Clone BS11511 Report

Search the DGRC for BS11511

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:115
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG31259-RA
Protein status:BS11511.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11511.3prime Sequence

834 bp (833 high quality bases) assembled on 2006-05-08

> BS11511.3prime
ATGGTCTAGAAAGCTTCTAGACAGTCAGGGCGTAAAGGGGGAAGGGTGAG
GTCATGTCGATGCCCAGTTTCTTGATCACATAGTTGATCTGGTCCTGGCT
CTTCAGTCCGTAAGCCTCGAAGGGCTTCACATTAAAGCGACTGATGCGAT
TTCCGGAGATGCCCATGAGGAACTTGTAGTAGCTGGGCCGCAGGGAACGA
GCCTCCAGGATTGCCGAGTGGAAGAGCACGGCCGTGAAGAATCCGTACAT
GAGCATCGCAAAGTGCGGCACCTCGGGCAACTTGCCCTCCGCGATGCCCC
AGTTGTAGAGCAGATGCATGGACTTCCACATTAGATAACAGGCCACCGTG
GTGTTCGGGAAACGGAAGAAGCCAATCGATCCGATGAGGCCAGCCGGAAT
GGCGAAGAGAGCATTGTCGAAACCAAACGTGTGACGCAGTCCGCAGGTAG
TCGACTTGAAAAGAAATGAGAAGATGCCCAGCGCCAATCCCAACTGCAAG
GATCCCCCGTTGAAGATGTGCTTGCGCCACTGCATCTTAGACTTAAAGAT
CTTGGGAATGTTGAGCAGCAGCTTTAGACCCACCGATAGGCCAACACCGC
CCAGGAATGGCTTTAGTCCTCCAATAAGGGCGTAGGGAACACAGCCCCTC
TTGTGGGGACAACTTGGATGTTTGGCCTTCAGCATGCGGTCATAGAGCTG
TACGTAGGCTGAAATGCTTTGGAAGTTGAGGGGAGCCTGGCGAGAGCTTT
GCGTGGTGGTGACCACCGGTGTCTTCAGTGGACCCTCGTCCTCTTTGCCC
ACGATCAGGGCAATAGCCTTGAACGTCGGATCCT

BS11511.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG31259-PA 1368 CG31259-RA 551..1368 834..17 4090 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:25:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG31259-RB 2464 CG31259-RB 1028..1846 834..16 4095 100 Minus
CG31259-RA 1919 CG31259-RA 1028..1846 834..16 4095 100 Minus
CG31454-RA 1736 CG31454-RA 1119..1706 634..47 570 74 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8525609..8526049 456..16 2205 100 Minus
3R 32079331 3R 8525158..8525537 834..455 1900 100 Minus
3R 32079331 3R 8523099..8523490 438..47 295 71.7 Minus
3R 32079331 3R 8522849..8523028 634..455 270 76.7 Minus
Blast to na_te.dros performed on 2015-02-03 07:25:03 has no hits.

BS11511.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:11:27 Download gff for BS11511.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31259-PA 551..1368 17..834 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:42:56 Download gff for BS11511.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31259-PA 551..1368 17..834 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:34 Download gff for BS11511.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31259-RA 1028..1854 9..834 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:45:51 Download gff for BS11511.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31259-RA 1028..1854 9..834 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:45:51 Download gff for BS11511.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8525158..8525537 455..834 100 -> Minus
3R 8525611..8526057 9..454 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:34 Download gff for BS11511.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4350880..4351259 455..834 100 -> Minus
arm_3R 4351333..4351779 9..454 99   Minus

BS11511.5prime Sequence

906 bp (805 high quality bases) assembled on 2006-05-08

> BS11511.5prime
GAAGTTATCAGTCGACATGGGCGCCCAAAGTAAACTGGCCGAGATAGCCT
TGAACTGCACCTGCTATGAGTATCACCATCCGTGGACAAAGAGCTGTGCC
TGCGCTGCGGCAGGAATGATGATCTCTGAGATCCCTCCCAGTCTGCGCAC
CTACGCCACTGTATACGTGTTTGCTCTAATCATGCGAGGACGCATTCCAT
CGCTGAAGGATCTGAGACGCACTGCATCTGGAATCCTACAGTCGACAGCG
TTTCTTTCGATGAATGGAGGCCTCTTTGTCTTTGCCGTGTGCTACTTGCG
ACAGATCTTGGGAGGATTCTACTTCGGCACAGTTGCTTGGCTGCCCTCGT
TTTTGGCCAGCTTTGCATGTCTTGCCTTCGAGCGTCCGGAACGCCGTGCT
CCTCTCGCATTGTATGTGGCCAATGTGGGTATCGAAACGCTGTGGAAGAT
GATGGAGGCACGAGGCTGGGTTCGATCCATTCCTAATGGACAGGTGTTCA
TCATGGGTGCAAGTGTGACCGCCTTGATGTATTTATATCGCGCCGGATTG
CACAAGACAGTGGCCAAGGATCCGACGTTCAAGGCTATTGCCCTGATCGT
GGGCAAAGAGGACGAGGGTCCACTGAAGACACCGGTGGTCACCACCACGC
AAAGCTCTCGCCAGGCTCCCCTCAACTTCCAAAGCATTTCAGCCTACGTA
CAGCTCTATGACCGCATGCTGAAGGCCAAACATCCAAGTTGTCCCCACAA
GAGGGGCTGTGTTCCCTACGCCCTTATTGGAGGACTAAAGCCATTCCTGG
GCGGTGTTGGCCTATCGGTGGGTCTAAAGCTGCTGCTCAACATTCCCAAG
ATCTTTAAGTCTAAGATGCAGTGGCGCAAGCACATCTTTCACGGGGGGAT
CCCTGC

BS11511.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG31259-PA 1368 CG31259-RA 1..872 17..888 4360 100 Plus
CG31454-PA 1368 CG31454-RA 362..431 378..447 200 91.4 Plus
CG31454-PA 1368 CG31454-RA 472..536 488..552 150 89.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:12:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG31259-RB 2464 CG31259-RB 477..1366 16..906 4385 99.6 Plus
CG31259-RA 1919 CG31259-RA 477..1366 16..906 4385 99.6 Plus
CG31454-RA 1736 CG31454-RA 591..980 239..628 630 78.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:12:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8524760..8525488 169..897 3615 99.7 Plus
3R 32079331 3R 8524420..8524573 16..169 770 100 Plus
3R 32079331 3R 8522321..8522710 239..628 630 77.4 Plus
Blast to na_te.dros performed on 2015-02-12 11:12:53 has no hits.

BS11511.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:11:29 Download gff for BS11511.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31259-PA 1..889 17..906 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:42:58 Download gff for BS11511.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31259-PA 1..889 17..906 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:20:20 Download gff for BS11511.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31259-RA 470..1366 10..906 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:26:47 Download gff for BS11511.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31259-RA 470..1366 10..906 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:26:47 Download gff for BS11511.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8524413..8524573 10..169 98 -> Plus
3R 8524761..8525496 170..906 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:20:20 Download gff for BS11511.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4350135..4350295 10..169 98 -> Plus
arm_3R 4350483..4351218 170..906 99   Plus

BS11511.complete Sequence

1400 bp assembled on 2006-11-01

GenBank Submission: FJ636892

> BS11511.complete
GAAGTTATCAGTCGACATGGGCGCCCAAAGTAAACTGGCCGAGATAGCCT
TGAACTGCACCTGCTATGAGTATCACCATCCGTGGACAAAGAGCTGTGCC
TGCGCTGCGGCAGGAATGATGATCTCTGAGATCCCTCCCAGTCTGCGCAC
CTACGCCACTGTATACGTGTTTGCTCTAATCATGCGAGGACGCATTCCAT
CGCTGAAGGATCTGAGACGCACTGCATCTGGAATCCTACAGTCGACAGCG
TTTCTTTCGATGAATGGAGGCCTCTTTGTCTTTGCCGTGTGCTACTTGCG
ACAGATCTTGGGAGGATTCTACTTCGGCACAGTTGCTTGGCTGCCCTCGT
TTTTGGCCAGCTTTGCATGTCTTGCCTTCGAGCGTCCGGAACGCCGTGCT
CCTCTCGCATTGTATGTGGCCAATGTGGGTATCGAAACGCTGTGGAAGAT
GATGGAGGCACGAGGCTGGGTTCGATCCATTCCTAATGGACAGGTGTTCA
TCATGGGTGCAAGTGTGACCGCCTTGATGTATTTATATCGCGCCGGATTG
CACAAGACAGTGGCCAAGGATCCGACGTTCAAGGCTATTGCCCTGATCGT
GGGCAAAGAGGACGAGGGTCCACTGAAGACACCGGTGGTCACCACCACGC
AAAGCTCTCGCCAGGCTCCCCTCAACTTCCAAAGCATTTCAGCCTACGTA
CAGCTCTATGACCGCATGCTGAAGGCCAAACATCCAAGTTGTCCCCACAA
GAGGGGCTGTGTTCCCTACGCCCTTATTGGAGGACTAAAGCCATTCCTGG
GCGGTGTTGGCCTATCGGTGGGTCTAAAGCTGCTGCTCAACATTCCCAAG
ATCTTTAAGTCTAAGATGCAGTGGCGCAAGCACATCTTCAACGGGGGATC
CTTGCAGTTGGGATTGGCGCTGGGCATCTTCTCATTTCTTTTCAAGTCGA
CTACCTGCGGACTGCGTCACACGTTTGGTTTCGACAATGCTCTCTTCGCC
ATTCCGGCTGGCCTCATCGGATCGATTGGCTTCTTCCGTTTCCCGAACAC
CACGGTGGCCTGTTATCTAATGTGGAAGTCCATGCATCTGCTCTACAACT
GGGGCATCGCGGAGGGCAAGTTGCCCGAGGTGCCGCACTTTGCGATGCTC
ATGTACGGATTCTTCACGGCCGTGCTCTTCCACTCGGCAATCCTGGAGGC
TCGTTCCCTGCGGCCCAGCTACTACAAGTTCCTCATGGGCATCTCCGGAA
ATCGCATCAGTCGCTTTAATGTGAAGCCCTTCGAGGCTTACGGACTGAAG
AGCCAGGACCAGATCAACTATGTGATCAAGAAACTGGGCATCGACATGAC
CTCACCCTTCCCCCTTTACGCCCTGACTGTCTAGAAGCTTTCTAGACCAT

BS11511.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:10:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG31259-RB 1368 CG31259-PB 1..1368 17..1384 6840 100 Plus
CG31259-RA 1368 CG31259-PA 1..1368 17..1384 6840 100 Plus
CG31454-RA 1368 CG31454-PA 223..1338 239..1354 915 72.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG31259-RB 2464 CG31259-RB 477..1846 16..1385 6850 100 Plus
CG31259-RA 1919 CG31259-RA 477..1846 16..1385 6850 100 Plus
CG31454-RA 1736 CG31454-RA 591..1706 239..1354 915 72.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8524760..8525537 169..946 3890 100 Plus
3R 32079331 3R 8525609..8526049 945..1385 2205 100 Plus
3R 32079331 3R 8524420..8524573 16..169 770 100 Plus
3R 32079331 3R 8522321..8523028 239..946 660 72.9 Plus
3R 32079331 3R 8523099..8523490 963..1354 295 71.7 Plus
Blast to na_te.dros performed on 2014-11-27 08:10:09 has no hits.

BS11511.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:18 Download gff for BS11511.complete
Subject Subject Range Query Range Percent Splice Strand
CG31259-RA 1..1368 17..1384 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:22 Download gff for BS11511.complete
Subject Subject Range Query Range Percent Splice Strand
CG31259-RA 468..1852 10..1392 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:23 Download gff for BS11511.complete
Subject Subject Range Query Range Percent Splice Strand
CG31259-RA 478..1845 17..1384 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:18 Download gff for BS11511.complete
Subject Subject Range Query Range Percent Splice Strand
CG31259-RA 468..1852 10..1392 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:12:22 Download gff for BS11511.complete
Subject Subject Range Query Range Percent Splice Strand
CG31259-RA 478..1845 17..1384 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:12:22 Download gff for BS11511.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8524421..8524573 17..169 100 -> Plus
3R 8524761..8525537 170..946 100 -> Plus
3R 8525611..8526048 947..1384 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:23 Download gff for BS11511.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4350143..4350295 17..169 100 -> Plus
arm_3R 4350483..4351259 170..946 100 -> Plus
arm_3R 4351333..4351770 947..1384 100   Plus

BS11511.pep Sequence

Translation from 16 to 1383

> BS11511.pep
MGAQSKLAEIALNCTCYEYHHPWTKSCACAAAGMMISEIPPSLRTYATVY
VFALIMRGRIPSLKDLRRTASGILQSTAFLSMNGGLFVFAVCYLRQILGG
FYFGTVAWLPSFLASFACLAFERPERRAPLALYVANVGIETLWKMMEARG
WVRSIPNGQVFIMGASVTALMYLYRAGLHKTVAKDPTFKAIALIVGKEDE
GPLKTPVVTTTQSSRQAPLNFQSISAYVQLYDRMLKAKHPSCPHKRGCVP
YALIGGLKPFLGGVGLSVGLKLLLNIPKIFKSKMQWRKHIFNGGSLQLGL
ALGIFSFLFKSTTCGLRHTFGFDNALFAIPAGLIGSIGFFRFPNTTVACY
LMWKSMHLLYNWGIAEGKLPEVPHFAMLMYGFFTAVLFHSAILEARSLRP
SYYKFLMGISGNRISRFNVKPFEAYGLKSQDQINYVIKKLGIDMTSPFPL
YALTV*

BS11511.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG31259-PB 455 CG31259-PB 1..455 1..455 2389 100 Plus
CG31259-PA 455 CG31259-PA 1..455 1..455 2389 100 Plus
CG31454-PA 455 CG31454-PA 1..455 1..455 1648 67.3 Plus
CG11737-PC 455 CG11737-PC 1..452 1..452 1187 50.5 Plus
CG11737-PB 455 CG11737-PB 1..452 1..452 1187 50.5 Plus