Clone BS11495 Report

Search the DGRC for BS11495

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:114
Well:95
Vector:pDNR-Dual
Associated Gene/Transcriptloqs-RB
Protein status:BS11495.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11495.3prime Sequence

939 bp (884 high quality bases) assembled on 2006-05-08

> BS11495.3prime
ATGGTCTAGAAAGCTTCTACTTCTTGGTCATGATCTTCAAGTACTCGAGG
GCATTCTGGGCGGCATGCCGCTGGGCATCGGCAGCTGTTGGTCCGCTGCC
GTGGCAAACGCCAACGGGCAGCGTGGACAGTTGAACCAGGCACTGGAACT
GGCCAGAGAAGGTCTTCTCCTCTATGTCCACATAGGTCACCTCGAACTGG
TTCTCCGTGGCGATTTCGCCCAGCAGCTTGATGTAATCAATCTTGTTGTT
CTTCAAGCAAGTCTTCTGTAACTTAAGCAGTTTTTTGCCCGTTGCATTTT
TTAGGGTCTTATGGAACTGGGATACTTTGTTACTGTGCTGCGTGGTCAGT
GTCGGCACAGAGATATCTTTCAATTCACCATAATAATTTTCACTACTGCG
GGGTTCGCCCTCCAACTCGCCGCAGATGCTGTCGCTGATTTTGCCCGAAT
CGATGGGAGTCTCCTGCAGACGCATCCACATGCGGTGGGCGGCCAAGCGC
TTGGCTATCTTCTTGCTTTTGCCCTTGCCCATCTCGCGGTAGTTGAGTAT
CGAGCAGGCGATCGTAAAGAGCCGCTCGTGGGGAAGACCCACTTCCGTTT
CCGTTTCGTACGACGGCGGTGGCCATCGCCGTTGCATGCACATTTCCTGC
AACCAGCCAATCGGATTACCAACGGTCTTGTCGCTGGCATCTCCTCCGCC
TGTGGCATTGGCATTGCCGTCTCCTCCGCTTCCGGCGACCGTGAGCCCAG
TCACCGACGGACCAGCGGAGCTGCTAGGCGATTCCGGCAGCTGCGCGCCG
ATCAGCTTGTCGATGAGCGCACGGGCCGCCGCATGCTTGGCCTCTTTCTT
CGATCGTCCTGCCCCCATGGCCGTGAAGGGCGTATCCCTGTCTTTAAAGG
ACACGCGAAACCGGAAAGTCGGCTCATGTATGGCGCCCT

BS11495.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG6866-PB 1398 loqs-RB 476..1398 939..17 4540 99.6 Minus
CG6866-PA 1260 loqs-RA 476..1011 939..404 2605 99.4 Minus
CG6866-PC 1152 loqs-RC 476..1011 939..404 2605 99.4 Minus
CG6866-PA 1260 loqs-RA 1012..1260 265..17 1245 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
loqs-RB 2017 CG6866-RB 656..1578 939..17 4570 99.7 Minus
loqs-RF 2014 CG6866-RF 656..1575 939..17 4515 99.3 Minus
loqs-RD 1334 CG6866-RD 656..1191 939..404 2635 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:33:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13383737..13384022 689..404 1430 100 Minus
2L 23513712 2L 13384981..13385232 268..17 1260 100 Minus
2L 23513712 2L 13383415..13383664 939..690 1205 98.8 Minus
2L 23513712 2L 13384657..13384794 403..266 690 100 Minus
Blast to na_te.dros performed on 2015-02-03 07:33:58 has no hits.

BS11495.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:11:01 Download gff for BS11495.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6866-PB 476..1398 17..939 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:42:19 Download gff for BS11495.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6866-PB 476..1398 17..939 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:32:07 Download gff for BS11495.3prime
Subject Subject Range Query Range Percent Splice Strand
loqs-RB 656..1578 17..939 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:47:18 Download gff for BS11495.3prime
Subject Subject Range Query Range Percent Splice Strand
loqs-RB 656..1578 17..939 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:47:18 Download gff for BS11495.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13383415..13383664 690..939 98 -> Minus
2L 13383737..13384022 404..689 100 -> Minus
2L 13384657..13384794 266..403 100 -> Minus
2L 13384984..13385232 17..265 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:32:07 Download gff for BS11495.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13383415..13383664 690..939 98 -> Minus
arm_2L 13383737..13384022 404..689 100 -> Minus
arm_2L 13384657..13384794 266..403 100 -> Minus
arm_2L 13384984..13385232 17..265 100   Minus

BS11495.5prime Sequence

907 bp (774 high quality bases) assembled on 2006-05-08

> BS11495.5prime
GAAGTTATCAGTCGACATGGACCAGGAGAATTTCCACGGCTCCAGCTTGC
CGCAGCAGCTACAGAACCTCCACATCCAGCCGCAGCAGGCGTCCCCCAAT
CCTGTCCAGACGGGATTTGCTCCACGGCGGCACTATAATAACCTTGTCGG
CCTGGGCAATGGAAATGCCGTCAGTGGTAGTCCGGTGAAGGGTGCTCCGC
TGGGGCAGCGCCATGTGAAGCTCAAGAAGGAGAAGATATCCGCCCAGGTT
GCGCAGCTGTCTCAGCCAGGTCAGCTGCAGCTGTCAGATGTTGGTGATCC
TGCCTTGGCGGGCGGATCGGGCTTACAAGGTGGAGTCGGCCTTATGGGCG
TAATATTGCCCAGCGACGAGGCCTTAAAGTTCGTCAGCGAAACGGACGCC
AATGGACTGGCCATGAAGACGCCCGTCAGCATTCTGCAAGAGCTGCTAAG
CCGACGAGGAATTACTCCCGGCTATGAACTTGTCCAGATCGAGGGCGCCA
TACATGAGCCGACCTTCCGGTTTCGCGTGTCCTTTAAAGACAAGGATACG
CCCTTCACGGCCATGGGGGCAGGACGATCGAAGAAGGAGGCCAAGCATGC
GGCGGCCCGTGCGCTCATCGACAAGCTGATCGGCGCGCAGCTGCCGGAAT
CGCCTAGCAGCTCCGCTGGTCCGTCGGTGACTGGGCTCACGGTCGCCGGA
AGCGGAGGAGACGGCAATGCCAATGCCACAGGCGGAGGAGATGCCAGCGA
CAAGACCGTTGGTAATCCGATTGGCTGGTTGCAGGAAATGTGCATGCAAC
GGCGATGGCCACCGCCGTCGTACGAAACGGAAACGGAAGTGGGTCTTCCC
CACGAGCGGCTCTTTACGATCGCCTGCTCGATACTCAACTACCGCGAGAT
GGGCAAG

BS11495.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG6866-PB 1398 loqs-RB 1..891 17..907 4455 100 Plus
CG6866-PA 1260 loqs-RA 1..891 17..907 4455 100 Plus
CG6866-PC 1152 loqs-RC 1..891 17..907 4455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:05:31
Subject Length Description Subject Range Query Range Score Percent Strand
loqs-RD 1334 CG6866-RD 180..1071 16..907 4460 100 Plus
loqs-RF 2014 CG6866-RF 180..1071 16..907 4460 100 Plus
loqs-RE 1876 CG6866-RE 180..1071 16..907 4460 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:05:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13382939..13383664 16..741 3630 100 Plus
2L 23513712 2L 13383737..13383902 742..907 830 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:05:29 has no hits.

BS11495.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:11:02 Download gff for BS11495.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6866-PC 1..891 17..907 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:42:21 Download gff for BS11495.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6866-PC 1..891 17..907 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:51:41 Download gff for BS11495.5prime
Subject Subject Range Query Range Percent Splice Strand
loqs-RE 177..1071 9..907 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:03:57 Download gff for BS11495.5prime
Subject Subject Range Query Range Percent Splice Strand
loqs-RE 177..1071 9..907 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:03:57 Download gff for BS11495.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13382936..13383664 9..741 99 -> Plus
2L 13383737..13383902 742..907 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:51:41 Download gff for BS11495.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13382936..13383664 9..741 99 -> Plus
arm_2L 13383737..13383902 742..907 100   Plus

BS11495.complete Sequence

1430 bp assembled on 2006-11-01

GenBank Submission: FJ636889

> BS11495.complete
GAAGTTATCAGTCGACATGGACCAGGAGAATTTCCACGGCTCCAGCTTGC
CGCAGCAGCTACAGAACCTCCACATCCAGCCGCAGCAGGCGTCCCCCAAT
CCTGTCCAGACGGGATTTGCTCCACGGCGGCACTATAATAACCTTGTCGG
CCTGGGCAATGGAAATGCCGTCAGTGGTAGTCCGGTGAAGGGTGCTCCGC
TGGGGCAGCGCCATGTGAAGCTCAAGAAGGAGAAGATATCCGCCCAGGTT
GCGCAGCTGTCTCAGCCAGGTCAGCTGCAGCTGTCAGATGTTGGTGATCC
TGCCTTGGCGGGCGGATCGGGCTTACAAGGTGGAGTCGGCCTTATGGGCG
TAATATTGCCCAGCGACGAGGCCTTAAAGTTCGTCAGCGAAACGGACGCC
AATGGACTGGCCATGAAGACGCCCGTCAGCATTCTGCAAGAGCTGCTAAG
CCGACGAGGAATTACTCCCGGCTATGAACTTGTCCAGATCGAGGGCGCCA
TACATGAGCCGACCTTCCGGTTTCGCGTGTCCTTTAAAGACAAGGATACG
CCCTTCACGGCCATGGGGGCAGGACGATCGAAGAAGGAGGCCAAGCATGC
GGCGGCCCGTGCGCTCATCGACAAGCTGATCGGCGCGCAGCTGCCGGAAT
CGCCTAGCAGCTCCGCTGGTCCGTCGGTGACTGGGCTCACGGTCGCCGGA
AGCGGAGGAGACGGCAATGCCAATGCCACAGGCGGAGGAGATGCCAGCGA
CAAGACCGTTGGTAATCCGATTGGCTGGTTGCAGGAAATGTGCATGCAAC
GGCGATGGCCACCGCCGTCGTACGAAACGGAAACGGAAGTGGGTCTTCCC
CACGAGCGGCTCTTTACGATCGCCTGCTCGATACTCAACTACCGCGAGAT
GGGCAAGGGCAAAAGCAAGAAGATAGCCAAGCGCTTGGCCGCCCACCGCA
TGTGGATGCGTCTGCAGGAGACTCCCATCGATTCGGGCAAAATCAGCGAC
AGCATCTGCGGCGAGTTGGAGGGCGAACCCCGCAGTAGTGAAAATTATTA
TGGTGAATTGAAAGATATCTCTGTGCCGACACTGACCACGCAGCACAGTA
ACAAAGTATCCCAGTTCCATAAGACCCTAAAAAATGCAACGGGCAAAAAA
CTGCTTAAGTTACAGAAGACTTGCTTGAAGAACAACAAGATTGATTACAT
CAAGCTGCTGGGCGAAATCGCCACGGAGAACCAGTTCGAGGTGACCTATG
TGGACATAGAGGAGAAGACCTTCTCTGGCCAGTTCCAGTGCCTGGTTCAA
CTGTCCACGCTGCCCGTTGGCGTTTGCCACGGCAGCGGACCAACAGCTGC
CGATGCCCAGCGGCATGCCGCCCAGAATGCCCTCGAGTACTTGAAGATCA
TGACCAAGAAGTAGAAGCTTTCTAGACCAT

BS11495.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:35:19
Subject Length Description Subject Range Query Range Score Percent Strand
loqs-RB 1398 CG6866-PB 1..1398 17..1414 6990 100 Plus
loqs-RF 1395 CG6866-PF 1..1395 17..1414 6910 99.8 Plus
loqs-RD 1080 CG6866-PD 1..1011 17..1027 5055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:35:21
Subject Length Description Subject Range Query Range Score Percent Strand
loqs-RB 2017 CG6866-RB 180..1578 16..1414 6995 100 Plus
loqs-RF 2014 CG6866-RF 180..1575 16..1414 6915 99.8 Plus
loqs-RD 1334 CG6866-RD 180..1191 16..1027 5060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:35:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13382939..13383664 16..741 3630 100 Plus
2L 23513712 2L 13383737..13384022 742..1027 1430 100 Plus
2L 23513712 2L 13384981..13385232 1163..1414 1260 100 Plus
2L 23513712 2L 13384657..13384794 1028..1165 690 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:35:19 has no hits.

BS11495.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:29 Download gff for BS11495.complete
Subject Subject Range Query Range Percent Splice Strand
loqs-RB 1..1398 17..1414 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:34 Download gff for BS11495.complete
Subject Subject Range Query Range Percent Splice Strand
loqs-RB 181..1582 9..1414 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:13:32 Download gff for BS11495.complete
Subject Subject Range Query Range Percent Splice Strand
loqs-RB 181..1578 17..1414 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:29 Download gff for BS11495.complete
Subject Subject Range Query Range Percent Splice Strand
loqs-RB 181..1582 9..1414 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:47 Download gff for BS11495.complete
Subject Subject Range Query Range Percent Splice Strand
loqs-RB 181..1578 17..1414 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:25:47 Download gff for BS11495.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13382940..13383664 17..741 100 -> Plus
2L 13383737..13384022 742..1027 100 -> Plus
2L 13384657..13384794 1028..1165 100 -> Plus
2L 13384984..13385232 1166..1414 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:13:32 Download gff for BS11495.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13382940..13383664 17..741 100 -> Plus
arm_2L 13383737..13384022 742..1027 100 -> Plus
arm_2L 13384657..13384794 1028..1165 100 -> Plus
arm_2L 13384984..13385232 1166..1414 100   Plus

BS11495.pep Sequence

Translation from 16 to 1413

> BS11495.pep
MDQENFHGSSLPQQLQNLHIQPQQASPNPVQTGFAPRRHYNNLVGLGNGN
AVSGSPVKGAPLGQRHVKLKKEKISAQVAQLSQPGQLQLSDVGDPALAGG
SGLQGGVGLMGVILPSDEALKFVSETDANGLAMKTPVSILQELLSRRGIT
PGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAARAL
IDKLIGAQLPESPSSSAGPSVTGLTVAGSGGDGNANATGGGDASDKTVGN
PIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYREMGKGKS
KKIAKRLAAHRMWMRLQETPIDSGKISDSICGELEGEPRSSENYYGELKD
ISVPTLTTQHSNKVSQFHKTLKNATGKKLLKLQKTCLKNNKIDYIKLLGE
IATENQFEVTYVDIEEKTFSGQFQCLVQLSTLPVGVCHGSGPTAADAQRH
AAQNALEYLKIMTKK*

BS11495.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:04
Subject Length Description Subject Range Query Range Score Percent Strand
loqs-PB 465 CG6866-PB 1..465 1..465 2407 100 Plus
loqs-PF 464 CG6866-PF 1..464 1..465 2390 99.8 Plus
loqs-PA 419 CG6866-PA 1..419 1..465 2114 90.1 Plus
loqs-PE 418 CG6866-PE 1..418 1..465 2108 89.9 Plus
loqs-PC 383 CG6866-PC 1..345 1..345 1750 98 Plus