Clone Sequence Records
BS11490.3prime Sequence
909 bp (880 high quality bases) assembled on 2006-05-08
> BS11490.3prime
ATGGTCTAGAAAGCTTCTACAACCAGACGAGAAATCCCCAGATCAGAACC
GCCAACGTAAGTCCGATCTGCAGGCCCAAAGTTAAAGTAAGGGCAAAGTA
GAGAACGGCGAAGATGACCACATAGCCCGCGTAGTACAGGACGTTAAAGA
CCTTCCAGTAGTTGCGATGCCAATCCGTGGTCACTGCCGACTCCTTGAAG
TAGAAACGCCGGATTCCTATCAGACACCGATCGATGAACTCCGACCAATC
GCACTGACTGGCATCGAAATTATAGCGCCTTCGATCGCTCTCCGGTATTA
ATGCCGATATACGCAGCGCATTCTTCAAGGAATACCGGAAGTCCTTGTCC
AGGAAGTAATCAAAGGCCTTGGTACCTTTCTGGAACACCCGCATGTACTC
GTAGGCTGTGTGCTGGGGCATTCCGATTCCGAATAGCTTCTCTGGTATGA
TAAAGACCATAGCTGGCAGCAAATGAAACAGATAGAAGAACAGATTGTAA
CGCCATCCGTTGCGCAATTTCGTCACCGGTTTCCAAACAAAACTGTTCGG
CGGATGCCGCTCCACACTATCGTTGATGATCGTGCAGAACTCGGCGAGAT
TCAGAGGATTAACCTCTCCCGACGTGCAATGTATGATCTCCGGCTGCTCC
AACTTCCGGGTGCCCACGTACCAGCCCATAACCAGTGATGAGTTGATCAC
ATAGTCGCATGGTATGATGTCGATCACAGCATTTGCATTCCCGCACATGG
TGCGAAAAATTCCCTTCACGAAGCCGGCCAAGAAGCCCAGGTGACCAGAG
TTTGCATTGCCCACCCAGCCCTTCATCGGGTGCTCCAGGGTTCCATAAAC
AATCGATGGCCTAACTATGGCTGCTGGCAGTCCCGACATCTCGGGCATCA
GCAAATTCT
BS11490.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8303-PA | 1632 | CG8303-RA | 740..1632 | 909..17 | 4440 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:23:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8303-RD | 2176 | CG8303-RD | 892..1784 | 909..17 | 4450 | 99.9 | Minus |
| CG8303-RC | 2200 | CG8303-RC | 916..1808 | 909..17 | 4450 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:22:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16595941..16596383 | 408..850 | 2215 | 100 | Plus |
| 2R | 25286936 | 2R | 16595623..16595880 | 150..407 | 1290 | 100 | Plus |
| 2R | 25286936 | 2R | 16595420..16595552 | 17..149 | 665 | 100 | Plus |
| 2R | 25286936 | 2R | 16596436..16596495 | 850..909 | 285 | 98.3 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:22:57 has no hits.
BS11490.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:53 Download gff for
BS11490.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8303-PA | 740..1632 | 17..909 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:42:04 Download gff for
BS11490.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8303-PA | 740..1632 | 17..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:11:45 Download gff for
BS11490.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8303-RC | 916..1813 | 12..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:31 Download gff for
BS11490.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8303-RC | 916..1813 | 12..909 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:31 Download gff for
BS11490.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16595623..16595880 | 150..407 | 100 | <- | Plus |
| 2R | 16595415..16595552 | 12..149 | 98 | <- | Plus |
| 2R | 16595941..16596382 | 408..849 | 100 | <- | Plus |
| 2R | 16596436..16596495 | 850..909 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:11:45 Download gff for
BS11490.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12482920..12483057 | 12..149 | 98 | <- | Plus |
| arm_2R | 12483128..12483385 | 150..407 | 100 | <- | Plus |
| arm_2R | 12483446..12483887 | 408..849 | 100 | <- | Plus |
| arm_2R | 12483941..12484000 | 850..909 | 98 | | Plus |
BS11490.5prime Sequence
901 bp (858 high quality bases) assembled on 2006-05-08
> BS11490.5prime
GAAGTTATCAGTCGACATGGCTGTCATCACGGAACATGGCGGCACCACCT
CCTCTCCCCCGGAAAACAACAATAGCATCGGAAACGGAAAACACCGGGTC
AATGGCCATCAGTTGAGCACCTCGCTGACCATACCGGAGTTCTTTGCCCA
CAAGAACATCTTTGTCACCGGCGGCACTGGATTCCTGGGCACCGTTCTTA
TCGAGGCTCTGCTGGACACACATCCCGACATTGGAACCATCTACGTTTTG
GTCCGGGGCAAGCGCAAGTTTGATCCGAACGAGCGGATTCGTCGCCTGCT
CCAAAAGCCGATTTTCGAGAAATACTCGGAGAAGACTCTGTCCAAGGTGG
TCCCAGTGGTTGGCGAACTGAGCGAACCAAACTTTGGCTTTGGCCCCGAG
CTCCTGCAGGAGCTGATCGATCGGGTCAATGTGATCTACCACAGTGCAGC
CACCATCAAGTTCAGCTCCCCGCTGCGCACCGCCATTCGCACCAATCTCA
CGGGAACGATGCGCACCATTGAGCTGGCCAAACAATTGAAGCAACTGGCG
GCGTACATCTATTGCTCCACGGCCTTCTGCAATAGCAACAATCGTGGTCT
GATTGCCGAGGAGGTGTACAAGTCACAGTTCGATCCGTACGAGATGATGA
AGATGGCCGAAGATGACTCCGCCTGGGAGGATTTCACCGATCAAAAGTGC
AAGGGCTATATCCGTGATCATCCCAATACGTATACGTTCACCAAGAATCT
GTCGGAGAATTTGCTGATGGCCGAGATGTCGGGACTGCCAGCAGCCATAG
TTAGGCCATCGATTGTTTATGGAACCCTGGAGCACCCGATGAAGGGCTGG
GTGGGCAATGCCAACTCTGGTCACCTGGGCTTCTTTGCCGGCTTCGTGAA
G
BS11490.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8303-PA | 1632 | CG8303-RA | 1..885 | 17..901 | 4375 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:56:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8303-RD | 2176 | CG8303-RD | 152..1037 | 16..901 | 4400 | 99.8 | Plus |
| CG8303-RC | 2200 | CG8303-RC | 176..1061 | 16..901 | 4400 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:56:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16596436..16596941 | 815..310 | 2530 | 100 | Minus |
| 2R | 25286936 | 2R | 16597904..16598198 | 310..16 | 1475 | 100 | Minus |
| 2R | 25286936 | 2R | 16596297..16596383 | 901..815 | 405 | 97.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:56:05 has no hits.
BS11490.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:54 Download gff for
BS11490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8303-PA | 1..885 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:42:06 Download gff for
BS11490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8303-PA | 1..885 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:44:52 Download gff for
BS11490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8303-RC | 173..1061 | 9..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:32:18 Download gff for
BS11490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8303-RC | 173..1061 | 9..901 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:32:18 Download gff for
BS11490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16596297..16596382 | 816..901 | 97 | <- | Minus |
| 2R | 16596436..16596940 | 311..815 | 100 | <- | Minus |
| 2R | 16597904..16598201 | 9..310 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:44:52 Download gff for
BS11490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12483802..12483887 | 816..901 | 97 | <- | Minus |
| arm_2R | 12483941..12484445 | 311..815 | 100 | <- | Minus |
| arm_2R | 12485409..12485706 | 9..310 | 98 | | Minus |
BS11490.complete Sequence
1664 bp assembled on 2006-11-01
GenBank Submission: KX804885
> BS11490.complete
GAAGTTATCAGTCGACATGGCTGTCATCACGGAACATGGCGGCACCACCT
CCTCTCCCCCGGAAAACAACAATAGCATCGGAAACGGAAAACACCGGGTC
AATGGCCATCAGTTGAGCACCTCGCTGACCATACCGGAGTTCTTTGCCCA
CAAGAACATCTTTGTCACCGGCGGCACTGGATTCCTGGGCACCGTTCTTA
TCGAGGCTCTGCTGGACACACATCCCGACATTGGAACCATCTACGTTTTG
GTCCGGGGCAAGCGCAAGTTTGATCCGAACGAGCGGATTCGTCGCCTGCT
CCAAAAGCCGATTTTCGAGAAATACTCGGAGAAGACTCTGTCCAAGGTGG
TCCCAGTGGTTGGCGAACTGAGCGAACCAAACTTTGGCTTTGGCCCCGAG
CTCCTGCAGGAGCTGATCGATCGGGTCAATGTGATCTACCACAGTGCAGC
CACCATCAAGTTCAGCTCCCCGCTGCGCACCGCCATTCGCACCAATCTCA
CGGGAACGATGCGCACCATTGAGCTGGCCAAACAATTGAAGCAACTGGCG
GCGTACATCTATTGCTCCACGGCCTTCTGCAATAGCAACAATCGTGGTCT
GATTGCCGAGGAGGTGTACAAGTCACAGTTCGATCCGTACGAGATGATGA
AGATGGCCGAAGATGACTCCGCCTGGGAGGATTTCACCGATCAAAAGTGC
AAGGGCTATATCCGTGATCATCCCAATACGTATACGTTCACCAAGAATCT
GTCGGAGAATTTGCTGATGGCCGAGATGTCGGGACTGCCAGCAGCCATAG
TTAGGCCATCGATTGTTTATGGAACCCTGGAGCACCCGATGAAGGGCTGG
GTGGGCAATGCAAACTCTGGTCACCTGGGCTTCTTGGCCGGCTTCGTGAA
GGGAATTTTTCGCACCATGTGCGGGAATGCAAATGCTGTGATCGACATCA
TACCATGCGACTATGTGATCAACTCATCACTGGTTATGGGCTGGTACGTG
GGCACCCGGAAGTTGGAGCAGCCGGAGATCATACATTGCACGTCGGGAGA
GGTTAATCCTCTGAATCTCGCCGAGTTCTGCACGATCATCAACGATAGTG
TGGAGCGGCATCCGCCGAACAGTTTTGTTTGGAAACCGGTGACGAAATTG
CGCAACGGATGGCGTTACAATCTGTTCTTCTATCTGTTTCATTTGCTGCC
AGCTATGGTCTTTATCATACCAGAGAAGCTATTCGGAATCGGAATGCCCC
AGCACACAGCCTACGAGTACATGCGGGTGTTCCAGAAAGGTACCAAGGCC
TTTGATTACTTCCTGGACAAGGACTTCCGGTATTCCTTGAAGAATGCGCT
GCGTATATCGGCATTAATACCGGAGAGCGATCGAAGGCGCTATAATTTCG
ATGCCAGTCAGTGCGATTGGTCGGAGTTCATCGATCGGTGTCTGATAGGA
ATCCGGCGTTTCTACTTCAAGGAGTCGGCAGTGACCACGGATTGGCATCG
CAACTACTGGAAGGTCTTTAACGTCCTGTACTACGCGGGCTATGTGGTCA
TCTTCGCCGTTCTCTACTTTGCCCTTACTTTAACTTTGGGCCTGCAGATC
GGACTTACGTTGGCGGTTCTGATCTGGGGATTTCTCGTCTGGTTGTAGAA
GCTTTCTAGACCAT
BS11490.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:28:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8303-RD | 1632 | CG8303-PD | 1..1632 | 17..1648 | 8160 | 100 | Plus |
| CG8303-RC | 1632 | CG8303-PC | 1..1632 | 17..1648 | 8160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:28:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8303-RD | 2176 | CG8303-RD | 152..1784 | 16..1648 | 8165 | 100 | Plus |
| CG8303-RC | 2200 | CG8303-RC | 176..1808 | 16..1648 | 8165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:28:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16596436..16596941 | 815..310 | 2530 | 100 | Minus |
| 2R | 25286936 | 2R | 16595941..16596383 | 1257..815 | 2215 | 100 | Minus |
| 2R | 25286936 | 2R | 16597904..16598198 | 310..16 | 1475 | 100 | Minus |
| 2R | 25286936 | 2R | 16595623..16595880 | 1515..1258 | 1290 | 100 | Minus |
| 2R | 25286936 | 2R | 16595420..16595552 | 1648..1516 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:28:56 has no hits.
BS11490.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:28 Download gff for
BS11490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8303-RB | 228..1863 | 9..1648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:32 Download gff for
BS11490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8303-RB | 228..1868 | 9..1653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:06 Download gff for
BS11490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8303-RC | 177..1808 | 17..1648 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:28 Download gff for
BS11490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8303-RB | 228..1868 | 9..1653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:15 Download gff for
BS11490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8303-RC | 177..1808 | 17..1648 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:15 Download gff for
BS11490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16597904..16598197 | 17..310 | 100 | | Minus |
| 2R | 16595420..16595552 | 1516..1648 | 100 | <- | Minus |
| 2R | 16595623..16595880 | 1258..1515 | 100 | <- | Minus |
| 2R | 16595941..16596382 | 816..1257 | 100 | <- | Minus |
| 2R | 16596436..16596940 | 311..815 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:06 Download gff for
BS11490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12485409..12485702 | 17..310 | 100 | | Minus |
| arm_2R | 12482925..12483057 | 1516..1648 | 100 | <- | Minus |
| arm_2R | 12483128..12483385 | 1258..1515 | 100 | <- | Minus |
| arm_2R | 12483446..12483887 | 816..1257 | 100 | <- | Minus |
| arm_2R | 12483941..12484445 | 311..815 | 100 | <- | Minus |
BS11490.pep Sequence
Translation from 16 to 1647
> BS11490.pep
MAVITEHGGTTSSPPENNNSIGNGKHRVNGHQLSTSLTIPEFFAHKNIFV
TGGTGFLGTVLIEALLDTHPDIGTIYVLVRGKRKFDPNERIRRLLQKPIF
EKYSEKTLSKVVPVVGELSEPNFGFGPELLQELIDRVNVIYHSAATIKFS
SPLRTAIRTNLTGTMRTIELAKQLKQLAAYIYCSTAFCNSNNRGLIAEEV
YKSQFDPYEMMKMAEDDSAWEDFTDQKCKGYIRDHPNTYTFTKNLSENLL
MAEMSGLPAAIVRPSIVYGTLEHPMKGWVGNANSGHLGFLAGFVKGIFRT
MCGNANAVIDIIPCDYVINSSLVMGWYVGTRKLEQPEIIHCTSGEVNPLN
LAEFCTIINDSVERHPPNSFVWKPVTKLRNGWRYNLFFYLFHLLPAMVFI
IPEKLFGIGMPQHTAYEYMRVFQKGTKAFDYFLDKDFRYSLKNALRISAL
IPESDRRRYNFDASQCDWSEFIDRCLIGIRRFYFKESAVTTDWHRNYWKV
FNVLYYAGYVVIFAVLYFALTLTLGLQIGLTLAVLIWGFLVWL*
BS11490.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8303-PD | 543 | CG8303-PD | 1..543 | 1..543 | 2889 | 100 | Plus |
| CG8303-PC | 543 | CG8303-PC | 1..543 | 1..543 | 2889 | 100 | Plus |
| CG5065-PE | 625 | CG5065-PE | 119..563 | 39..486 | 725 | 35.5 | Plus |
| CG5065-PD | 625 | CG5065-PD | 119..563 | 39..486 | 725 | 35.5 | Plus |
| CG5065-PC | 625 | CG5065-PC | 119..563 | 39..486 | 725 | 35.5 | Plus |
