Clone BS11488 Report

Search the DGRC for BS11488

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:114
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG9588-RA
Protein status:BS11488.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11488.3prime Sequence

693 bp (692 high quality bases) assembled on 2006-05-08

> BS11488.3prime
ATGGTCTAGAAAGCTTTCAGTGATCCATCGCCTCGGGCGGCAGGACGATG
TTGCAGCCCAGGAGACCGCGTCCACTCCACGTTTTCGGCACCAGGATGAG
GTCCAACTGCTGCTCGCCGCGCTTCACTTTCAGCTGGACATTCTGGCTCT
GCATGTTGCGCACCAGCTCGCCAATCTGGGCGAGATCTCCCTTGAAGTTG
CCGCTATTGATGGAGCCAAAGCGGAGGATGGCATCGCCGGCACAGAGACC
AGCTCTTTCGGCGGGCGAATCGGGACTGACCAGATTGACCACCACGATGG
CGCGTGCAGGAGCAAGATCCGTGATATTAGCGCCACCGGGTGAACGGTCG
CTGTCCAGGTCCAAAGCGGAGGCGCGGTTCACCAGCTCCGGATCTGTGGT
GGCAATCTCGCTGTGATATTGGTTGAGCAGCGTCTGGATCTGGTTCATCA
GCTCCTTGTGGTCGTTCTGCAGGCAGATGATCGTCTGTCGCGCCAGGCGC
ACCTGGTAAACGTCGATGTCGTTGCGCGGAAAACCCTCGGCGTCCACCAG
TGGTCCACTCATGCCCACATTGTCGTTGGCGGCCAGGATCTGTCCGTTTC
TGTTGATCTGCGCCTCCAGCTGCTTTTTAGCGTTAATCAGACGCTCCAGG
CGCTCCTTGGTCGTCGTCCCAGCGGCCATGTCGACTGATAACT

BS11488.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG9588-PA 663 CG9588-RA 1..663 679..17 3315 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG9588-RA 1226 CG9588-RA 152..815 680..17 3320 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13675800..13676127 250..577 1640 100 Plus
3R 32079331 3R 13675503..13675736 17..250 1170 100 Plus
3R 32079331 3R 13676428..13676530 578..680 515 100 Plus
Blast to na_te.dros performed on 2015-02-12 18:54:07 has no hits.

BS11488.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:48 Download gff for BS11488.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9588-PA 1..663 17..679 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:41:58 Download gff for BS11488.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9588-PA 1..663 17..679 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:50:13 Download gff for BS11488.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9588-RA 149..824 10..686 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:33:22 Download gff for BS11488.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9588-RA 149..824 10..686 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:33:22 Download gff for BS11488.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13675494..13675736 10..250 98 <- Plus
3R 13675801..13676127 251..577 100 <- Plus
3R 13676428..13676533 578..686 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:50:13 Download gff for BS11488.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9501216..9501458 10..250 98 <- Plus
arm_3R 9501523..9501849 251..577 100 <- Plus
arm_3R 9502150..9502255 578..686 97   Plus

BS11488.5prime Sequence

693 bp (692 high quality bases) assembled on 2006-05-08

> BS11488.5prime
GAAGTTATCAGTCGACATGGCCGCTGGGACGACGACCAAGGAGCGCCTGG
AGCGTCTGATTAACGCTAAAAAGCAGCTGGAGGCGCAGATCAACAGAAAC
GGACAGATCCTGGCCGCCAACGACAATGTGGGCATGAGTGGACCACTGGT
GGACGCCGAGGGTTTTCCGCGCAACGACATCGACGTTTACCAGGTGCGCC
TGGCGCGACAGACGATCATCTGCCTGCAGAACGACCACAAGGAGCTGATG
AACCAGATCCAGACGCTGCTCAACCAATATCACAGCGAGATTGCCACCAC
AGATCCGGAGCTGGTGAACCGCGCCTCCGCTTTGGACCTGGACAGCGACC
GTTCACCCGGTGGCGCTAATATCACGGATCTTGCTCCTGCACGCGCCATC
GTGGTGGTCAATCTGGTCAGTCCCGATTCGCCCGCCGAAAGAGCTGGTCT
CTGTGCCGGCGATGCCATCCTCCGCTTTGGCTCCATCAATAGCGGCAACT
TCAAGGGAGATCTCGCCCAGATTGGCGAGCTGGTGCGCAACATGCAGAGC
CAGAATGTCCAGCTGAAAGTGAAGCGCGGCGAGCAGCAGTTGGACCTCAT
CCTGGTGCCGAAAACGTGGAGTGGACGCGGTCTCCTGGGCTGCAACATCG
TCCTGCCGCCCGAGGCGATGGATCACTGAAAGCTTTCTAGACC

BS11488.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG9588-PA 663 CG9588-RA 1..663 17..679 3315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:20:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG9588-RA 1226 CG9588-RA 152..815 16..679 3320 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:20:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13675800..13676127 446..119 1640 100 Minus
3R 32079331 3R 13675503..13675736 679..446 1170 100 Minus
3R 32079331 3R 13676428..13676530 118..16 515 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:20:48 has no hits.

BS11488.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:49 Download gff for BS11488.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9588-PA 1..663 17..679 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:41:59 Download gff for BS11488.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9588-PA 1..663 17..679 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:47:54 Download gff for BS11488.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9588-RA 149..824 10..686 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:12 Download gff for BS11488.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9588-RA 149..824 10..686 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:51:12 Download gff for BS11488.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13675494..13675736 446..686 98 <- Minus
3R 13675801..13676127 119..445 100 <- Minus
3R 13676428..13676533 10..118 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:47:54 Download gff for BS11488.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9501216..9501458 446..686 98 <- Minus
arm_3R 9501523..9501849 119..445 100 <- Minus
arm_3R 9502150..9502255 10..118 97   Minus

BS11488.complete Sequence

695 bp assembled on 2006-11-01

GenBank Submission: FJ636888

> BS11488.complete
GAAGTTATCAGTCGACATGGCCGCTGGGACGACGACCAAGGAGCGCCTGG
AGCGTCTGATTAACGCTAAAAAGCAGCTGGAGGCGCAGATCAACAGAAAC
GGACAGATCCTGGCCGCCAACGACAATGTGGGCATGAGTGGACCACTGGT
GGACGCCGAGGGTTTTCCGCGCAACGACATCGACGTTTACCAGGTGCGCC
TGGCGCGACAGACGATCATCTGCCTGCAGAACGACCACAAGGAGCTGATG
AACCAGATCCAGACGCTGCTCAACCAATATCACAGCGAGATTGCCACCAC
AGATCCGGAGCTGGTGAACCGCGCCTCCGCTTTGGACCTGGACAGCGACC
GTTCACCCGGTGGCGCTAATATCACGGATCTTGCTCCTGCACGCGCCATC
GTGGTGGTCAATCTGGTCAGTCCCGATTCGCCCGCCGAAAGAGCTGGTCT
CTGTGCCGGCGATGCCATCCTCCGCTTTGGCTCCATCAATAGCGGCAACT
TCAAGGGAGATCTCGCCCAGATTGGCGAGCTGGTGCGCAACATGCAGAGC
CAGAATGTCCAGCTGAAAGTGAAGCGCGGCGAGCAGCAGTTGGACCTCAT
CCTGGTGCCGAAAACGTGGAGTGGACGCGGTCTCCTGGGCTGCAACATCG
TCCTGCCGCCCGAGGCGATGGATCACTGAAAGCTTTCTAGACCAT

BS11488.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:27:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9588-RA 663 CG9588-PA 1..663 17..679 3315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG9588-RA 1226 CG9588-RA 152..815 16..679 3320 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:27:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13675800..13676127 446..119 1640 100 Minus
3R 32079331 3R 13675503..13675736 679..446 1170 100 Minus
3R 32079331 3R 13676428..13676530 118..16 515 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:27:21 has no hits.

BS11488.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:29 Download gff for BS11488.complete
Subject Subject Range Query Range Percent Splice Strand
CG9588-RA 1..663 17..679 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:51 Download gff for BS11488.complete
Subject Subject Range Query Range Percent Splice Strand
CG9588-RA 145..820 10..686 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:24 Download gff for BS11488.complete
Subject Subject Range Query Range Percent Splice Strand
CG9588-RA 153..814 17..678 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:29 Download gff for BS11488.complete
Subject Subject Range Query Range Percent Splice Strand
CG9588-RA 145..820 10..686 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:09 Download gff for BS11488.complete
Subject Subject Range Query Range Percent Splice Strand
CG9588-RA 153..814 17..678 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:09 Download gff for BS11488.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13675801..13676127 119..445 100 <- Minus
3R 13676428..13676529 17..118 100   Minus
3R 13675504..13675736 446..678 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:24 Download gff for BS11488.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9501226..9501458 446..678 100 <- Minus
arm_3R 9501523..9501849 119..445 100 <- Minus
arm_3R 9502150..9502251 17..118 100   Minus

BS11488.pep Sequence

Translation from 16 to 678

> BS11488.pep
MAAGTTTKERLERLINAKKQLEAQINRNGQILAANDNVGMSGPLVDAEGF
PRNDIDVYQVRLARQTIICLQNDHKELMNQIQTLLNQYHSEIATTDPELV
NRASALDLDSDRSPGGANITDLAPARAIVVVNLVSPDSPAERAGLCAGDA
ILRFGSINSGNFKGDLAQIGELVRNMQSQNVQLKVKRGEQQLDLILVPKT
WSGRGLLGCNIVLPPEAMDH*

BS11488.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG9588-PA 220 CG9588-PA 1..220 1..220 1116 100 Plus