Clone Sequence Records
BS11502.3prime Sequence
900 bp (876 high quality bases) assembled on 2006-05-08
> BS11502.3prime
ATGGTCTAGAAAGCTTTCACATCGAAGGCAGATAGGGCCAGGAGAAACTG
TTGCCGCTCAGCAGCATATCGCGTATCAGCGTTTCAATTGGCGTTTTTCC
GACTAGACGCACAAAAAACAATTGCTCAATGACTTGTGAGGAGACCGTTC
GCAGCGATGGCAGTCTGAGAAGCAGCTTGCCGAATCTCGTGGGCTGGTTG
GGATACTGGGTCCGGCAGTATTCCTCGAGGGCGCACTGCGACTTCTCTTG
CAGGGATTCAATGTGCGTCACATCGGACAGGCCGCAGGCATCGGTGGTGA
AGAGCACGATCGCCTTGAGGCAGGAGTACTCCGCGGAGTCGACATGCAGC
GCCTTCAGCTTCTCCACCTGCTCCTGGAAGATGCGGATGTGGTCCATGAA
GGCCACCACACGATCGGCGGCCATCGGGGAGGCATGAAGTCCGGCGGCGG
CCAGCAGTGGCGCCACATGGAGCGGCATGGAGCACTGGCTGGCGTTTAGG
ACGAAGAGCTCTGACCAGACGAGCCGGAGCAGGGCCACCTGGTCGGTCAC
CTGCAGCTCCGGGAAGAAGGGTATGTTCTTGGCCCACTCGACCGCCGAGA
AGAGCAGTCGGGCGGCCAGTTCGCAGATGTTGTCGATGCCCATAATGTTG
TTGGGTTGCATGCACTGGCCATATCGCGAAGTCGGATACGGTTCCGCCCG
CAGCAGGAGCGAGATGTAGGAACTGAGGTACGAGTGCCCGTTAAAGCCGG
CAATGCCCATGGGATCCCCGTTGGCAATCTGGTACTGCCCATGCATGCCG
GCCAGACCGGGCTGAGTGGGTGGTACGCGTCCACGTTGAACAGCTTCGCG
TCTCATGCCCATTTTGAGGCACTTCTTCAATCGACAATATTGACATTGAT
BS11502.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11502-PB | 1632 | svp-RB | 749..1632 | 900..17 | 4420 | 100 | Minus |
CG11502-PC | 846 | svp-RC | 1..846 | 862..17 | 4230 | 100 | Minus |
CG11502-PA | 2241 | svp-RA | 749..1357 | 900..292 | 3045 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:40:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
svp-RE | 3859 | CG11502-RE | 1192..2075 | 900..17 | 4420 | 100 | Minus |
svp-RB | 3859 | CG11502-RB | 1192..2075 | 900..17 | 4420 | 100 | Minus |
svp-RC | 2876 | CG11502-RC | 209..1092 | 900..17 | 4420 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:39:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12294006..12294559 | 845..292 | 2770 | 100 | Minus |
3R | 32079331 | 3R | 12300478..12300638 | 292..132 | 805 | 100 | Minus |
3R | 32079331 | 3R | 12300885..12301001 | 133..17 | 585 | 100 | Minus |
3R | 32079331 | 3R | 12290302..12290358 | 900..844 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:40:02 has no hits.
BS11502.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:11:06 Download gff for
BS11502.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-PB | 749..1632 | 17..900 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:42:26 Download gff for
BS11502.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11502-PB | 749..1632 | 17..900 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:51:29 Download gff for
BS11502.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-RC | 209..1092 | 17..900 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:00:44 Download gff for
BS11502.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-RC | 209..1092 | 17..900 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:00:44 Download gff for
BS11502.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12300885..12301001 | 17..133 | 100 | | Minus |
3R | 12300479..12300636 | 134..291 | 100 | -> | Minus |
3R | 12290302..12290358 | 844..900 | 100 | -> | Minus |
3R | 12294008..12294559 | 292..843 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:51:29 Download gff for
BS11502.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8116024..8116080 | 844..900 | 100 | -> | Minus |
arm_3R | 8119730..8120281 | 292..843 | 100 | -> | Minus |
arm_3R | 8126201..8126358 | 134..291 | 100 | -> | Minus |
arm_3R | 8126607..8126723 | 17..133 | 100 | | Minus |
BS11502.5prime Sequence
863 bp (796 high quality bases) assembled on 2006-05-08
> BS11502.5prime
GAAGTTATCAGTCGACATGTGCGCCTCCCCGTCCACGGCTCCCGGCTTCT
TCAATCCGCGCCCGCAATCCGGCGCGGAGCTGTCGGCCTTCGACATCGGC
CTGTCCCGCTCGATGGGGCTGGGCGTCCCGCCACACAGCGCCTGGCACGA
ACCGCCGGCCTCCCTCGGCGGTCACCTGCACGCCGCCTCCGCCGGACCGG
GCACCACCACCGGCAGCGTGGCGACGGGCGGCGGCGGTACCACTCCGAGC
AGCGTGGCCAGCCAGCAGTCGGCGGTGATCAAGCAGGATCTCTCTTGCCC
CAGCCTCAATCAGGCGGGATCCGGCCATCATCCTGGCATCAAGGAGGATC
TGTCCAGCAGCCTGCCCAGCGCCAATGGTGGATCCGCCGGTGGCCATCAC
TCCGGTTCCGGATCGGGTTCCGGTTCGGGCGTCAATCCCGGACACGGCTC
CGACATGCTGCCCCTGATCAAGGGCCATGGCCAGGACATGCTCACCAGCA
TCAAGGGACAGCCCACGGGCTGTGGCAGCACCACGCCCAGCTCCCAGGCG
AATAGCTCCCACTCGCAGAGCAGCAACAGTGGATCCCAGATCGACAGCAA
GCAGAACATCGAGTGCGTCGTCTACGGCGACAAGAGTTCCGGCAAGCACT
ACGGACAATTTACCTGCGAAGGTTGCAAATCTTTCTTCAAGCGCTCGGTG
CGACGTAATCTAACTTACTCTTGCCGCGGCAGCAGAAACTGTCCCATAGA
TCAACACCATCGCAATCAATGTCAATATTGTCGATTGAAGAAGTGCCTCA
AAATGGGCATGAGACGCGAAGCTGTTCAACGTGGACGCGTACCACCCACT
CAGCCCGGTCTGG
BS11502.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11502-PA | 2241 | svp-RA | 1..847 | 17..863 | 4210 | 99.8 | Plus |
CG11502-PB | 1632 | svp-RB | 1..847 | 17..863 | 4210 | 99.8 | Plus |
CG11502-PC | 846 | svp-RC | 1..61 | 803..863 | 305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:05:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
svp-RE | 3859 | CG11502-RE | 443..1290 | 16..863 | 4225 | 99.9 | Plus |
svp-RB | 3859 | CG11502-RB | 443..1290 | 16..863 | 4225 | 99.9 | Plus |
svp-RA | 3421 | CG11502-RA | 485..1332 | 16..863 | 4225 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:05:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12281594..12282251 | 16..673 | 3275 | 99.8 | Plus |
3R | 32079331 | 3R | 12290207..12290358 | 670..821 | 760 | 100 | Plus |
3R | 32079331 | 3R | 12294006..12294049 | 820..863 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:05:21 has no hits.
BS11502.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:11:07 Download gff for
BS11502.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-PA | 1..847 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:42:28 Download gff for
BS11502.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11502-PB | 1..847 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:51:39 Download gff for
BS11502.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-RA | 482..1332 | 13..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:03:37 Download gff for
BS11502.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-RA | 482..1332 | 13..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:03:37 Download gff for
BS11502.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12281591..12282249 | 13..671 | 99 | -> | Plus |
3R | 12290209..12290358 | 672..821 | 100 | -> | Plus |
3R | 12294008..12294049 | 822..863 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:51:39 Download gff for
BS11502.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8107313..8107971 | 13..671 | 99 | -> | Plus |
arm_3R | 8115931..8116080 | 672..821 | 100 | -> | Plus |
arm_3R | 8119730..8119771 | 822..863 | 100 | | Plus |
BS11502.complete Sequence
1664 bp assembled on 2006-11-01
GenBank Submission: FJ636890
> BS11502.complete
GAAGTTATCAGTCGACATGTGCGCCTCCCCGTCCACGGCTCCCGGCTTCT
TCAATCCGCGCCCGCAATCCGGCGCGGAGCTGTCGGCCTTCGACATCGGC
CTGTCCCGCTCGATGGGGCTGGGCGTCCCGCCACACAGCGCCTGGCACGA
ACCGCCGGCCTCCCTCGGCGGTCACCTGCACGCCGCCTCCGCCGGACCGG
GCACCACCACCGGCAGCGTGGCGACGGGCGGCGGCGGTACCACTCCGAGC
AGCGTGGCCAGCCAGCAGTCGGCGGTGATCAAGCAGGATCTCTCTTGCCC
CAGCCTCAATCAGGCGGGATCCGGCCATCATCCTGGCATCAAGGAGGATC
TGTCCAGCAGCCTGCCCAGCGCCAATGGTGGATCCGCCGGTGGCCATCAC
TCCGGTTCCGGATCGGGTTCCGGTTCGGGCGTCAATCCCGGACACGGCTC
CGACATGCTGCCCCTGATCAAGGGCCATGGCCAGGACATGCTCACCAGCA
TCAAGGGACAGCCCACGGGCTGTGGCAGCACCACGCCCAGCTCCCAGGCG
AATAGCTCCCACTCGCAGAGCAGCAACAGTGGATCCCAGATCGACAGCAA
GCAGAACATCGAGTGCGTCGTCTACGGCGACAAGAGTTCCGGCAAGCACT
ACGGACAATTTACCTGCGAAGGTTGCAAATCTTTCTTCAAGCGCTCGGTG
CGACGTAATCTAACTTACTCTTGCCGCGGCAGCAGAAACTGTCCCATAGA
TCAACACCATCGCAATCAATGTCAATATTGTCGATTGAAGAAGTGCCTCA
AAATGGGCATGAGACGCGAAGCTGTTCAACGTGGACGCGTACCACCCACT
CAGCCCGGTCTGGCCGGCATGCATGGGCAGTACCAGATTGCCAACGGGGA
TCCCATGGGCATTGCCGGCTTTAACGGGCACTCGTACCTCAGTTCCTACA
TCTCGCTCCTGCTGCGGGCGGAACCGTATCCGACTTCGCGATATGGCCAG
TGCATGCAACCCAACAACATTATGGGCATCGACAACATCTGCGAACTGGC
CGCCCGACTGCTCTTCTCGGCGGTCGAGTGGGCCAAGAACATACCCTTCT
TCCCGGAGCTGCAGGTGACCGACCAGGTGGCCCTGCTCCGGCTCGTCTGG
TCAGAGCTCTTCGTCCTAAACGCCAGCCAGTGCTCCATGCCGCTCCATGT
GGCGCCACTGCTGGCCGCCGCCGGACTTCATGCCTCCCCGATGGCCGCCG
ATCGTGTGGTGGCCTTCATGGACCACATCCGCATCTTCCAGGAGCAGGTG
GAGAAGCTGAAGGCGCTGCATGTCGACTCCGCGGAGTACTCCTGCCTCAA
GGCGATCGTGCTCTTCACCACCGATGCCTGCGGCCTGTCCGATGTGACGC
ACATTGAATCCCTGCAAGAGAAGTCGCAGTGCGCCCTCGAGGAATACTGC
CGGACCCAGTATCCCAACCAGCCCACGAGATTCGGCAAGCTGCTTCTCAG
ACTGCCATCGCTGCGAACGGTCTCCTCACAAGTCATTGAGCAATTGTTTT
TTGTGCGTCTAGTCGGAAAAACGCCAATTGAAACGCTGATACGCGATATG
CTGCTGAGCGGCAACAGTTTCTCCTGGCCCTATCTGCCTTCGATGTGAAA
GCTTTCTAGACCAT
BS11502.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:06:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
svp-RE | 1665 | CG11502-PE | 1..1632 | 17..1648 | 8145 | 99.9 | Plus |
svp-RB | 1632 | CG11502-PB | 1..1632 | 17..1648 | 8145 | 99.9 | Plus |
svp-RA | 2241 | CG11502-PA | 1..1357 | 17..1373 | 6770 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:06:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
svp-RE | 3859 | CG11502-RE | 443..2075 | 16..1648 | 8150 | 99.9 | Plus |
svp-RB | 3859 | CG11502-RB | 443..2075 | 16..1648 | 8150 | 99.9 | Plus |
svp-RA | 3421 | CG11502-RA | 485..1842 | 16..1373 | 6775 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:06:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12281594..12282251 | 16..673 | 3275 | 99.8 | Plus |
3R | 32079331 | 3R | 12294006..12294559 | 820..1373 | 2770 | 100 | Plus |
3R | 32079331 | 3R | 12300478..12300638 | 1373..1533 | 805 | 100 | Plus |
3R | 32079331 | 3R | 12290207..12290358 | 670..821 | 760 | 100 | Plus |
3R | 32079331 | 3R | 12300885..12301001 | 1532..1648 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:06:30 has no hits.
BS11502.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:14 Download gff for
BS11502.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-RB | 1..1632 | 17..1648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:40:59 Download gff for
BS11502.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-RB | 444..2074 | 17..1647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:14 Download gff for
BS11502.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-RB | 444..2074 | 17..1647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:14 Download gff for
BS11502.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-RB | 440..2075 | 13..1648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:04:21 Download gff for
BS11502.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-RB | 444..2074 | 17..1647 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:04:21 Download gff for
BS11502.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12290209..12290358 | 672..821 | 100 | -> | Plus |
3R | 12281595..12282249 | 17..671 | 99 | -> | Plus |
3R | 12294008..12294559 | 822..1373 | 100 | -> | Plus |
3R | 12300479..12300636 | 1374..1531 | 100 | -> | Plus |
3R | 12300885..12301000 | 1532..1647 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:14 Download gff for
BS11502.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8107317..8107971 | 17..671 | 99 | -> | Plus |
arm_3R | 8115931..8116080 | 672..821 | 100 | -> | Plus |
arm_3R | 8119730..8120281 | 822..1373 | 100 | -> | Plus |
arm_3R | 8126201..8126358 | 1374..1531 | 100 | -> | Plus |
arm_3R | 8126607..8126722 | 1532..1647 | 100 | | Plus |
BS11502.pep Sequence
Translation from 16 to 1647
> BS11502.pep
MCASPSTAPGFFNPRPQSGAELSAFDIGLSRSMGLGVPPHSAWHEPPASL
GGHLHAASAGPGTTTGSVATGGGGTTPSSVASQQSAVIKQDLSCPSLNQA
GSGHHPGIKEDLSSSLPSANGGSAGGHHSGSGSGSGSGVNPGHGSDMLPL
IKGHGQDMLTSIKGQPTGCGSTTPSSQANSSHSQSSNSGSQIDSKQNIEC
VVYGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRNCPIDQHHRN
QCQYCRLKKCLKMGMRREAVQRGRVPPTQPGLAGMHGQYQIANGDPMGIA
GFNGHSYLSSYISLLLRAEPYPTSRYGQCMQPNNIMGIDNICELAARLLF
SAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA
AAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLF
TTDACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLR
TVSSQVIEQLFFVRLVGKTPIETLIRDMLLSGNSFSWPYLPSM*
BS11502.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
svp-PE | 554 | CG11502-PE | 1..543 | 1..543 | 2865 | 99.8 | Plus |
svp-PB | 543 | CG11502-PB | 1..543 | 1..543 | 2865 | 99.8 | Plus |
svp-PA | 746 | CG11502-PA | 1..452 | 1..452 | 2393 | 99.8 | Plus |
svp-PC | 281 | CG11502-PC | 1..281 | 263..543 | 1458 | 100 | Plus |
Hnf4-PB | 732 | CG9310-PB | 28..498 | 72..532 | 585 | 32.9 | Plus |