATCGTCATCGGAGA
CGAGCACATCTCGTTCACCACCTCGAAAACGGGATCATTGGTGGACGTGA
ACCGGTCAAAAGATCCCGAGGGCCTGCGATGCTTTTACTACCTGGTGCAG
GATCTCAAGTGCCTGGTCTTCTCACTCATCGGCCTGCATTTCAAGATCAA
GCCCATATAAAAGCTTTCTAGACCAT

BS11483.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:23:44
Subject Length Description Subject Range Query Range Score Percent Strand
mago-RA 444 CG9401-PA 1..444 17..460 2220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:46
Subject Length Description Subject Range Query Range Score Percent Strand
mago-RA 1103 CG9401-RA 117..561 16..460 2225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21128693..21128955 16..278 1315 100 Plus
2R 25286936 2R 21129010..21129195 275..460 930 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:23:44 has no hits.

BS11483.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:14:07 Download gff for BS11483.complete
Subject Subject Range Query Range Percent Splice Strand
mago-RA 1..444 17..460 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:44:57 Download gff for BS11483.complete
Subject Subject Range Query Range Percent Splice Strand
mago-RA 109..561 10..464 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:50 Download gff for BS11483.complete
Subject Subject Range Query Range Percent Splice Strand
mago-RA 118..559 17..458 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:34:05 Download gff for BS11483.complete
Subject Subject Range Query Range Percent Splice Strand
mago-RA 116..557 17..458 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:30 Download gff for BS11483.complete
Subject Subject Range Query Range Percent Splice Strand
mago-RA 118..559 17..458 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:30 Download gff for BS11483.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21128694..21128954 17..277 100 -> Plus
2R 21129013..21129193 278..458 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:50 Download gff for BS11483.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17016518..17016698 278..458 100   Plus
arm_2R 17016199..17016459 17..277 100 -> Plus

BS11483.pep Sequence

Translation from 16 to 459

> BS11483.pep
MSTEDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKE
AFVHQSVMEELKRIIIDSEIMQEDDLPWPPPDRVGRQELEIVIGDEHISF
TTSKTGSLVDVNRSKDPEGLRCFYYLVQDLKCLVFSLIGLHFKIKPI*

BS11483.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
mago-PA 147 CG9401-PA 1..147 1..147 783 100 Plus