Clone Sequence Records
BS11506.3prime Sequence
756 bp (755 high quality bases) assembled on 2006-05-08
> BS11506.3prime
ATGGTCTAGAAAGCTTTCATTTAAGACCCGTGTCCGACGGGGTCCAGCGA
TCGAACTCGATGCCGGAGTCTGGCGAGACCCCGGTAGCATTCGCCAGATG
GGTGGCCATAAAGCCCGTGGTCTGCATGCAATTGCAGTCCGGCGCAATGC
AGCTGCACGAGAACCTGGAGCCGGGTCTCAGGCGCAGTTGGCTCTCGAAG
GACAGCAGCTGCTGCATGAAGTGGAAGTTGGGCGATACATCCGGCTTCCG
GTCCCGCACCATCGCGAAGGCGTCGTTGAGACTCAGGCCCCGCGTGTGCA
TCAAGTAGGCGAGCGTCACGGTCACCGAGCGCGAAACTCCGGCCAGGCAG
TGGACCAGCACCACCGAGCTTGCGGACCGCGCTTCCTCTATAAACTGTAT
GGCATCCGGGAAATGTATGGCCAAATCTTGTGAGTAGTGATCCGTGATCG
GAATCTGCAGATACTTGATGTCGCCCGACTCCTTGAACTTATTTGGCAAA
TCTGGTGTCACATTCAAAACATACTTTATATTGTACTTTTTCAACGCTTC
CGAGTCGCAGCTGTGTGTGGCATTTCCCAGGAAGAGTAGTCCAGGGATTA
TCTCCACGGGCGCCTCGTTGTAGTTGTGGTGACTGTGGTGGTGGTGATGG
TGGCTGGAGCTCTCGCAATCCGACGATTCCGCCGAACTGCTGCACGCGGA
ATCGGATTGCGTTGTGGAAATGCGCAGGGACCTAAGACCCATGTCGACTG
ATAACT
BS11506.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14080-PB | 1236 | Mkp3-RB | 511..1236 | 742..17 | 3630 | 100 | Minus |
CG14080-PA | 726 | Mkp3-RA | 1..726 | 742..17 | 3630 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:44:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mkp3-RD | 4696 | CG14080-RD | 1214..1939 | 742..17 | 3630 | 100 | Minus |
Mkp3-RC | 3119 | CG14080-RC | 1214..1939 | 742..17 | 3630 | 100 | Minus |
Mkp3-RA | 2053 | CG14080-RA | 148..873 | 742..17 | 3630 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:43:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19068912..19069284 | 17..389 | 1865 | 100 | Plus |
3L | 28110227 | 3L | 19069682..19069891 | 524..733 | 1050 | 100 | Plus |
3L | 28110227 | 3L | 19069487..19069624 | 388..525 | 690 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 04:44:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 1236..1272 | 653..618 | 110 | 81.1 | Minus |
BS11506.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:11:15 Download gff for
BS11506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mkp3-PA | 1..726 | 17..742 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:42:39 Download gff for
BS11506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14080-PA | 1..726 | 17..742 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:50:16 Download gff for
BS11506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mkp3-RA | 140..873 | 17..752 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:02:39 Download gff for
BS11506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mkp3-RA | 140..873 | 17..752 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:02:39 Download gff for
BS11506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19069682..19069891 | 524..733 | 100 | | Plus |
3L | 19068912..19069282 | 17..387 | 100 | <- | Plus |
3L | 19069487..19069622 | 388..523 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:50:16 Download gff for
BS11506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19062012..19062382 | 17..387 | 100 | <- | Plus |
arm_3L | 19062587..19062722 | 388..523 | 100 | <- | Plus |
arm_3L | 19062782..19062991 | 524..733 | 100 | | Plus |
BS11506.5prime Sequence
756 bp (755 high quality bases) assembled on 2006-05-08
> BS11506.5prime
GAAGTTATCAGTCGACATGGGTCTTAGGTCCCTGCGCATTTCCACAACGC
AATCCGATTCCGCGTGCAGCAGTTCGGCGGAATCGTCGGATTGCGAGAGC
TCCAGCCACCATCACCACCACCACAGTCACCACAACTACAACGAGGCGCC
CGTGGAGATAATCCCTGGACTACTCTTCCTGGGAAATGCCACACACAGCT
GCGACTCGGAAGCGTTGAAAAAGTACAATATAAAGTATGTTTTGAATGTG
ACACCAGATTTGCCAAATAAGTTCAAGGAGTCGGGCGACATCAAGTATCT
GCAGATTCCGATCACGGATCACTACTCACAAGATTTGGCCATACATTTCC
CGGATGCCATACAGTTTATAGAGGAAGCGCGGTCCGCAAGCTCGGTGGTG
CTGGTCCACTGCCTGGCCGGAGTTTCGCGCTCGGTGACCGTGACGCTCGC
CTACTTGATGCACACGCGGGGCCTGAGTCTCAACGACGCCTTCGCGATGG
TGCGGGACCGGAAGCCGGATGTATCGCCCAACTTCCACTTCATGCAGCAG
CTGCTGTCCTTCGAGAGCCAACTGCGCCTGAGACCCGGCTCCAGGTTCTC
GTGCAGCTGCATTGCGCCGGACTGCAATTGCATGCAGACCACGGGCTTTA
TGGCCACCCATCTGGCGAATGCTACCGGGGTCTCGCCAGACTCCGGCATC
GAGTTCGATCGCTGGACCCCGTCGGACACGGGTCTTAAATGAAAGCTTTC
TAGACC
BS11506.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14080-PB | 1236 | Mkp3-RB | 511..1236 | 17..742 | 3630 | 100 | Plus |
CG14080-PA | 726 | Mkp3-RA | 1..726 | 17..742 | 3630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:12:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mkp3-RD | 4696 | CG14080-RD | 1214..1939 | 17..742 | 3630 | 100 | Plus |
Mkp3-RC | 3119 | CG14080-RC | 1214..1939 | 17..742 | 3630 | 100 | Plus |
Mkp3-RA | 2053 | CG14080-RA | 148..873 | 17..742 | 3630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:12:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19068912..19069284 | 742..370 | 1865 | 100 | Minus |
3L | 28110227 | 3L | 19069682..19069891 | 235..26 | 1050 | 100 | Minus |
3L | 28110227 | 3L | 19069487..19069624 | 371..234 | 690 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 11:12:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 1236..1272 | 106..141 | 110 | 81.1 | Plus |
BS11506.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:11:16 Download gff for
BS11506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mkp3-PA | 1..726 | 17..742 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:42:41 Download gff for
BS11506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14080-PA | 1..726 | 17..742 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:20:17 Download gff for
BS11506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mkp3-RA | 140..873 | 7..742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:26:46 Download gff for
BS11506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mkp3-RA | 140..873 | 7..742 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:26:46 Download gff for
BS11506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19068912..19069282 | 372..742 | 100 | <- | Minus |
3L | 19069487..19069622 | 236..371 | 100 | <- | Minus |
3L | 19069682..19069891 | 26..235 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:20:17 Download gff for
BS11506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19062012..19062382 | 372..742 | 100 | <- | Minus |
arm_3L | 19062587..19062722 | 236..371 | 100 | <- | Minus |
arm_3L | 19062782..19062991 | 26..235 | 100 | | Minus |
BS11506.complete Sequence
758 bp assembled on 2006-11-01
GenBank Submission: FJ636891
> BS11506.complete
GAAGTTATCAGTCGACATGGGTCTTAGGTCCCTGCGCATTTCCACAACGC
AATCCGATTCCGCGTGCAGCAGTTCGGCGGAATCGTCGGATTGCGAGAGC
TCCAGCCACCATCACCACCACCACAGTCACCACAACTACAACGAGGCGCC
CGTGGAGATAATCCCTGGACTACTCTTCCTGGGAAATGCCACACACAGCT
GCGACTCGGAAGCGTTGAAAAAGTACAATATAAAGTATGTTTTGAATGTG
ACACCAGATTTGCCAAATAAGTTCAAGGAGTCGGGCGACATCAAGTATCT
GCAGATTCCGATCACGGATCACTACTCACAAGATTTGGCCATACATTTCC
CGGATGCCATACAGTTTATAGAGGAAGCGCGGTCCGCAAGCTCGGTGGTG
CTGGTCCACTGCCTGGCCGGAGTTTCGCGCTCGGTGACCGTGACGCTCGC
CTACTTGATGCACACGCGGGGCCTGAGTCTCAACGACGCCTTCGCGATGG
TGCGGGACCGGAAGCCGGATGTATCGCCCAACTTCCACTTCATGCAGCAG
CTGCTGTCCTTCGAGAGCCAACTGCGCCTGAGACCCGGCTCCAGGTTCTC
GTGCAGCTGCATTGCGCCGGACTGCAATTGCATGCAGACCACGGGCTTTA
TGGCCACCCATCTGGCGAATGCTACCGGGGTCTCGCCAGACTCCGGCATC
GAGTTCGATCGCTGGACCCCGTCGGACACGGGTCTTAAATGAAAGCTTTC
TAGACCAT
BS11506.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:26:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mkp3-RD | 1236 | CG14080-PD | 511..1236 | 17..742 | 3630 | 100 | Plus |
Mkp3-RC | 1494 | CG14080-PC | 511..1236 | 17..742 | 3630 | 100 | Plus |
Mkp3-RA | 726 | CG14080-PA | 1..726 | 17..742 | 3630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:26:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mkp3-RD | 4696 | CG14080-RD | 1214..1939 | 17..742 | 3630 | 100 | Plus |
Mkp3-RC | 3119 | CG14080-RC | 1214..1939 | 17..742 | 3630 | 100 | Plus |
Mkp3-RA | 2053 | CG14080-RA | 148..873 | 17..742 | 3630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:26:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19068912..19069284 | 742..370 | 1865 | 100 | Minus |
3L | 28110227 | 3L | 19069682..19069891 | 235..26 | 1050 | 100 | Minus |
3L | 28110227 | 3L | 19069487..19069624 | 371..234 | 690 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:26:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 1236..1272 | 106..141 | 110 | 81.1 | Plus |
BS11506.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:15 Download gff for
BS11506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mkp3-RA | 1..726 | 17..742 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:18 Download gff for
BS11506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mkp3-RA | 140..873 | 7..742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:52:18 Download gff for
BS11506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mkp3-RA | 148..872 | 17..741 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:15 Download gff for
BS11506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mkp3-RA | 140..873 | 7..742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:35 Download gff for
BS11506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mkp3-RA | 148..872 | 17..741 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:35 Download gff for
BS11506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19068913..19069282 | 372..741 | 100 | <- | Minus |
3L | 19069487..19069622 | 236..371 | 100 | <- | Minus |
3L | 19069682..19069891 | 26..235 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:52:18 Download gff for
BS11506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19062013..19062382 | 372..741 | 100 | <- | Minus |
arm_3L | 19062587..19062722 | 236..371 | 100 | <- | Minus |
arm_3L | 19062782..19062991 | 26..235 | 100 | | Minus |
BS11506.pep Sequence
Translation from 16 to 741
> BS11506.pep
MGLRSLRISTTQSDSACSSSAESSDCESSSHHHHHHSHHNYNEAPVEIIP
GLLFLGNATHSCDSEALKKYNIKYVLNVTPDLPNKFKESGDIKYLQIPIT
DHYSQDLAIHFPDAIQFIEEARSASSVVLVHCLAGVSRSVTVTLAYLMHT
RGLSLNDAFAMVRDRKPDVSPNFHFMQQLLSFESQLRLRPGSRFSCSCIA
PDCNCMQTTGFMATHLANATGVSPDSGIEFDRWTPSDTGLK*
BS11506.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mkp3-PA | 241 | CG14080-PA | 1..241 | 1..241 | 1276 | 100 | Plus |
Mkp3-PD | 411 | CG14080-PD | 171..411 | 1..241 | 1276 | 100 | Plus |
Mkp3-PB | 411 | CG14080-PB | 171..411 | 1..241 | 1276 | 100 | Plus |
Mkp3-PC | 497 | CG14080-PC | 171..411 | 1..241 | 1276 | 100 | Plus |
puc-PA | 476 | CG7850-PA | 100..271 | 9..187 | 267 | 38 | Plus |