Clone Sequence Records
BS11511.3prime Sequence
834 bp (833 high quality bases) assembled on 2006-05-08
> BS11511.3prime
ATGGTCTAGAAAGCTTCTAGACAGTCAGGGCGTAAAGGGGGAAGGGTGAG
GTCATGTCGATGCCCAGTTTCTTGATCACATAGTTGATCTGGTCCTGGCT
CTTCAGTCCGTAAGCCTCGAAGGGCTTCACATTAAAGCGACTGATGCGAT
TTCCGGAGATGCCCATGAGGAACTTGTAGTAGCTGGGCCGCAGGGAACGA
GCCTCCAGGATTGCCGAGTGGAAGAGCACGGCCGTGAAGAATCCGTACAT
GAGCATCGCAAAGTGCGGCACCTCGGGCAACTTGCCCTCCGCGATGCCCC
AGTTGTAGAGCAGATGCATGGACTTCCACATTAGATAACAGGCCACCGTG
GTGTTCGGGAAACGGAAGAAGCCAATCGATCCGATGAGGCCAGCCGGAAT
GGCGAAGAGAGCATTGTCGAAACCAAACGTGTGACGCAGTCCGCAGGTAG
TCGACTTGAAAAGAAATGAGAAGATGCCCAGCGCCAATCCCAACTGCAAG
GATCCCCCGTTGAAGATGTGCTTGCGCCACTGCATCTTAGACTTAAAGAT
CTTGGGAATGTTGAGCAGCAGCTTTAGACCCACCGATAGGCCAACACCGC
CCAGGAATGGCTTTAGTCCTCCAATAAGGGCGTAGGGAACACAGCCCCTC
TTGTGGGGACAACTTGGATGTTTGGCCTTCAGCATGCGGTCATAGAGCTG
TACGTAGGCTGAAATGCTTTGGAAGTTGAGGGGAGCCTGGCGAGAGCTTT
GCGTGGTGGTGACCACCGGTGTCTTCAGTGGACCCTCGTCCTCTTTGCCC
ACGATCAGGGCAATAGCCTTGAACGTCGGATCCT
BS11511.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31259-PA | 1368 | CG31259-RA | 551..1368 | 834..17 | 4090 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:25:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31259-RB | 2464 | CG31259-RB | 1028..1846 | 834..16 | 4095 | 100 | Minus |
CG31259-RA | 1919 | CG31259-RA | 1028..1846 | 834..16 | 4095 | 100 | Minus |
CG31454-RA | 1736 | CG31454-RA | 1119..1706 | 634..47 | 570 | 74 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:24:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8525609..8526049 | 456..16 | 2205 | 100 | Minus |
3R | 32079331 | 3R | 8525158..8525537 | 834..455 | 1900 | 100 | Minus |
3R | 32079331 | 3R | 8523099..8523490 | 438..47 | 295 | 71.7 | Minus |
3R | 32079331 | 3R | 8522849..8523028 | 634..455 | 270 | 76.7 | Minus |
Blast to na_te.dros performed on 2015-02-03 07:25:03 has no hits.
BS11511.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:11:27 Download gff for
BS11511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31259-PA | 551..1368 | 17..834 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:42:56 Download gff for
BS11511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31259-PA | 551..1368 | 17..834 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:34 Download gff for
BS11511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31259-RA | 1028..1854 | 9..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:45:51 Download gff for
BS11511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31259-RA | 1028..1854 | 9..834 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:45:51 Download gff for
BS11511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8525158..8525537 | 455..834 | 100 | -> | Minus |
3R | 8525611..8526057 | 9..454 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:34 Download gff for
BS11511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4350880..4351259 | 455..834 | 100 | -> | Minus |
arm_3R | 4351333..4351779 | 9..454 | 99 | | Minus |
BS11511.5prime Sequence
906 bp (805 high quality bases) assembled on 2006-05-08
> BS11511.5prime
GAAGTTATCAGTCGACATGGGCGCCCAAAGTAAACTGGCCGAGATAGCCT
TGAACTGCACCTGCTATGAGTATCACCATCCGTGGACAAAGAGCTGTGCC
TGCGCTGCGGCAGGAATGATGATCTCTGAGATCCCTCCCAGTCTGCGCAC
CTACGCCACTGTATACGTGTTTGCTCTAATCATGCGAGGACGCATTCCAT
CGCTGAAGGATCTGAGACGCACTGCATCTGGAATCCTACAGTCGACAGCG
TTTCTTTCGATGAATGGAGGCCTCTTTGTCTTTGCCGTGTGCTACTTGCG
ACAGATCTTGGGAGGATTCTACTTCGGCACAGTTGCTTGGCTGCCCTCGT
TTTTGGCCAGCTTTGCATGTCTTGCCTTCGAGCGTCCGGAACGCCGTGCT
CCTCTCGCATTGTATGTGGCCAATGTGGGTATCGAAACGCTGTGGAAGAT
GATGGAGGCACGAGGCTGGGTTCGATCCATTCCTAATGGACAGGTGTTCA
TCATGGGTGCAAGTGTGACCGCCTTGATGTATTTATATCGCGCCGGATTG
CACAAGACAGTGGCCAAGGATCCGACGTTCAAGGCTATTGCCCTGATCGT
GGGCAAAGAGGACGAGGGTCCACTGAAGACACCGGTGGTCACCACCACGC
AAAGCTCTCGCCAGGCTCCCCTCAACTTCCAAAGCATTTCAGCCTACGTA
CAGCTCTATGACCGCATGCTGAAGGCCAAACATCCAAGTTGTCCCCACAA
GAGGGGCTGTGTTCCCTACGCCCTTATTGGAGGACTAAAGCCATTCCTGG
GCGGTGTTGGCCTATCGGTGGGTCTAAAGCTGCTGCTCAACATTCCCAAG
ATCTTTAAGTCTAAGATGCAGTGGCGCAAGCACATCTTTCACGGGGGGAT
CCCTGC
BS11511.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31259-PA | 1368 | CG31259-RA | 1..872 | 17..888 | 4360 | 100 | Plus |
CG31454-PA | 1368 | CG31454-RA | 362..431 | 378..447 | 200 | 91.4 | Plus |
CG31454-PA | 1368 | CG31454-RA | 472..536 | 488..552 | 150 | 89.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:12:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31259-RB | 2464 | CG31259-RB | 477..1366 | 16..906 | 4385 | 99.6 | Plus |
CG31259-RA | 1919 | CG31259-RA | 477..1366 | 16..906 | 4385 | 99.6 | Plus |
CG31454-RA | 1736 | CG31454-RA | 591..980 | 239..628 | 630 | 78.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:12:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8524760..8525488 | 169..897 | 3615 | 99.7 | Plus |
3R | 32079331 | 3R | 8524420..8524573 | 16..169 | 770 | 100 | Plus |
3R | 32079331 | 3R | 8522321..8522710 | 239..628 | 630 | 77.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:12:53 has no hits.
BS11511.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:11:29 Download gff for
BS11511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31259-PA | 1..889 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:42:58 Download gff for
BS11511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31259-PA | 1..889 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:20:20 Download gff for
BS11511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31259-RA | 470..1366 | 10..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:26:47 Download gff for
BS11511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31259-RA | 470..1366 | 10..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:26:47 Download gff for
BS11511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8524413..8524573 | 10..169 | 98 | -> | Plus |
3R | 8524761..8525496 | 170..906 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:20:20 Download gff for
BS11511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4350135..4350295 | 10..169 | 98 | -> | Plus |
arm_3R | 4350483..4351218 | 170..906 | 99 | | Plus |
BS11511.complete Sequence
1400 bp assembled on 2006-11-01
GenBank Submission: FJ636892
> BS11511.complete
GAAGTTATCAGTCGACATGGGCGCCCAAAGTAAACTGGCCGAGATAGCCT
TGAACTGCACCTGCTATGAGTATCACCATCCGTGGACAAAGAGCTGTGCC
TGCGCTGCGGCAGGAATGATGATCTCTGAGATCCCTCCCAGTCTGCGCAC
CTACGCCACTGTATACGTGTTTGCTCTAATCATGCGAGGACGCATTCCAT
CGCTGAAGGATCTGAGACGCACTGCATCTGGAATCCTACAGTCGACAGCG
TTTCTTTCGATGAATGGAGGCCTCTTTGTCTTTGCCGTGTGCTACTTGCG
ACAGATCTTGGGAGGATTCTACTTCGGCACAGTTGCTTGGCTGCCCTCGT
TTTTGGCCAGCTTTGCATGTCTTGCCTTCGAGCGTCCGGAACGCCGTGCT
CCTCTCGCATTGTATGTGGCCAATGTGGGTATCGAAACGCTGTGGAAGAT
GATGGAGGCACGAGGCTGGGTTCGATCCATTCCTAATGGACAGGTGTTCA
TCATGGGTGCAAGTGTGACCGCCTTGATGTATTTATATCGCGCCGGATTG
CACAAGACAGTGGCCAAGGATCCGACGTTCAAGGCTATTGCCCTGATCGT
GGGCAAAGAGGACGAGGGTCCACTGAAGACACCGGTGGTCACCACCACGC
AAAGCTCTCGCCAGGCTCCCCTCAACTTCCAAAGCATTTCAGCCTACGTA
CAGCTCTATGACCGCATGCTGAAGGCCAAACATCCAAGTTGTCCCCACAA
GAGGGGCTGTGTTCCCTACGCCCTTATTGGAGGACTAAAGCCATTCCTGG
GCGGTGTTGGCCTATCGGTGGGTCTAAAGCTGCTGCTCAACATTCCCAAG
ATCTTTAAGTCTAAGATGCAGTGGCGCAAGCACATCTTCAACGGGGGATC
CTTGCAGTTGGGATTGGCGCTGGGCATCTTCTCATTTCTTTTCAAGTCGA
CTACCTGCGGACTGCGTCACACGTTTGGTTTCGACAATGCTCTCTTCGCC
ATTCCGGCTGGCCTCATCGGATCGATTGGCTTCTTCCGTTTCCCGAACAC
CACGGTGGCCTGTTATCTAATGTGGAAGTCCATGCATCTGCTCTACAACT
GGGGCATCGCGGAGGGCAAGTTGCCCGAGGTGCCGCACTTTGCGATGCTC
ATGTACGGATTCTTCACGGCCGTGCTCTTCCACTCGGCAATCCTGGAGGC
TCGTTCCCTGCGGCCCAGCTACTACAAGTTCCTCATGGGCATCTCCGGAA
ATCGCATCAGTCGCTTTAATGTGAAGCCCTTCGAGGCTTACGGACTGAAG
AGCCAGGACCAGATCAACTATGTGATCAAGAAACTGGGCATCGACATGAC
CTCACCCTTCCCCCTTTACGCCCTGACTGTCTAGAAGCTTTCTAGACCAT
BS11511.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:10:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31259-RB | 1368 | CG31259-PB | 1..1368 | 17..1384 | 6840 | 100 | Plus |
CG31259-RA | 1368 | CG31259-PA | 1..1368 | 17..1384 | 6840 | 100 | Plus |
CG31454-RA | 1368 | CG31454-PA | 223..1338 | 239..1354 | 915 | 72.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31259-RB | 2464 | CG31259-RB | 477..1846 | 16..1385 | 6850 | 100 | Plus |
CG31259-RA | 1919 | CG31259-RA | 477..1846 | 16..1385 | 6850 | 100 | Plus |
CG31454-RA | 1736 | CG31454-RA | 591..1706 | 239..1354 | 915 | 72.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8524760..8525537 | 169..946 | 3890 | 100 | Plus |
3R | 32079331 | 3R | 8525609..8526049 | 945..1385 | 2205 | 100 | Plus |
3R | 32079331 | 3R | 8524420..8524573 | 16..169 | 770 | 100 | Plus |
3R | 32079331 | 3R | 8522321..8523028 | 239..946 | 660 | 72.9 | Plus |
3R | 32079331 | 3R | 8523099..8523490 | 963..1354 | 295 | 71.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:10:09 has no hits.
BS11511.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:18 Download gff for
BS11511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31259-RA | 1..1368 | 17..1384 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:22 Download gff for
BS11511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31259-RA | 468..1852 | 10..1392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:23 Download gff for
BS11511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31259-RA | 478..1845 | 17..1384 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:18 Download gff for
BS11511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31259-RA | 468..1852 | 10..1392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:12:22 Download gff for
BS11511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31259-RA | 478..1845 | 17..1384 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:12:22 Download gff for
BS11511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8524421..8524573 | 17..169 | 100 | -> | Plus |
3R | 8524761..8525537 | 170..946 | 100 | -> | Plus |
3R | 8525611..8526048 | 947..1384 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:23 Download gff for
BS11511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4350143..4350295 | 17..169 | 100 | -> | Plus |
arm_3R | 4350483..4351259 | 170..946 | 100 | -> | Plus |
arm_3R | 4351333..4351770 | 947..1384 | 100 | | Plus |
BS11511.pep Sequence
Translation from 16 to 1383
> BS11511.pep
MGAQSKLAEIALNCTCYEYHHPWTKSCACAAAGMMISEIPPSLRTYATVY
VFALIMRGRIPSLKDLRRTASGILQSTAFLSMNGGLFVFAVCYLRQILGG
FYFGTVAWLPSFLASFACLAFERPERRAPLALYVANVGIETLWKMMEARG
WVRSIPNGQVFIMGASVTALMYLYRAGLHKTVAKDPTFKAIALIVGKEDE
GPLKTPVVTTTQSSRQAPLNFQSISAYVQLYDRMLKAKHPSCPHKRGCVP
YALIGGLKPFLGGVGLSVGLKLLLNIPKIFKSKMQWRKHIFNGGSLQLGL
ALGIFSFLFKSTTCGLRHTFGFDNALFAIPAGLIGSIGFFRFPNTTVACY
LMWKSMHLLYNWGIAEGKLPEVPHFAMLMYGFFTAVLFHSAILEARSLRP
SYYKFLMGISGNRISRFNVKPFEAYGLKSQDQINYVIKKLGIDMTSPFPL
YALTV*
BS11511.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31259-PB | 455 | CG31259-PB | 1..455 | 1..455 | 2389 | 100 | Plus |
CG31259-PA | 455 | CG31259-PA | 1..455 | 1..455 | 2389 | 100 | Plus |
CG31454-PA | 455 | CG31454-PA | 1..455 | 1..455 | 1648 | 67.3 | Plus |
CG11737-PC | 455 | CG11737-PC | 1..452 | 1..452 | 1187 | 50.5 | Plus |
CG11737-PB | 455 | CG11737-PB | 1..452 | 1..452 | 1187 | 50.5 | Plus |