Clone Sequence Records
BS11488.3prime Sequence
693 bp (692 high quality bases) assembled on 2006-05-08
> BS11488.3prime
ATGGTCTAGAAAGCTTTCAGTGATCCATCGCCTCGGGCGGCAGGACGATG
TTGCAGCCCAGGAGACCGCGTCCACTCCACGTTTTCGGCACCAGGATGAG
GTCCAACTGCTGCTCGCCGCGCTTCACTTTCAGCTGGACATTCTGGCTCT
GCATGTTGCGCACCAGCTCGCCAATCTGGGCGAGATCTCCCTTGAAGTTG
CCGCTATTGATGGAGCCAAAGCGGAGGATGGCATCGCCGGCACAGAGACC
AGCTCTTTCGGCGGGCGAATCGGGACTGACCAGATTGACCACCACGATGG
CGCGTGCAGGAGCAAGATCCGTGATATTAGCGCCACCGGGTGAACGGTCG
CTGTCCAGGTCCAAAGCGGAGGCGCGGTTCACCAGCTCCGGATCTGTGGT
GGCAATCTCGCTGTGATATTGGTTGAGCAGCGTCTGGATCTGGTTCATCA
GCTCCTTGTGGTCGTTCTGCAGGCAGATGATCGTCTGTCGCGCCAGGCGC
ACCTGGTAAACGTCGATGTCGTTGCGCGGAAAACCCTCGGCGTCCACCAG
TGGTCCACTCATGCCCACATTGTCGTTGGCGGCCAGGATCTGTCCGTTTC
TGTTGATCTGCGCCTCCAGCTGCTTTTTAGCGTTAATCAGACGCTCCAGG
CGCTCCTTGGTCGTCGTCCCAGCGGCCATGTCGACTGATAACT
BS11488.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9588-PA | 663 | CG9588-RA | 1..663 | 679..17 | 3315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:54:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9588-RA | 1226 | CG9588-RA | 152..815 | 680..17 | 3320 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:54:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13675800..13676127 | 250..577 | 1640 | 100 | Plus |
3R | 32079331 | 3R | 13675503..13675736 | 17..250 | 1170 | 100 | Plus |
3R | 32079331 | 3R | 13676428..13676530 | 578..680 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:54:07 has no hits.
BS11488.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:48 Download gff for
BS11488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9588-PA | 1..663 | 17..679 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:41:58 Download gff for
BS11488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9588-PA | 1..663 | 17..679 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:50:13 Download gff for
BS11488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9588-RA | 149..824 | 10..686 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:33:22 Download gff for
BS11488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9588-RA | 149..824 | 10..686 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:33:22 Download gff for
BS11488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13675494..13675736 | 10..250 | 98 | <- | Plus |
3R | 13675801..13676127 | 251..577 | 100 | <- | Plus |
3R | 13676428..13676533 | 578..686 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:50:13 Download gff for
BS11488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9501216..9501458 | 10..250 | 98 | <- | Plus |
arm_3R | 9501523..9501849 | 251..577 | 100 | <- | Plus |
arm_3R | 9502150..9502255 | 578..686 | 97 | | Plus |
BS11488.5prime Sequence
693 bp (692 high quality bases) assembled on 2006-05-08
> BS11488.5prime
GAAGTTATCAGTCGACATGGCCGCTGGGACGACGACCAAGGAGCGCCTGG
AGCGTCTGATTAACGCTAAAAAGCAGCTGGAGGCGCAGATCAACAGAAAC
GGACAGATCCTGGCCGCCAACGACAATGTGGGCATGAGTGGACCACTGGT
GGACGCCGAGGGTTTTCCGCGCAACGACATCGACGTTTACCAGGTGCGCC
TGGCGCGACAGACGATCATCTGCCTGCAGAACGACCACAAGGAGCTGATG
AACCAGATCCAGACGCTGCTCAACCAATATCACAGCGAGATTGCCACCAC
AGATCCGGAGCTGGTGAACCGCGCCTCCGCTTTGGACCTGGACAGCGACC
GTTCACCCGGTGGCGCTAATATCACGGATCTTGCTCCTGCACGCGCCATC
GTGGTGGTCAATCTGGTCAGTCCCGATTCGCCCGCCGAAAGAGCTGGTCT
CTGTGCCGGCGATGCCATCCTCCGCTTTGGCTCCATCAATAGCGGCAACT
TCAAGGGAGATCTCGCCCAGATTGGCGAGCTGGTGCGCAACATGCAGAGC
CAGAATGTCCAGCTGAAAGTGAAGCGCGGCGAGCAGCAGTTGGACCTCAT
CCTGGTGCCGAAAACGTGGAGTGGACGCGGTCTCCTGGGCTGCAACATCG
TCCTGCCGCCCGAGGCGATGGATCACTGAAAGCTTTCTAGACC
BS11488.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9588-PA | 663 | CG9588-RA | 1..663 | 17..679 | 3315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:20:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9588-RA | 1226 | CG9588-RA | 152..815 | 16..679 | 3320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:20:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13675800..13676127 | 446..119 | 1640 | 100 | Minus |
3R | 32079331 | 3R | 13675503..13675736 | 679..446 | 1170 | 100 | Minus |
3R | 32079331 | 3R | 13676428..13676530 | 118..16 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:20:48 has no hits.
BS11488.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:49 Download gff for
BS11488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9588-PA | 1..663 | 17..679 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:41:59 Download gff for
BS11488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9588-PA | 1..663 | 17..679 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:47:54 Download gff for
BS11488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9588-RA | 149..824 | 10..686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:12 Download gff for
BS11488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9588-RA | 149..824 | 10..686 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:51:12 Download gff for
BS11488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13675494..13675736 | 446..686 | 98 | <- | Minus |
3R | 13675801..13676127 | 119..445 | 100 | <- | Minus |
3R | 13676428..13676533 | 10..118 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:47:54 Download gff for
BS11488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9501216..9501458 | 446..686 | 98 | <- | Minus |
arm_3R | 9501523..9501849 | 119..445 | 100 | <- | Minus |
arm_3R | 9502150..9502255 | 10..118 | 97 | | Minus |
BS11488.complete Sequence
695 bp assembled on 2006-11-01
GenBank Submission: FJ636888
> BS11488.complete
GAAGTTATCAGTCGACATGGCCGCTGGGACGACGACCAAGGAGCGCCTGG
AGCGTCTGATTAACGCTAAAAAGCAGCTGGAGGCGCAGATCAACAGAAAC
GGACAGATCCTGGCCGCCAACGACAATGTGGGCATGAGTGGACCACTGGT
GGACGCCGAGGGTTTTCCGCGCAACGACATCGACGTTTACCAGGTGCGCC
TGGCGCGACAGACGATCATCTGCCTGCAGAACGACCACAAGGAGCTGATG
AACCAGATCCAGACGCTGCTCAACCAATATCACAGCGAGATTGCCACCAC
AGATCCGGAGCTGGTGAACCGCGCCTCCGCTTTGGACCTGGACAGCGACC
GTTCACCCGGTGGCGCTAATATCACGGATCTTGCTCCTGCACGCGCCATC
GTGGTGGTCAATCTGGTCAGTCCCGATTCGCCCGCCGAAAGAGCTGGTCT
CTGTGCCGGCGATGCCATCCTCCGCTTTGGCTCCATCAATAGCGGCAACT
TCAAGGGAGATCTCGCCCAGATTGGCGAGCTGGTGCGCAACATGCAGAGC
CAGAATGTCCAGCTGAAAGTGAAGCGCGGCGAGCAGCAGTTGGACCTCAT
CCTGGTGCCGAAAACGTGGAGTGGACGCGGTCTCCTGGGCTGCAACATCG
TCCTGCCGCCCGAGGCGATGGATCACTGAAAGCTTTCTAGACCAT
BS11488.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:27:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9588-RA | 663 | CG9588-PA | 1..663 | 17..679 | 3315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:27:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9588-RA | 1226 | CG9588-RA | 152..815 | 16..679 | 3320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:27:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13675800..13676127 | 446..119 | 1640 | 100 | Minus |
3R | 32079331 | 3R | 13675503..13675736 | 679..446 | 1170 | 100 | Minus |
3R | 32079331 | 3R | 13676428..13676530 | 118..16 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:27:21 has no hits.
BS11488.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:29 Download gff for
BS11488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9588-RA | 1..663 | 17..679 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:51 Download gff for
BS11488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9588-RA | 145..820 | 10..686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:24 Download gff for
BS11488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9588-RA | 153..814 | 17..678 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:29 Download gff for
BS11488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9588-RA | 145..820 | 10..686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:09 Download gff for
BS11488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9588-RA | 153..814 | 17..678 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:09 Download gff for
BS11488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13675801..13676127 | 119..445 | 100 | <- | Minus |
3R | 13676428..13676529 | 17..118 | 100 | | Minus |
3R | 13675504..13675736 | 446..678 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:24 Download gff for
BS11488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9501226..9501458 | 446..678 | 100 | <- | Minus |
arm_3R | 9501523..9501849 | 119..445 | 100 | <- | Minus |
arm_3R | 9502150..9502251 | 17..118 | 100 | | Minus |
BS11488.pep Sequence
Translation from 16 to 678
> BS11488.pep
MAAGTTTKERLERLINAKKQLEAQINRNGQILAANDNVGMSGPLVDAEGF
PRNDIDVYQVRLARQTIICLQNDHKELMNQIQTLLNQYHSEIATTDPELV
NRASALDLDSDRSPGGANITDLAPARAIVVVNLVSPDSPAERAGLCAGDA
ILRFGSINSGNFKGDLAQIGELVRNMQSQNVQLKVKRGEQQLDLILVPKT
WSGRGLLGCNIVLPPEAMDH*
BS11488.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9588-PA | 220 | CG9588-PA | 1..220 | 1..220 | 1116 | 100 | Plus |