Clone Sequence Records
BS11507.3prime Sequence
828 bp (827 high quality bases) assembled on 2006-05-08
> BS11507.3prime
ATGGTCTAGAAAGCTTCTAGGCCAAGATGATCTGGCTCTTCTTGATCCAG
TCAACATACTGGCTGACCTTGCAGTAAACACCCGGATAGGGTGCCACGGT
GCAGGGCTTGATGCTCCACGACACGATGCCCACCTGCTGGCCATTGTAGA
TGAGGGGTCCACCCGAATCTCCGCTGCACTGTCCCTTGCCACCCTCGTCC
ACCCCTCCGCAGATGTGGTACCTGGGATCGGTGCGACCGCCATGGCGTTC
GGTGCACTCCTCGTCTGAGTAGACCTTCAATTCCACCTCCTGCAGTGTGG
ATTGGATGTATCCGCCAGTCGCATTGAGTCCCCATCCGATGAGCACCCCC
TCGCCACCGGCATCCGTTTGAGGTGTGGCAAAGGCGAGCTCCGGCAACTT
TACGGGTGCAACCGTGACGCCATCAAACTCGAATGGCTCCTCCACGAGCA
GCAGTGAAATATCGTTGGCATAGTTGTTGTAGGGATTATAATCCTCGTGC
TGGATGATCTTCTTCACGCGCACCACATTCGGACCGGTGGCATTAATCTT
AGTCACTCCATACTGAACAGACAAATCCGATGCCTTGCGTCCATCCGTAC
AATGAGCAGCAGTCATTACAAACTGCTTGGAAATAATGGAGCCACCGCAG
GAATGCGAGCCACTGGATCCACGCATCGAAATCACGAAGGGGTATTTCTC
CACGCTGGAATCCGTGCCATTGACCACACGACCCATTTGGGGAGCTCCAT
GGGAAATGCCCGCGGTGGTCAAGAGGGCGAATACCGCCAGGCAGAGATCC
TGATTCCGCGACATGTCGACTGATAACT
BS11507.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16749-PA | 798 | CG16749-RA | 1..798 | 814..17 | 3965 | 99.8 | Minus |
CG12951-PA | 798 | CG12951-RA | 628..773 | 187..42 | 505 | 93.8 | Minus |
CG12951-PA | 798 | CG12951-RA | 153..215 | 662..600 | 140 | 88.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:25:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16749-RA | 873 | CG16749-RA | 7..804 | 814..17 | 3975 | 99.9 | Minus |
CG12951-RA | 857 | CG12951-RA | 94..804 | 727..17 | 1065 | 77.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:25:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9331320..9331683 | 320..683 | 1805 | 99.7 | Plus |
3R | 32079331 | 3R | 9330954..9331257 | 17..320 | 1520 | 100 | Plus |
3R | 32079331 | 3R | 9329276..9329488 | 17..229 | 675 | 87.8 | Plus |
3R | 32079331 | 3R | 9331748..9331879 | 683..814 | 660 | 100 | Plus |
3R | 32079331 | 3R | 9329643..9329983 | 322..662 | 430 | 75.1 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:25:07 has no hits.
BS11507.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:11:17 Download gff for
BS11507.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16749-PA | 1..798 | 17..814 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:42:42 Download gff for
BS11507.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16749-PA | 1..798 | 17..814 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:04:24 Download gff for
BS11507.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16749-RA | 1..804 | 17..817 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:26:49 Download gff for
BS11507.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16749-RA | 1..804 | 17..817 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:26:49 Download gff for
BS11507.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9330954..9331256 | 17..319 | 100 | <- | Plus |
3R | 9331320..9331682 | 320..682 | 99 | <- | Plus |
3R | 9331748..9331879 | 683..814 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:04:24 Download gff for
BS11507.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5156676..5156978 | 17..319 | 100 | <- | Plus |
arm_3R | 5157042..5157404 | 320..682 | 99 | <- | Plus |
arm_3R | 5157470..5157601 | 683..814 | 100 | | Plus |
BS11507.5prime Sequence
820 bp (735 high quality bases) assembled on 2006-05-08
> BS11507.5prime
GAAGTTATCAGTCGACATGTCGCGGAATCAGGATCTCTGCCTGGCGGTAT
TCGCCCTCTTGACCACCGCGGGCATTTCCCATGGAGCTCCCCAAATGGGT
CGTGTGGTCAATGGCACGGATTCCAGCGTGGAGAAATACCCCTTCGTGAT
TTCGATGCGTGGATCCAGTGGCTCGCATTCCTGCGGTGGCTCCATTATTT
CCAAGCAGTTTGTAATGACTGCTGCTCATTGTACGGATGGACGCAAGGCA
TCGGATTTGTCTGTTCAGTATGGAGTGACTAAGATTAATGCCACCGGTCC
GAATGTGGTGCGCGTGAAGAAGATCATCCAGCACGAGGATTATAATCCCT
ACAACAACTATGCCAACGATATTTCACTGCTGCTCGTGGAGGAGCCATTC
GAGTTTGATGGCGTCACGGTTGCACCCGTAAAGTTGCCGGAGCTCGCCTT
TGCCACACCTCAAACGGATGCCGGTGGCGAGGGGGTGCTCATCGGATGGG
GACTCAATGCGACTGGCGGATACATCCAATCCACACTGCAGGAGGTGGAA
TTGAAGGTCTACTCAGACGAGGAGTGCACCGAACGCCATGGCGGTCGCAC
CGATCCCAGGTACCACATCTGCGGAGGGGTGGACGAGGGTGGCAAGGGAC
AGTGCAGCGGAGATTCGGGTGGACCCCTCATCTACAATGGCCAGCANGTG
GGCATCGTGTCGTGGAGCATCAAGCCCTGCACCGTGGCACCCTATCCGGG
TGTTTACTGCAAGGTCAGCCAGTATGTTGACTGGATCAAGAAGAGCCAGA
TCATCTTGGGCTAGAAGCTT
BS11507.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16749-PA | 798 | CG16749-RA | 1..793 | 17..809 | 3921 | 99.7 | Plus |
CG12951-PA | 798 | CG12951-RA | 628..773 | 644..789 | 511 | 93.8 | Plus |
CG12951-PA | 798 | CG12951-RA | 153..215 | 169..231 | 140 | 88.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:59:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16749-RA | 873 | CG16749-RA | 7..804 | 17..814 | 3949 | 99.6 | Plus |
CG12951-RA | 857 | CG12951-RA | 94..779 | 104..789 | 1064 | 77.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:59:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9331320..9331683 | 511..148 | 1805 | 99.7 | Minus |
3R | 32079331 | 3R | 9330954..9331257 | 814..511 | 1494 | 99.3 | Minus |
3R | 32079331 | 3R | 9329301..9329488 | 789..602 | 674 | 90.4 | Minus |
3R | 32079331 | 3R | 9331748..9331879 | 148..17 | 660 | 100 | Minus |
3R | 32079331 | 3R | 9329643..9329983 | 509..169 | 430 | 75.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:59:35 has no hits.
BS11507.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:11:19 Download gff for
BS11507.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16749-PA | 1..798 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:42:43 Download gff for
BS11507.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16749-PA | 1..798 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:20:03 Download gff for
BS11507.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16749-RA | 1..808 | 14..820 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:11:59 Download gff for
BS11507.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16749-RA | 1..808 | 14..820 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:11:59 Download gff for
BS11507.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9330950..9331256 | 512..820 | 98 | <- | Minus |
3R | 9331320..9331682 | 149..511 | 99 | <- | Minus |
3R | 9331748..9331879 | 17..148 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:20:03 Download gff for
BS11507.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5156672..5156978 | 512..820 | 98 | <- | Minus |
arm_3R | 5157042..5157404 | 149..511 | 99 | <- | Minus |
arm_3R | 5157470..5157601 | 17..148 | 100 | | Minus |
BS11507.complete Sequence
830 bp assembled on 2006-11-01
> BS11507.complete
GAAGTTATCAGTCGACATGTCGCGGAATCAGGATCTCTGCCTGGCGGTAT
TCGCCCTCTTGACCACCGCGGGCATTTCCCATGGAGCTCCCCAAATGGGT
CGTGTGGTCAATGGCACGGATTCCAGCGTGGAGAAATACCCCTTCGTGAT
TTCGATGCGTGGATCCAGTGGCTCGCATTCCTGCGGTGGCTCCATTATTT
CCAAGCAGTTTGTAATGACTGCTGCTCATTGTACGGATGGACGCAAGGCA
TCGGATTTGTCTGTTCAGTATGGAGTGACTAAGATTAATGCCACCGGTCC
GAATGTGGTGCGCGTGAAGAAGATCATCCAGCACGAGGATTATAATCCCT
ACAACAACTATGCCAACGATATTTCACTGCTGCTCGTGGAGGAGCCATTC
GAGTTTGATGGCGTCACGGTTGCACCCGTAAAGTTGCCGGAGCTCGCCTT
TGCCACACCTCAAACGGATGCCGGTGGCGAGGGGGTGCTCATCGGATGGG
GACTCAATGCGACTGGCGGATACATCCAATCCACACTGCAGGAGGTGGAA
TTGAAGGTCTACTCAGACGAGGAGTGCACCGAACGCCATGGCGGTCGCAC
CGATCCCAGGTACCACATCTGCGGAGGGGTGGACGAGGGTGGCAAGGGAC
AGTGCAGCGGAGATTCGGGTGGACCCCTCATCTACAATGGCCAGCAGGTG
GGCATCGTGTCGTGGAGCATCAAGCCCTGCACCGTGGCACCCTATCCGGG
TGTTTACTGCAAGGTCAGCCAGTATGTTGACTGGATCAAGAAGAGCCAGA
TCATCTTGGCCTAGAAGCTTTCTAGACCAT
BS11507.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:59:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16749-RA | 798 | CG16749-PA | 1..798 | 17..814 | 3975 | 99.9 | Plus |
CG12951-RA | 798 | CG12951-PA | 88..798 | 104..814 | 1050 | 76.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16749-RA | 873 | CG16749-RA | 7..804 | 17..814 | 3975 | 99.9 | Plus |
CG12951-RA | 857 | CG12951-RA | 94..804 | 104..814 | 1050 | 76.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9331320..9331683 | 511..148 | 1805 | 99.7 | Minus |
3R | 32079331 | 3R | 9330954..9331257 | 814..511 | 1520 | 100 | Minus |
3R | 32079331 | 3R | 9329276..9329488 | 814..602 | 675 | 87.8 | Minus |
3R | 32079331 | 3R | 9331748..9331879 | 148..17 | 660 | 100 | Minus |
3R | 32079331 | 3R | 9329643..9329983 | 509..169 | 430 | 75.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:59:50 has no hits.
BS11507.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:17 Download gff for
BS11507.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16749-RA | 1..798 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:20 Download gff for
BS11507.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16749-RA | 17..814 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:35:45 Download gff for
BS11507.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16749-RA | 7..804 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:17 Download gff for
BS11507.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16749-RA | 17..814 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:35 Download gff for
BS11507.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16749-RA | 7..804 | 17..814 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:35 Download gff for
BS11507.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9331748..9331879 | 17..148 | 100 | | Minus |
3R | 9330954..9331256 | 512..814 | 100 | <- | Minus |
3R | 9331320..9331682 | 149..511 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:45 Download gff for
BS11507.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5156676..5156978 | 512..814 | 100 | <- | Minus |
arm_3R | 5157042..5157404 | 149..511 | 99 | <- | Minus |
arm_3R | 5157470..5157601 | 17..148 | 100 | | Minus |
BS11507.pep Sequence
Translation from 16 to 813
> BS11507.pep
MSRNQDLCLAVFALLTTAGISHGAPQMGRVVNGTDSSVEKYPFVISMRGS
SGSHSCGGSIISKQFVMTAAHCTDGRKASDLSVQYGVTKINATGPNVVRV
KKIIQHEDYNPYNNYANDISLLLVEEPFEFDGVTVAPVKLPELAFATPQT
DAGGEGVLIGWGLNATGGYIQSTLQEVELKVYSDEECTERHGGRTDPRYH
ICGGVDEGGKGQCSGDSGGPLIYNGQQVGIVSWSIKPCTVAPYPGVYCKV
SQYVDWIKKSQIILA*
BS11507.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:06:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16749-PA | 265 | CG16749-PA | 1..265 | 1..265 | 1408 | 100 | Plus |
CG12951-PA | 265 | CG12951-PA | 1..265 | 1..265 | 1088 | 75.8 | Plus |
CG32808-PA | 284 | CG32808-PA | 7..255 | 9..257 | 560 | 47.2 | Plus |
etaTry-PA | 262 | CG12386-PA | 9..258 | 9..261 | 385 | 36 | Plus |
CG31954-PA | 277 | CG31954-PA | 49..273 | 28..259 | 382 | 40.5 | Plus |