Clone BS11506 Report

Search the DGRC for BS11506

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:115
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptMkp3-RA
Protein status:BS11506.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11506.3prime Sequence

756 bp (755 high quality bases) assembled on 2006-05-08

> BS11506.3prime
ATGGTCTAGAAAGCTTTCATTTAAGACCCGTGTCCGACGGGGTCCAGCGA
TCGAACTCGATGCCGGAGTCTGGCGAGACCCCGGTAGCATTCGCCAGATG
GGTGGCCATAAAGCCCGTGGTCTGCATGCAATTGCAGTCCGGCGCAATGC
AGCTGCACGAGAACCTGGAGCCGGGTCTCAGGCGCAGTTGGCTCTCGAAG
GACAGCAGCTGCTGCATGAAGTGGAAGTTGGGCGATACATCCGGCTTCCG
GTCCCGCACCATCGCGAAGGCGTCGTTGAGACTCAGGCCCCGCGTGTGCA
TCAAGTAGGCGAGCGTCACGGTCACCGAGCGCGAAACTCCGGCCAGGCAG
TGGACCAGCACCACCGAGCTTGCGGACCGCGCTTCCTCTATAAACTGTAT
GGCATCCGGGAAATGTATGGCCAAATCTTGTGAGTAGTGATCCGTGATCG
GAATCTGCAGATACTTGATGTCGCCCGACTCCTTGAACTTATTTGGCAAA
TCTGGTGTCACATTCAAAACATACTTTATATTGTACTTTTTCAACGCTTC
CGAGTCGCAGCTGTGTGTGGCATTTCCCAGGAAGAGTAGTCCAGGGATTA
TCTCCACGGGCGCCTCGTTGTAGTTGTGGTGACTGTGGTGGTGGTGATGG
TGGCTGGAGCTCTCGCAATCCGACGATTCCGCCGAACTGCTGCACGCGGA
ATCGGATTGCGTTGTGGAAATGCGCAGGGACCTAAGACCCATGTCGACTG
ATAACT

BS11506.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG14080-PB 1236 Mkp3-RB 511..1236 742..17 3630 100 Minus
CG14080-PA 726 Mkp3-RA 1..726 742..17 3630 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:44:03
Subject Length Description Subject Range Query Range Score Percent Strand
Mkp3-RD 4696 CG14080-RD 1214..1939 742..17 3630 100 Minus
Mkp3-RC 3119 CG14080-RC 1214..1939 742..17 3630 100 Minus
Mkp3-RA 2053 CG14080-RA 148..873 742..17 3630 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:43:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19068912..19069284 17..389 1865 100 Plus
3L 28110227 3L 19069682..19069891 524..733 1050 100 Plus
3L 28110227 3L 19069487..19069624 388..525 690 100 Plus
Blast to na_te.dros performed 2015-02-12 04:44:01
Subject Length Description Subject Range Query Range Score Percent Strand
I-element 5371 I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). 1236..1272 653..618 110 81.1 Minus

BS11506.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:11:15 Download gff for BS11506.3prime
Subject Subject Range Query Range Percent Splice Strand
Mkp3-PA 1..726 17..742 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:42:39 Download gff for BS11506.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14080-PA 1..726 17..742 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:50:16 Download gff for BS11506.3prime
Subject Subject Range Query Range Percent Splice Strand
Mkp3-RA 140..873 17..752 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:02:39 Download gff for BS11506.3prime
Subject Subject Range Query Range Percent Splice Strand
Mkp3-RA 140..873 17..752 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:02:39 Download gff for BS11506.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19069682..19069891 524..733 100   Plus
3L 19068912..19069282 17..387 100 <- Plus
3L 19069487..19069622 388..523 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:50:16 Download gff for BS11506.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19062012..19062382 17..387 100 <- Plus
arm_3L 19062587..19062722 388..523 100 <- Plus
arm_3L 19062782..19062991 524..733 100   Plus

BS11506.5prime Sequence

756 bp (755 high quality bases) assembled on 2006-05-08

> BS11506.5prime
GAAGTTATCAGTCGACATGGGTCTTAGGTCCCTGCGCATTTCCACAACGC
AATCCGATTCCGCGTGCAGCAGTTCGGCGGAATCGTCGGATTGCGAGAGC
TCCAGCCACCATCACCACCACCACAGTCACCACAACTACAACGAGGCGCC
CGTGGAGATAATCCCTGGACTACTCTTCCTGGGAAATGCCACACACAGCT
GCGACTCGGAAGCGTTGAAAAAGTACAATATAAAGTATGTTTTGAATGTG
ACACCAGATTTGCCAAATAAGTTCAAGGAGTCGGGCGACATCAAGTATCT
GCAGATTCCGATCACGGATCACTACTCACAAGATTTGGCCATACATTTCC
CGGATGCCATACAGTTTATAGAGGAAGCGCGGTCCGCAAGCTCGGTGGTG
CTGGTCCACTGCCTGGCCGGAGTTTCGCGCTCGGTGACCGTGACGCTCGC
CTACTTGATGCACACGCGGGGCCTGAGTCTCAACGACGCCTTCGCGATGG
TGCGGGACCGGAAGCCGGATGTATCGCCCAACTTCCACTTCATGCAGCAG
CTGCTGTCCTTCGAGAGCCAACTGCGCCTGAGACCCGGCTCCAGGTTCTC
GTGCAGCTGCATTGCGCCGGACTGCAATTGCATGCAGACCACGGGCTTTA
TGGCCACCCATCTGGCGAATGCTACCGGGGTCTCGCCAGACTCCGGCATC
GAGTTCGATCGCTGGACCCCGTCGGACACGGGTCTTAAATGAAAGCTTTC
TAGACC

BS11506.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG14080-PB 1236 Mkp3-RB 511..1236 17..742 3630 100 Plus
CG14080-PA 726 Mkp3-RA 1..726 17..742 3630 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:12:49
Subject Length Description Subject Range Query Range Score Percent Strand
Mkp3-RD 4696 CG14080-RD 1214..1939 17..742 3630 100 Plus
Mkp3-RC 3119 CG14080-RC 1214..1939 17..742 3630 100 Plus
Mkp3-RA 2053 CG14080-RA 148..873 17..742 3630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:12:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19068912..19069284 742..370 1865 100 Minus
3L 28110227 3L 19069682..19069891 235..26 1050 100 Minus
3L 28110227 3L 19069487..19069624 371..234 690 100 Minus
Blast to na_te.dros performed 2015-02-12 11:12:47
Subject Length Description Subject Range Query Range Score Percent Strand
I-element 5371 I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). 1236..1272 106..141 110 81.1 Plus

BS11506.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:11:16 Download gff for BS11506.5prime
Subject Subject Range Query Range Percent Splice Strand
Mkp3-PA 1..726 17..742 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:42:41 Download gff for BS11506.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14080-PA 1..726 17..742 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:20:17 Download gff for BS11506.5prime
Subject Subject Range Query Range Percent Splice Strand
Mkp3-RA 140..873 7..742 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:26:46 Download gff for BS11506.5prime
Subject Subject Range Query Range Percent Splice Strand
Mkp3-RA 140..873 7..742 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:26:46 Download gff for BS11506.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19068912..19069282 372..742 100 <- Minus
3L 19069487..19069622 236..371 100 <- Minus
3L 19069682..19069891 26..235 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:20:17 Download gff for BS11506.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19062012..19062382 372..742 100 <- Minus
arm_3L 19062587..19062722 236..371 100 <- Minus
arm_3L 19062782..19062991 26..235 100   Minus

BS11506.complete Sequence

758 bp assembled on 2006-11-01

GenBank Submission: FJ636891

> BS11506.complete
GAAGTTATCAGTCGACATGGGTCTTAGGTCCCTGCGCATTTCCACAACGC
AATCCGATTCCGCGTGCAGCAGTTCGGCGGAATCGTCGGATTGCGAGAGC
TCCAGCCACCATCACCACCACCACAGTCACCACAACTACAACGAGGCGCC
CGTGGAGATAATCCCTGGACTACTCTTCCTGGGAAATGCCACACACAGCT
GCGACTCGGAAGCGTTGAAAAAGTACAATATAAAGTATGTTTTGAATGTG
ACACCAGATTTGCCAAATAAGTTCAAGGAGTCGGGCGACATCAAGTATCT
GCAGATTCCGATCACGGATCACTACTCACAAGATTTGGCCATACATTTCC
CGGATGCCATACAGTTTATAGAGGAAGCGCGGTCCGCAAGCTCGGTGGTG
CTGGTCCACTGCCTGGCCGGAGTTTCGCGCTCGGTGACCGTGACGCTCGC
CTACTTGATGCACACGCGGGGCCTGAGTCTCAACGACGCCTTCGCGATGG
TGCGGGACCGGAAGCCGGATGTATCGCCCAACTTCCACTTCATGCAGCAG
CTGCTGTCCTTCGAGAGCCAACTGCGCCTGAGACCCGGCTCCAGGTTCTC
GTGCAGCTGCATTGCGCCGGACTGCAATTGCATGCAGACCACGGGCTTTA
TGGCCACCCATCTGGCGAATGCTACCGGGGTCTCGCCAGACTCCGGCATC
GAGTTCGATCGCTGGACCCCGTCGGACACGGGTCTTAAATGAAAGCTTTC
TAGACCAT

BS11506.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:26:49
Subject Length Description Subject Range Query Range Score Percent Strand
Mkp3-RD 1236 CG14080-PD 511..1236 17..742 3630 100 Plus
Mkp3-RC 1494 CG14080-PC 511..1236 17..742 3630 100 Plus
Mkp3-RA 726 CG14080-PA 1..726 17..742 3630 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:26:51
Subject Length Description Subject Range Query Range Score Percent Strand
Mkp3-RD 4696 CG14080-RD 1214..1939 17..742 3630 100 Plus
Mkp3-RC 3119 CG14080-RC 1214..1939 17..742 3630 100 Plus
Mkp3-RA 2053 CG14080-RA 148..873 17..742 3630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:26:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19068912..19069284 742..370 1865 100 Minus
3L 28110227 3L 19069682..19069891 235..26 1050 100 Minus
3L 28110227 3L 19069487..19069624 371..234 690 100 Minus
Blast to na_te.dros performed 2014-11-28 00:26:48
Subject Length Description Subject Range Query Range Score Percent Strand
I-element 5371 I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). 1236..1272 106..141 110 81.1 Plus

BS11506.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:15 Download gff for BS11506.complete
Subject Subject Range Query Range Percent Splice Strand
Mkp3-RA 1..726 17..742 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:18 Download gff for BS11506.complete
Subject Subject Range Query Range Percent Splice Strand
Mkp3-RA 140..873 7..742 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:52:18 Download gff for BS11506.complete
Subject Subject Range Query Range Percent Splice Strand
Mkp3-RA 148..872 17..741 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:15 Download gff for BS11506.complete
Subject Subject Range Query Range Percent Splice Strand
Mkp3-RA 140..873 7..742 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:35 Download gff for BS11506.complete
Subject Subject Range Query Range Percent Splice Strand
Mkp3-RA 148..872 17..741 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:35 Download gff for BS11506.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19068913..19069282 372..741 100 <- Minus
3L 19069487..19069622 236..371 100 <- Minus
3L 19069682..19069891 26..235 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:52:18 Download gff for BS11506.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19062013..19062382 372..741 100 <- Minus
arm_3L 19062587..19062722 236..371 100 <- Minus
arm_3L 19062782..19062991 26..235 100   Minus

BS11506.pep Sequence

Translation from 16 to 741

> BS11506.pep
MGLRSLRISTTQSDSACSSSAESSDCESSSHHHHHHSHHNYNEAPVEIIP
GLLFLGNATHSCDSEALKKYNIKYVLNVTPDLPNKFKESGDIKYLQIPIT
DHYSQDLAIHFPDAIQFIEEARSASSVVLVHCLAGVSRSVTVTLAYLMHT
RGLSLNDAFAMVRDRKPDVSPNFHFMQQLLSFESQLRLRPGSRFSCSCIA
PDCNCMQTTGFMATHLANATGVSPDSGIEFDRWTPSDTGLK*

BS11506.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:22
Subject Length Description Subject Range Query Range Score Percent Strand
Mkp3-PA 241 CG14080-PA 1..241 1..241 1276 100 Plus
Mkp3-PD 411 CG14080-PD 171..411 1..241 1276 100 Plus
Mkp3-PB 411 CG14080-PB 171..411 1..241 1276 100 Plus
Mkp3-PC 497 CG14080-PC 171..411 1..241 1276 100 Plus
puc-PA 476 CG7850-PA 100..271 9..187 267 38 Plus