Clone BS11502 Report

Search the DGRC for BS11502

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:115
Well:2
Vector:pDNR-Dual
Associated Gene/Transcriptsvp-RC
Protein status:BS11502.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11502.3prime Sequence

900 bp (876 high quality bases) assembled on 2006-05-08

> BS11502.3prime
ATGGTCTAGAAAGCTTTCACATCGAAGGCAGATAGGGCCAGGAGAAACTG
TTGCCGCTCAGCAGCATATCGCGTATCAGCGTTTCAATTGGCGTTTTTCC
GACTAGACGCACAAAAAACAATTGCTCAATGACTTGTGAGGAGACCGTTC
GCAGCGATGGCAGTCTGAGAAGCAGCTTGCCGAATCTCGTGGGCTGGTTG
GGATACTGGGTCCGGCAGTATTCCTCGAGGGCGCACTGCGACTTCTCTTG
CAGGGATTCAATGTGCGTCACATCGGACAGGCCGCAGGCATCGGTGGTGA
AGAGCACGATCGCCTTGAGGCAGGAGTACTCCGCGGAGTCGACATGCAGC
GCCTTCAGCTTCTCCACCTGCTCCTGGAAGATGCGGATGTGGTCCATGAA
GGCCACCACACGATCGGCGGCCATCGGGGAGGCATGAAGTCCGGCGGCGG
CCAGCAGTGGCGCCACATGGAGCGGCATGGAGCACTGGCTGGCGTTTAGG
ACGAAGAGCTCTGACCAGACGAGCCGGAGCAGGGCCACCTGGTCGGTCAC
CTGCAGCTCCGGGAAGAAGGGTATGTTCTTGGCCCACTCGACCGCCGAGA
AGAGCAGTCGGGCGGCCAGTTCGCAGATGTTGTCGATGCCCATAATGTTG
TTGGGTTGCATGCACTGGCCATATCGCGAAGTCGGATACGGTTCCGCCCG
CAGCAGGAGCGAGATGTAGGAACTGAGGTACGAGTGCCCGTTAAAGCCGG
CAATGCCCATGGGATCCCCGTTGGCAATCTGGTACTGCCCATGCATGCCG
GCCAGACCGGGCTGAGTGGGTGGTACGCGTCCACGTTGAACAGCTTCGCG
TCTCATGCCCATTTTGAGGCACTTCTTCAATCGACAATATTGACATTGAT

BS11502.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG11502-PB 1632 svp-RB 749..1632 900..17 4420 100 Minus
CG11502-PC 846 svp-RC 1..846 862..17 4230 100 Minus
CG11502-PA 2241 svp-RA 749..1357 900..292 3045 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
svp-RE 3859 CG11502-RE 1192..2075 900..17 4420 100 Minus
svp-RB 3859 CG11502-RB 1192..2075 900..17 4420 100 Minus
svp-RC 2876 CG11502-RC 209..1092 900..17 4420 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12294006..12294559 845..292 2770 100 Minus
3R 32079331 3R 12300478..12300638 292..132 805 100 Minus
3R 32079331 3R 12300885..12301001 133..17 585 100 Minus
3R 32079331 3R 12290302..12290358 900..844 285 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:40:02 has no hits.

BS11502.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:11:06 Download gff for BS11502.3prime
Subject Subject Range Query Range Percent Splice Strand
svp-PB 749..1632 17..900 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:42:26 Download gff for BS11502.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11502-PB 749..1632 17..900 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:51:29 Download gff for BS11502.3prime
Subject Subject Range Query Range Percent Splice Strand
svp-RC 209..1092 17..900 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:00:44 Download gff for BS11502.3prime
Subject Subject Range Query Range Percent Splice Strand
svp-RC 209..1092 17..900 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:00:44 Download gff for BS11502.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12300885..12301001 17..133 100   Minus
3R 12300479..12300636 134..291 100 -> Minus
3R 12290302..12290358 844..900 100 -> Minus
3R 12294008..12294559 292..843 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:51:29 Download gff for BS11502.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8116024..8116080 844..900 100 -> Minus
arm_3R 8119730..8120281 292..843 100 -> Minus
arm_3R 8126201..8126358 134..291 100 -> Minus
arm_3R 8126607..8126723 17..133 100   Minus

BS11502.5prime Sequence

863 bp (796 high quality bases) assembled on 2006-05-08

> BS11502.5prime
GAAGTTATCAGTCGACATGTGCGCCTCCCCGTCCACGGCTCCCGGCTTCT
TCAATCCGCGCCCGCAATCCGGCGCGGAGCTGTCGGCCTTCGACATCGGC
CTGTCCCGCTCGATGGGGCTGGGCGTCCCGCCACACAGCGCCTGGCACGA
ACCGCCGGCCTCCCTCGGCGGTCACCTGCACGCCGCCTCCGCCGGACCGG
GCACCACCACCGGCAGCGTGGCGACGGGCGGCGGCGGTACCACTCCGAGC
AGCGTGGCCAGCCAGCAGTCGGCGGTGATCAAGCAGGATCTCTCTTGCCC
CAGCCTCAATCAGGCGGGATCCGGCCATCATCCTGGCATCAAGGAGGATC
TGTCCAGCAGCCTGCCCAGCGCCAATGGTGGATCCGCCGGTGGCCATCAC
TCCGGTTCCGGATCGGGTTCCGGTTCGGGCGTCAATCCCGGACACGGCTC
CGACATGCTGCCCCTGATCAAGGGCCATGGCCAGGACATGCTCACCAGCA
TCAAGGGACAGCCCACGGGCTGTGGCAGCACCACGCCCAGCTCCCAGGCG
AATAGCTCCCACTCGCAGAGCAGCAACAGTGGATCCCAGATCGACAGCAA
GCAGAACATCGAGTGCGTCGTCTACGGCGACAAGAGTTCCGGCAAGCACT
ACGGACAATTTACCTGCGAAGGTTGCAAATCTTTCTTCAAGCGCTCGGTG
CGACGTAATCTAACTTACTCTTGCCGCGGCAGCAGAAACTGTCCCATAGA
TCAACACCATCGCAATCAATGTCAATATTGTCGATTGAAGAAGTGCCTCA
AAATGGGCATGAGACGCGAAGCTGTTCAACGTGGACGCGTACCACCCACT
CAGCCCGGTCTGG

BS11502.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11502-PA 2241 svp-RA 1..847 17..863 4210 99.8 Plus
CG11502-PB 1632 svp-RB 1..847 17..863 4210 99.8 Plus
CG11502-PC 846 svp-RC 1..61 803..863 305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
svp-RE 3859 CG11502-RE 443..1290 16..863 4225 99.9 Plus
svp-RB 3859 CG11502-RB 443..1290 16..863 4225 99.9 Plus
svp-RA 3421 CG11502-RA 485..1332 16..863 4225 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:05:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12281594..12282251 16..673 3275 99.8 Plus
3R 32079331 3R 12290207..12290358 670..821 760 100 Plus
3R 32079331 3R 12294006..12294049 820..863 220 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:05:21 has no hits.

BS11502.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:11:07 Download gff for BS11502.5prime
Subject Subject Range Query Range Percent Splice Strand
svp-PA 1..847 17..863 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:42:28 Download gff for BS11502.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11502-PB 1..847 17..863 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:51:39 Download gff for BS11502.5prime
Subject Subject Range Query Range Percent Splice Strand
svp-RA 482..1332 13..863 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:03:37 Download gff for BS11502.5prime
Subject Subject Range Query Range Percent Splice Strand
svp-RA 482..1332 13..863 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:03:37 Download gff for BS11502.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12281591..12282249 13..671 99 -> Plus
3R 12290209..12290358 672..821 100 -> Plus
3R 12294008..12294049 822..863 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:51:39 Download gff for BS11502.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8107313..8107971 13..671 99 -> Plus
arm_3R 8115931..8116080 672..821 100 -> Plus
arm_3R 8119730..8119771 822..863 100   Plus

BS11502.complete Sequence

1664 bp assembled on 2006-11-01

GenBank Submission: FJ636890

> BS11502.complete
GAAGTTATCAGTCGACATGTGCGCCTCCCCGTCCACGGCTCCCGGCTTCT
TCAATCCGCGCCCGCAATCCGGCGCGGAGCTGTCGGCCTTCGACATCGGC
CTGTCCCGCTCGATGGGGCTGGGCGTCCCGCCACACAGCGCCTGGCACGA
ACCGCCGGCCTCCCTCGGCGGTCACCTGCACGCCGCCTCCGCCGGACCGG
GCACCACCACCGGCAGCGTGGCGACGGGCGGCGGCGGTACCACTCCGAGC
AGCGTGGCCAGCCAGCAGTCGGCGGTGATCAAGCAGGATCTCTCTTGCCC
CAGCCTCAATCAGGCGGGATCCGGCCATCATCCTGGCATCAAGGAGGATC
TGTCCAGCAGCCTGCCCAGCGCCAATGGTGGATCCGCCGGTGGCCATCAC
TCCGGTTCCGGATCGGGTTCCGGTTCGGGCGTCAATCCCGGACACGGCTC
CGACATGCTGCCCCTGATCAAGGGCCATGGCCAGGACATGCTCACCAGCA
TCAAGGGACAGCCCACGGGCTGTGGCAGCACCACGCCCAGCTCCCAGGCG
AATAGCTCCCACTCGCAGAGCAGCAACAGTGGATCCCAGATCGACAGCAA
GCAGAACATCGAGTGCGTCGTCTACGGCGACAAGAGTTCCGGCAAGCACT
ACGGACAATTTACCTGCGAAGGTTGCAAATCTTTCTTCAAGCGCTCGGTG
CGACGTAATCTAACTTACTCTTGCCGCGGCAGCAGAAACTGTCCCATAGA
TCAACACCATCGCAATCAATGTCAATATTGTCGATTGAAGAAGTGCCTCA
AAATGGGCATGAGACGCGAAGCTGTTCAACGTGGACGCGTACCACCCACT
CAGCCCGGTCTGGCCGGCATGCATGGGCAGTACCAGATTGCCAACGGGGA
TCCCATGGGCATTGCCGGCTTTAACGGGCACTCGTACCTCAGTTCCTACA
TCTCGCTCCTGCTGCGGGCGGAACCGTATCCGACTTCGCGATATGGCCAG
TGCATGCAACCCAACAACATTATGGGCATCGACAACATCTGCGAACTGGC
CGCCCGACTGCTCTTCTCGGCGGTCGAGTGGGCCAAGAACATACCCTTCT
TCCCGGAGCTGCAGGTGACCGACCAGGTGGCCCTGCTCCGGCTCGTCTGG
TCAGAGCTCTTCGTCCTAAACGCCAGCCAGTGCTCCATGCCGCTCCATGT
GGCGCCACTGCTGGCCGCCGCCGGACTTCATGCCTCCCCGATGGCCGCCG
ATCGTGTGGTGGCCTTCATGGACCACATCCGCATCTTCCAGGAGCAGGTG
GAGAAGCTGAAGGCGCTGCATGTCGACTCCGCGGAGTACTCCTGCCTCAA
GGCGATCGTGCTCTTCACCACCGATGCCTGCGGCCTGTCCGATGTGACGC
ACATTGAATCCCTGCAAGAGAAGTCGCAGTGCGCCCTCGAGGAATACTGC
CGGACCCAGTATCCCAACCAGCCCACGAGATTCGGCAAGCTGCTTCTCAG
ACTGCCATCGCTGCGAACGGTCTCCTCACAAGTCATTGAGCAATTGTTTT
TTGTGCGTCTAGTCGGAAAAACGCCAATTGAAACGCTGATACGCGATATG
CTGCTGAGCGGCAACAGTTTCTCCTGGCCCTATCTGCCTTCGATGTGAAA
GCTTTCTAGACCAT

BS11502.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:06:31
Subject Length Description Subject Range Query Range Score Percent Strand
svp-RE 1665 CG11502-PE 1..1632 17..1648 8145 99.9 Plus
svp-RB 1632 CG11502-PB 1..1632 17..1648 8145 99.9 Plus
svp-RA 2241 CG11502-PA 1..1357 17..1373 6770 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:06:33
Subject Length Description Subject Range Query Range Score Percent Strand
svp-RE 3859 CG11502-RE 443..2075 16..1648 8150 99.9 Plus
svp-RB 3859 CG11502-RB 443..2075 16..1648 8150 99.9 Plus
svp-RA 3421 CG11502-RA 485..1842 16..1373 6775 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12281594..12282251 16..673 3275 99.8 Plus
3R 32079331 3R 12294006..12294559 820..1373 2770 100 Plus
3R 32079331 3R 12300478..12300638 1373..1533 805 100 Plus
3R 32079331 3R 12290207..12290358 670..821 760 100 Plus
3R 32079331 3R 12300885..12301001 1532..1648 585 100 Plus
Blast to na_te.dros performed on 2014-11-28 05:06:30 has no hits.

BS11502.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:14 Download gff for BS11502.complete
Subject Subject Range Query Range Percent Splice Strand
svp-RB 1..1632 17..1648 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:40:59 Download gff for BS11502.complete
Subject Subject Range Query Range Percent Splice Strand
svp-RB 444..2074 17..1647 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:14 Download gff for BS11502.complete
Subject Subject Range Query Range Percent Splice Strand
svp-RB 444..2074 17..1647 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:14 Download gff for BS11502.complete
Subject Subject Range Query Range Percent Splice Strand
svp-RB 440..2075 13..1648 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:04:21 Download gff for BS11502.complete
Subject Subject Range Query Range Percent Splice Strand
svp-RB 444..2074 17..1647 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:04:21 Download gff for BS11502.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12290209..12290358 672..821 100 -> Plus
3R 12281595..12282249 17..671 99 -> Plus
3R 12294008..12294559 822..1373 100 -> Plus
3R 12300479..12300636 1374..1531 100 -> Plus
3R 12300885..12301000 1532..1647 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:14 Download gff for BS11502.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8107317..8107971 17..671 99 -> Plus
arm_3R 8115931..8116080 672..821 100 -> Plus
arm_3R 8119730..8120281 822..1373 100 -> Plus
arm_3R 8126201..8126358 1374..1531 100 -> Plus
arm_3R 8126607..8126722 1532..1647 100   Plus

BS11502.pep Sequence

Translation from 16 to 1647

> BS11502.pep
MCASPSTAPGFFNPRPQSGAELSAFDIGLSRSMGLGVPPHSAWHEPPASL
GGHLHAASAGPGTTTGSVATGGGGTTPSSVASQQSAVIKQDLSCPSLNQA
GSGHHPGIKEDLSSSLPSANGGSAGGHHSGSGSGSGSGVNPGHGSDMLPL
IKGHGQDMLTSIKGQPTGCGSTTPSSQANSSHSQSSNSGSQIDSKQNIEC
VVYGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRNCPIDQHHRN
QCQYCRLKKCLKMGMRREAVQRGRVPPTQPGLAGMHGQYQIANGDPMGIA
GFNGHSYLSSYISLLLRAEPYPTSRYGQCMQPNNIMGIDNICELAARLLF
SAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA
AAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLF
TTDACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLR
TVSSQVIEQLFFVRLVGKTPIETLIRDMLLSGNSFSWPYLPSM*

BS11502.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:25
Subject Length Description Subject Range Query Range Score Percent Strand
svp-PE 554 CG11502-PE 1..543 1..543 2865 99.8 Plus
svp-PB 543 CG11502-PB 1..543 1..543 2865 99.8 Plus
svp-PA 746 CG11502-PA 1..452 1..452 2393 99.8 Plus
svp-PC 281 CG11502-PC 1..281 263..543 1458 100 Plus
Hnf4-PB 732 CG9310-PB 28..498 72..532 585 32.9 Plus