Clone BS11513 Report

Search the DGRC for BS11513

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:115
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG15168-RA
Protein status:BS11513.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11513.3prime Sequence

360 bp (359 high quality bases) assembled on 2006-05-08

> BS11513.3prime
ATGGTCTAGAAAGCTTTTATTCCGGGGGCGTATATCCAGGATTTAAGGCA
CGACCACGGTGATTGAAGGAATAGAACGAGGGGAAGTTGCCCAAGGTGTC
CCAAGTTTTCTGTTGCATGTCCACGGTGGCGCGAATTTCCTTGAAGTTGC
CAACGATCTCGATGATGTTGTAAATCACAATCACCAAACTGATGACGGTC
TGCAGGATAATGTCCAATGGAAGGCTATTCCATTCCTGCTCCGTCAGCCT
CAAATAGGTGCGATGATGGGCAGCAGAAAAAGCAGCATGTGCCAGGCTGG
CAAATCCGGCAATTAGCAAGAGTTTGTTAAACAGTTTACTGCCCATGTCG
ACTGATAACT

BS11513.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG15168-PA 330 CG15168-RA 1..330 346..17 1650 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:07:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG15168-RA 492 CG15168-RA 83..412 346..17 1650 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 01:07:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18988057..18988251 211..17 975 100 Minus
2L 23513712 2L 18987789..18987870 346..265 410 100 Minus
2L 23513712 2L 18987936..18987988 264..212 265 100 Minus
Blast to na_te.dros performed on 2015-02-11 01:07:16 has no hits.

BS11513.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:11:30 Download gff for BS11513.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15168-PA 1..330 17..346 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:42:59 Download gff for BS11513.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15168-PA 1..330 17..346 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 15:10:31 Download gff for BS11513.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15168-RA 74..423 8..355 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:27:29 Download gff for BS11513.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15168-RA 74..423 8..355 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:27:29 Download gff for BS11513.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 18987780..18987870 265..355 95 -> Minus
2L 18987936..18987988 212..264 100 -> Minus
2L 18988057..18988262 8..211 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 15:10:31 Download gff for BS11513.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18987780..18987870 265..355 95 -> Minus
arm_2L 18987936..18987988 212..264 100 -> Minus
arm_2L 18988057..18988262 8..211 98   Minus

BS11513.5prime Sequence

360 bp (359 high quality bases) assembled on 2006-05-08

> BS11513.5prime
GAAGTTATCAGTCGACATGGGCAGTAAACTGTTTAACAAACTCTTGCTAA
TTGCCGGATTTGCCAGCCTGGCACATGCTGCTTTTTCTGCTGCCCATCAT
CGCACCTATTTGAGGCTGACGGAGCAGGAATGGAATAGCCTTCCATTGGA
CATTATCCTGCAGACCGTCATCAGTTTGGTGATTGTGATTTACAACATCA
TCGAGATCGTTGGCAACTTCAAGGAAATTCGCGCCACCGTGGACATGCAA
CAGAAAACTTGGGACACCTTGGGCAACTTCCCCTCGTTCTATTCCTTCAA
TCACCGTGGTCGTGCCTTAAATCCTGGATATACGCCCCCGGAATAAAAGC
TTTCTAGACC

BS11513.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG15168-PA 330 CG15168-RA 1..330 17..346 1650 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:05:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG15168-RA 492 CG15168-RA 83..412 17..346 1650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:05:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18988057..18988251 152..346 975 100 Plus
2L 23513712 2L 18987789..18987870 17..98 410 100 Plus
2L 23513712 2L 18987936..18987988 99..151 265 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:05:14 has no hits.

BS11513.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:11:31 Download gff for BS11513.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15168-PA 1..330 17..346 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:43:00 Download gff for BS11513.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15168-PA 1..330 17..346 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:51:38 Download gff for BS11513.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15168-RA 74..423 8..355 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:03:20 Download gff for BS11513.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15168-RA 74..423 8..355 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:03:20 Download gff for BS11513.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 18987780..18987870 8..98 95 -> Plus
2L 18987936..18987988 99..151 100 -> Plus
2L 18988057..18988262 152..355 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:51:38 Download gff for BS11513.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18987780..18987870 8..98 95 -> Plus
arm_2L 18987936..18987988 99..151 100 -> Plus
arm_2L 18988057..18988262 152..355 98   Plus

BS11513.complete Sequence

362 bp assembled on 2006-11-01

GenBank Submission: FJ636893

> BS11513.complete
GAAGTTATCAGTCGACATGGGCAGTAAACTGTTTAACAAACTCTTGCTAA
TTGCCGGATTTGCCAGCCTGGCACATGCTGCTTTTTCTGCTGCCCATCAT
CGCACCTATTTGAGGCTGACGGAGCAGGAATGGAATAGCCTTCCATTGGA
CATTATCCTGCAGACCGTCATCAGTTTGGTGATTGTGATTTACAACATCA
TCGAGATCGTTGGCAACTTCAAGGAAATTCGCGCCACCGTGGACATGCAA
CAGAAAACTTGGGACACCTTGGGCAACTTCCCCTCGTTCTATTCCTTCAA
TCACCGTGGTCGTGCCTTAAATCCTGGATATACGCCCCCGGAATAAAAGC
TTTCTAGACCAT

BS11513.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:50:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG15168-RA 330 CG15168-PA 1..330 17..346 1650 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG15168-RA 492 CG15168-RA 83..412 17..346 1650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18988057..18988251 152..346 975 100 Plus
2L 23513712 2L 18987789..18987870 17..98 410 100 Plus
2L 23513712 2L 18987936..18987988 99..151 265 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:50:06 has no hits.

BS11513.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:19 Download gff for BS11513.complete
Subject Subject Range Query Range Percent Splice Strand
CG15168-RA 1..330 17..346 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:23 Download gff for BS11513.complete
Subject Subject Range Query Range Percent Splice Strand
CG15168-RA 54..403 8..355 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:26:54 Download gff for BS11513.complete
Subject Subject Range Query Range Percent Splice Strand
CG15168-RA 83..410 17..344 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:19 Download gff for BS11513.complete
Subject Subject Range Query Range Percent Splice Strand
CG15168-RA 54..403 8..355 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:05:38 Download gff for BS11513.complete
Subject Subject Range Query Range Percent Splice Strand
CG15168-RA 83..410 17..344 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:05:38 Download gff for BS11513.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18987789..18987870 17..98 100 -> Plus
2L 18987936..18987988 99..151 100 -> Plus
2L 18988057..18988249 152..344 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:26:54 Download gff for BS11513.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18987789..18987870 17..98 100 -> Plus
arm_2L 18987936..18987988 99..151 100 -> Plus
arm_2L 18988057..18988249 152..344 100   Plus

BS11513.pep Sequence

Translation from 16 to 345

> BS11513.pep
MGSKLFNKLLLIAGFASLAHAAFSAAHHRTYLRLTEQEWNSLPLDIILQT
VISLVIVIYNIIEIVGNFKEIRATVDMQQKTWDTLGNFPSFYSFNHRGRA
LNPGYTPPE*

BS11513.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG15168-PA 109 CG15168-PA 1..109 1..109 566 100 Plus