Clone Sequence Records
BS11486.complete Sequence
2147 bp assembled on 2009-12-07
GenBank Submission: KX805246
> BS11486.complete
GAAGTTATCAGTCGACATGACGACAGCCAAATGGATTTGGCGCTTGGCGC
TGAGCATCTTGCTGGTCGTGGGCTTTGTGGCTGCGGAAAAGCCGACTGGC
TATCATCGCGAGATTTGCCAATACCGCAAGGGCAAACATATCCAGCCCAT
GAGTGTTTATCACAATCGCCTGATGGCGATGCGCGAACAAATGCAGATTA
GAGCCACGCTGCAGGGACCGGAGATCTATGGCTACATACTGCCCTCCACG
GATGAGCATCTCAACCAGGAGGTGGCAGCGCGAGATCAGAGATTGCGATA
TCTGTCCGGCTTCTCTGGAGTGCGTGCCTTTGCTGCCGTGACCAGTCACG
GAGCAGCCATTTGGGTGGAGAACAGATATGCCCAGCAGGCCGATGGAGAG
CTGGAGTGCGACTGGGAGATCTATCTGACCAGCGGGAATGTATCAGTGGC
CGACTGGTTGGGGAGCCATGTTCACATCGACAAGCGAGTGGGTGCCGATC
CCCATCTGGTGCCGCACTCCCTTTGGGTTCAGTGGGAGCGAGAGCTGGAG
GACAAGTTCCTTAAGCTGGTCAGGATCAATACCAATCTGGTGGATCACAT
TTGGGGCGATGAGCGACCGGAGATGCCCAAGAACCAGGTGATAAAAGTGC
ACGAGAAGCACTTCGCCGGCGAGAGTTGGCAGGACAAGGTCAAGGAGTTG
AGAAGGCGACTGGCGCATCTGGGCTGCGATGCCATGGTGGTCACTTCGCT
CACCGAGATTGCCTACTTGCTAAACATTCGGGGCACAGACATTCCGTATA
CTCCTGTGATTAAGTCATACGCCGTGATCAGTCGGGATGATATATTCTTC
TATGTGGACCACTCAAAGATTAGTCTGGGCATTGACCTTCATCTCCGCAC
AGACTGCTTCAATGAAGACTGCGTGAAAATCAAAGAGTACAATCAGATCT
GGAGTGACATTCGTACCTATGCTCAGATCTGGAAGCGCGTCCTTGTACCC
GCTCCTTGTGTACAGGATCTTGGAGCGTCGGAGGCGATATACACCTCCAT
GCCAGGCAAAATTGTCGTCTGGGAGATCTCACCCATTATCTTTATGCGGG
CACAGAAAAACTCCGATGAACAGGCCGGTATGAGAAGGGCACACATCCGG
GATGGCGCCGCCATTTGTGAGGCCATGAGCAACATGGAGACTAGGTTCCA
TACCGAGCAGTGGACCGAGGAGAAGATTAAGTACGAGGTAGAGCTCTGGC
GTTTGTCCCAGAAGCACGCCAAGGGCTTGTCCCTGCGAACGGTGGTGGCC
TATGGAGAACACTCCGCCCTGCCCTACTACATCTCCAGCAATGTGACCAA
CATCGAGGTCTCCGACCAGAGTCTGCTGGTCATCGAGTCTGGGGGTCAGT
ATCTGGAGGGCACCACGGACGTGTCGCGCACCTTCATTTTTGGTGAGCCC
ACGCACGAGATGAAAAAGGCCTACACGAATGTTCTGGCTGGAATTCTGCA
TCTGGCACAACTCAAGTTTCCGTCCGATCTGAAGCCCTCCGAGGTGGACG
CCTTGGTGCGCAGCATGGTTTGGAAGGACATGACGGACTTCCCGCAGGCA
ACAGGTCATGGCATTGGATCCTTTGGATCTGTGGAAGAACCTCCTATATC
AGTTTCCTATGGCAAAAATAGCAGTTTTCACTTCAAGCAGGGCTACTTCT
TCTCTAGCGAATCCGGCTACTACAAACGCGATGACTTTGGCGTTCGTCTG
AAGAACGTGCTCGAGGTTGTGGACACTGGCCATACACATCCCAGTGGAGC
ACGCTTCCTTGCATTCCGGGACGTCACCATGGTGCCGTATGAGCCCAAAC
TGATCGACAGTACGCTCCTGAGTGCCGCGGAGAAGCGTCTCCTAAATGAG
TACAATGCCAAGATCCGGAACGATATTGGGGACGAACTGAAGCGACTGGG
CAACATGCGGGCCTTCTACTGGATGATGAACCAAACGCGTCACATTCGGG
AGTATCTGCCTGAGGATGAGTACCGCTCTGCGACCGGAGCAGGAAGCTGT
GGTCACTCCGCCAGTCCCCTGATACTACTGGGACTGGGACTAATGGTTAT
CCTTTCTGCGATTATACCCTCGCGATCCTAAAAGCTTTCTAGACCAT
BS11486.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:22:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6225-RB | 2115 | CG6225-PB | 1..2115 | 17..2131 | 10575 | 100 | Plus |
CG6225-RA | 2115 | CG6225-PA | 1..2115 | 17..2131 | 10575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:22:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6225-RB | 2952 | CG6225-RB | 474..2588 | 17..2131 | 10575 | 100 | Plus |
CG6225-RA | 2726 | CG6225-RA | 248..2362 | 17..2131 | 10575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:22:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12659170..12659882 | 928..1640 | 3565 | 100 | Plus |
3R | 32079331 | 3R | 12658272..12658946 | 140..814 | 3375 | 100 | Plus |
3R | 32079331 | 3R | 12660074..12660496 | 1709..2131 | 2115 | 100 | Plus |
3R | 32079331 | 3R | 12659002..12659116 | 813..927 | 575 | 100 | Plus |
3R | 32079331 | 3R | 12658136..12658210 | 65..139 | 375 | 100 | Plus |
3R | 32079331 | 3R | 12659950..12660018 | 1641..1709 | 345 | 100 | Plus |
3R | 32079331 | 3R | 12656854..12656902 | 17..65 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:22:29 has no hits.
BS11486.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:00 Download gff for
BS11486.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6225-RB | 474..2586 | 17..2129 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:12:42 Download gff for
BS11486.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6225-RA | 248..2360 | 17..2129 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:58:56 Download gff for
BS11486.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6225-RB | 474..2586 | 17..2129 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:07 Download gff for
BS11486.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6225-RA | 248..2360 | 17..2129 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:07 Download gff for
BS11486.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12656854..12656902 | 17..65 | 100 | -> | Plus |
3R | 12658137..12658210 | 66..139 | 100 | -> | Plus |
3R | 12658272..12658946 | 140..814 | 100 | -> | Plus |
3R | 12659004..12659116 | 815..927 | 100 | -> | Plus |
3R | 12659170..12659882 | 928..1640 | 100 | -> | Plus |
3R | 12659950..12660018 | 1641..1709 | 100 | -> | Plus |
3R | 12660075..12660494 | 1710..2129 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:12:42 Download gff for
BS11486.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8482576..8482624 | 17..65 | 100 | -> | Plus |
arm_3R | 8483859..8483932 | 66..139 | 100 | -> | Plus |
arm_3R | 8483994..8484668 | 140..814 | 100 | -> | Plus |
arm_3R | 8484726..8484838 | 815..927 | 100 | -> | Plus |
arm_3R | 8484892..8485604 | 928..1640 | 100 | -> | Plus |
arm_3R | 8485672..8485740 | 1641..1709 | 100 | -> | Plus |
arm_3R | 8485797..8486216 | 1710..2129 | 100 | | Plus |
BS11486.3prime Sequence
820 bp (819 high quality bases) assembled on 2006-05-08
> BS11486.3prime
ATGGTCTAGAAAGCTTTTAGGATCGCGAGGGTATAATCGCAGAAAGGATA
ACCATTAGTCCCAGTCCCAGTAGTATCAGGGGACTGGCGGAGTGACCACA
GCTTCCTGCTCCGGTCGCAGAGCGGTACTCATCCTCAGGCAGATACTCCC
GAATGTGACGCGTTTGGTTCATCATCCAGTAGAAGGCCCGCATGTTGCCC
AGTCGCTTCAGTTCGTCCCCAATATCGTTCCGGATCTTGGCATTGTACTC
ATTTAGGAGACGCTTCTCCGCGGCACTCAGGAGCGTACTGTCGATCAGTT
TGGGCTCATACGGCACCATGGTGACGTCCCGGAATGCAAGGAAGCGTGCT
CCACTGGGATGTGTATGGCCAGTGTCCACAACCTCGAGCACGTTCTTCAG
ACGAACGCCAAAGTCATCGCGTTTGTAGTAGCCGGATTCGCTAGAGAAGA
AGTAGCCCTGCTTGAAGTGAAAACTGCTATTTTTGCCATAGGAAACTGAT
ATAGGAGGTTCTTCCACAGATCCAAAGGATCCAATGCCATGACCTGTTGC
CTGCGGGAAGTCCGTCATGTCCTTCCAAACCATGCTGCGCACCAAGGCGT
CCACCTCGGAGGGCTTCAGATCGGACGGAAACTTGAGTTGTGCCAGATGC
AGAATTCCAGCCAGAACATTCGTGTAGGCCTTTTTCATCTCGTGCGTGGG
CTCACCAAAAATGAAGGTGCGCGACACGTCCGTGGTGCCCTCCAGATACT
GACCCCCAGACTCGATGACCAGCAGACTCTGGTCGGAGACCTCGATGTTG
GTCACATTGCTGGAGATGTA
BS11486.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6225-PA | 2115 | CG6225-RA | 1312..2115 | 820..17 | 4020 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:44:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6225-RB | 2952 | CG6225-RB | 1785..2588 | 820..17 | 4020 | 100 | Minus |
CG6225-RA | 2726 | CG6225-RA | 1559..2362 | 820..17 | 4020 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:44:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12660074..12660496 | 439..17 | 2115 | 100 | Minus |
3R | 32079331 | 3R | 12659570..12659882 | 820..508 | 1565 | 100 | Minus |
3R | 32079331 | 3R | 12659950..12660018 | 507..439 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:44:39 has no hits.
BS11486.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:44 Download gff for
BS11486.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6225-PA | 1313..2115 | 17..819 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:41:50 Download gff for
BS11486.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6225-PA | 1313..2115 | 17..819 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:51:21 Download gff for
BS11486.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6225-RA | 1560..2362 | 17..819 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:32 Download gff for
BS11486.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6225-RA | 1560..2362 | 17..819 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:32 Download gff for
BS11486.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12659571..12659882 | 508..819 | 100 | -> | Minus |
3R | 12659950..12660018 | 439..507 | 100 | -> | Minus |
3R | 12660075..12660496 | 17..438 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:51:21 Download gff for
BS11486.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8485293..8485604 | 508..819 | 100 | -> | Minus |
arm_3R | 8485672..8485740 | 439..507 | 100 | -> | Minus |
arm_3R | 8485797..8486218 | 17..438 | 100 | | Minus |
BS11486.5prime Sequence
883 bp (770 high quality bases) assembled on 2006-05-08
> BS11486.5prime
GAAGTTATCAGTCGACATGACGACAGCCAAATGGATTTGGCGCTTGGCGC
TGAGCATCTTGCTGGTCGTGGGCTTTGTGGCTGCGGAAAAGCCGACTGGC
TATCATCGCGAGATTTGCCAATACCGCAAGGGCAAACATATCCAGCCCAT
GAGTGTTTATCACAATCGCCTGATGGCGATGCGCGAACAAATGCAGATTA
GAGCCACGCTGCAGGGACCGGAGATCTATGGCTACATACTGCCCTCCACG
GATGAGCATCTCAACCAGGAGGTGGCAGCGCGAGATCAGAGATTGCGATA
TCTGTCCGGCTTCTCTGGAGTGCGTGCCTTTGCTGCCGTGACCAGTCACG
GAGCAGCCATTTGGGTGGAGAACAGATATGCCCAGCAGGCCGATGGAGAG
CTGGAGTGCGACTGGGAGATCTATCTGACCAGCGGGAATGTATCAGTGGC
CGACTGGTTGGGGAGCCATGTTCACATCGACAAGCGAGTGGGTGCCGATC
CCCATCTGGTGCCGCACTCCCTTTGGGTTCAGTGGGAGCGAGAGCTGGAG
GACAAGTTCCTTAAGCTGGTCAGGATCAATACCAATCTGGTGGATCACAT
TTGGGGCGATGAGCGACCGGAGATGCCCAAGAACCAGGTGATAAAAGTGC
ACGAGAAGCACTTCGCCGGCGAGAGTTGGCAGGACAAGGTCAAGGAGTTG
AGAAGGCGACTGGCGCATCTGGGCTGCGATGCCATGGTGGTCACTTCGCT
CACCGAGATTGCCTACTTGCTAAACATTCGGGGCACAGACATTCCGTATA
CTCCTGTGATTAAGTCATACGCCGTGATCAGTCGGGATGATATATTCTTC
TATGTGGACCACTCAAAGATTAATCTGGGCATT
BS11486.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6225-PA | 2115 | CG6225-RA | 1..867 | 17..883 | 4310 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:58:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6225-RB | 2952 | CG6225-RB | 474..1340 | 17..883 | 4320 | 99.9 | Plus |
CG6225-RA | 2726 | CG6225-RA | 248..1114 | 17..883 | 4320 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:58:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12658272..12658946 | 140..814 | 3375 | 100 | Plus |
3R | 32079331 | 3R | 12658136..12658210 | 65..139 | 375 | 100 | Plus |
3R | 32079331 | 3R | 12659002..12659072 | 813..883 | 340 | 98.6 | Plus |
3R | 32079331 | 3R | 12656854..12656902 | 17..65 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:58:41 has no hits.
BS11486.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:45 Download gff for
BS11486.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6225-PA | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:41:53 Download gff for
BS11486.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6225-PA | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:19:38 Download gff for
BS11486.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6225-RA | 248..1114 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:09:55 Download gff for
BS11486.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6225-RA | 248..1114 | 17..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:09:55 Download gff for
BS11486.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12656854..12656902 | 17..65 | 100 | -> | Plus |
3R | 12658137..12658210 | 66..139 | 100 | -> | Plus |
3R | 12658272..12658946 | 140..814 | 100 | -> | Plus |
3R | 12659004..12659072 | 815..883 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:19:38 Download gff for
BS11486.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8482576..8482624 | 17..65 | 100 | -> | Plus |
arm_3R | 8483859..8483932 | 66..139 | 100 | -> | Plus |
arm_3R | 8483994..8484668 | 140..814 | 100 | -> | Plus |
arm_3R | 8484726..8484794 | 815..883 | 98 | | Plus |
BS11486.pep Sequence
Translation from 16 to 2130
> BS11486.pep
MTTAKWIWRLALSILLVVGFVAAEKPTGYHREICQYRKGKHIQPMSVYHN
RLMAMREQMQIRATLQGPEIYGYILPSTDEHLNQEVAARDQRLRYLSGFS
GVRAFAAVTSHGAAIWVENRYAQQADGELECDWEIYLTSGNVSVADWLGS
HVHIDKRVGADPHLVPHSLWVQWERELEDKFLKLVRINTNLVDHIWGDER
PEMPKNQVIKVHEKHFAGESWQDKVKELRRRLAHLGCDAMVVTSLTEIAY
LLNIRGTDIPYTPVIKSYAVISRDDIFFYVDHSKISLGIDLHLRTDCFNE
DCVKIKEYNQIWSDIRTYAQIWKRVLVPAPCVQDLGASEAIYTSMPGKIV
VWEISPIIFMRAQKNSDEQAGMRRAHIRDGAAICEAMSNMETRFHTEQWT
EEKIKYEVELWRLSQKHAKGLSLRTVVAYGEHSALPYYISSNVTNIEVSD
QSLLVIESGGQYLEGTTDVSRTFIFGEPTHEMKKAYTNVLAGILHLAQLK
FPSDLKPSEVDALVRSMVWKDMTDFPQATGHGIGSFGSVEEPPISVSYGK
NSSFHFKQGYFFSSESGYYKRDDFGVRLKNVLEVVDTGHTHPSGARFLAF
RDVTMVPYEPKLIDSTLLSAAEKRLLNEYNAKIRNDIGDELKRLGNMRAF
YWMMNQTRHIREYLPEDEYRSATGAGSCGHSASPLILLGLGLMVILSAII
PSRS*
BS11486.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:11:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6225-PB | 704 | CG6225-PB | 1..704 | 1..704 | 3708 | 100 | Plus |
CG6225-PA | 704 | CG6225-PA | 1..704 | 1..704 | 3708 | 100 | Plus |
ApepP-PB | 613 | CG6291-PB | 9..613 | 52..660 | 830 | 31.4 | Plus |
ApepP-PA | 613 | CG6291-PA | 9..613 | 52..660 | 830 | 31.4 | Plus |