Clone Sequence Records
BS11514.3prime Sequence
807 bp (765 high quality bases) assembled on 2006-05-08
> BS11514.3prime
ATGGTCTAGAAAGCTTTTACAACAAGAACTTTTTAACGCTTTGGGCATAG
GCTGTATTGGTCAGCTTTTCATTGAGCGCCTCCTTGGGAAGCCACTCGAA
CTTGGTCAGATTTTCGGGCACCTGGCCGGACCGCAGGGATGCTCTGTAGA
AGAAGACCTTGGCTCCGACAGTCTCCGTCCGCTGGTTTCTGGGATACTTG
TATTTGTGGAAGCCCACTGGGGCGTTGCCGTAGAAAAGAACCTGCAGCTC
CTGGCCGCAACTCTCGCGGAGCACTCTTTCTGCAGTCTGACGCATGGACT
CTCCCTCCTCACGCTTTCCCTGCGGTAGAATGAGGTGCTCCTGCTGGCCC
AGCTTCTGCTGTACCAAAAGGTAGAGCGTGTCATCCAGACAGCGGTCCGT
GGAGGTGGTTCTGTTGGCCTGGTCATCGGGCGTGGTGCGGGAGCCCAACT
GGAACTTTTTTAGCTCCTCGACGTAGGCGTCCTTGAGGTCCTGAGCTGTC
TGCTTGGATCCTGCGTCCTCCAAGTCCACCTGGATCTTGCCCTGCTTTAT
GAGCTCCGCCTGGACGATCTCACGTTCATGCTTGAGTTCATGGTCAGACT
TCAGGCTGTTTTCGTACTCCACGCGCCATAGCAAGTCTTGGAACTGTTTT
TCCAGCGGATTAAGGGACTTGGACACCACAGGGAGACGCTCTACGAGCAC
TCCGGCGTACAGGTCCCACTTTTCCGCGCTGGCGGTTGACGATTGGGCTC
GGCTCAACTCCCGGGCACCCACTTGGACAATGCGACGCAGCATGTCGACT
GATAACT
BS11514.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13922-PA | 777 | mRpL46-RA | 1..777 | 793..17 | 3885 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:48:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL46-RA | 909 | CG13922-RA | 78..854 | 793..17 | 3885 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:48:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1777516..1778292 | 793..17 | 3885 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:48:07 has no hits.
BS11514.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:11:32 Download gff for
BS11514.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13922-PA | 1..777 | 17..793 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:43:02 Download gff for
BS11514.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13922-PA | 1..777 | 17..793 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:52:34 Download gff for
BS11514.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL46-RA | 78..854 | 17..793 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:52:06 Download gff for
BS11514.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL46-RA | 78..854 | 17..793 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:52:06 Download gff for
BS11514.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1777516..1778292 | 17..793 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:52:34 Download gff for
BS11514.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1777516..1778292 | 17..793 | 100 | | Minus |
BS11514.5prime Sequence
807 bp (788 high quality bases) assembled on 2006-05-08
> BS11514.5prime
GAAGTTATCAGTCGACATGCTGCGTCGCATTGTCCAAGTGGGTGCCCGGG
AGTTGAGCCGAGCCCAATCGTCAACCGCCAGCGCGGAAAAGTGGGACCTG
TACGCCGGAGTGCTCGTAGAGCGTCTCCCTGTGGTGTCCAAGTCCCTTAA
TCCGCTGGAAAAACAGTTCCAAGACTTGCTATGGCGCGTGGAGTACGAAA
ACAGCCTGAAGTCTGACCATGAACTCAAGCATGAACGTGAGATCGTCCAG
GCGGAGCTCATAAAGCAGGGCAAGATCCAGGTGGACTTGGAGGACGCAGG
ATCCAAGCAGACAGCTCAGGACCTCAAGGACGCCTACGTCGAGGAGCTAA
AAAAGTTCCAGTTGGGCTCCCGCACCACGCCCGATGACCAGGCCAACAGA
ACCACCTCCACGGACCGCTGTCTGGATGACACGCTCTACCTTTTGGTACA
GCAGAAGCTGGGCCAGCAGGAGCACCTCATTCTACCGCAGGGAAAGCGTG
AGGAGGGAGAGTCCATGCGTCAGACTGCAGAAAGAGTGCTCCGCGAGAGT
TGCGGCCAGGAGCTGCAGGTTCTTTTCTACGGCAACGCCCCAGTGGGCTT
CCACAAATACAAGTATCCCAGAAACCAGCGGACGGAGACTGTCGGAGCCA
AGGTCTTCTTCTACAGAGCATCCCTGCGGTCCGGCCAGGTGCCCGAAAAT
CTGACCAAGTTCGAGTGGCTTCCCAAGGAGGCGCTCAATGAAAAGCTGAC
CAATACAGCCTATGCCCAAAGCGTTAAAAAGTTCTTGTTGTAAAAGCTTT
CTAGACC
BS11514.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13922-PA | 777 | mRpL46-RA | 1..777 | 17..793 | 3885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:26:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL46-RA | 909 | CG13922-RA | 78..854 | 17..793 | 3885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:26:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1777516..1778292 | 17..793 | 3885 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:26:18 has no hits.
BS11514.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:11:33 Download gff for
BS11514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13922-PA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:43:03 Download gff for
BS11514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13922-PA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:11:19 Download gff for
BS11514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL46-RA | 78..854 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:37:37 Download gff for
BS11514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL46-RA | 78..854 | 17..793 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:37:37 Download gff for
BS11514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1777516..1778292 | 17..793 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:11:19 Download gff for
BS11514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1777516..1778292 | 17..793 | 100 | | Plus |
BS11514.complete Sequence
809 bp assembled on 2006-11-01
GenBank Submission: FJ636894
> BS11514.complete
GAAGTTATCAGTCGACATGCTGCGTCGCATTGTCCAAGTGGGTGCCCGGG
AGTTGAGCCGAGCCCAATCGTCAACCGCCAGCGCGGAAAAGTGGGACCTG
TACGCCGGAGTGCTCGTAGAGCGTCTCCCTGTGGTGTCCAAGTCCCTTAA
TCCGCTGGAAAAACAGTTCCAAGACTTGCTATGGCGCGTGGAGTACGAAA
ACAGCCTGAAGTCTGACCATGAACTCAAGCATGAACGTGAGATCGTCCAG
GCGGAGCTCATAAAGCAGGGCAAGATCCAGGTGGACTTGGAGGACGCAGG
ATCCAAGCAGACAGCTCAGGACCTCAAGGACGCCTACGTCGAGGAGCTAA
AAAAGTTCCAGTTGGGCTCCCGCACCACGCCCGATGACCAGGCCAACAGA
ACCACCTCCACGGACCGCTGTCTGGATGACACGCTCTACCTTTTGGTACA
GCAGAAGCTGGGCCAGCAGGAGCACCTCATTCTACCGCAGGGAAAGCGTG
AGGAGGGAGAGTCCATGCGTCAGACTGCAGAAAGAGTGCTCCGCGAGAGT
TGCGGCCAGGAGCTGCAGGTTCTTTTCTACGGCAACGCCCCAGTGGGCTT
CCACAAATACAAGTATCCCAGAAACCAGCGGACGGAGACTGTCGGAGCCA
AGGTCTTCTTCTACAGAGCATCCCTGCGGTCCGGCCAGGTGCCCGAAAAT
CTGACCAAGTTCGAGTGGCTTCCCAAGGAGGCGCTCAATGAAAAGCTGAC
CAATACAGCCTATGCCCAAAGCGTTAAAAAGTTCTTGTTGTAAAAGCTTT
CTAGACCAT
BS11514.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:33:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL46-RA | 777 | CG13922-PA | 1..777 | 17..793 | 3885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:33:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL46-RA | 909 | CG13922-RA | 78..854 | 17..793 | 3885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:33:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1777516..1778292 | 17..793 | 3885 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:33:02 has no hits.
BS11514.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:20 Download gff for
BS11514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL46-RA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:25 Download gff for
BS11514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL46-RA | 76..852 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:10 Download gff for
BS11514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL46-RA | 78..852 | 17..791 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:21 Download gff for
BS11514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL46-RA | 76..852 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:07 Download gff for
BS11514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL46-RA | 78..852 | 17..791 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:07 Download gff for
BS11514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1777516..1778290 | 17..791 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:10 Download gff for
BS11514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1777516..1778290 | 17..791 | 100 | | Plus |
BS11514.pep Sequence
Translation from 16 to 792
> BS11514.pep
MLRRIVQVGARELSRAQSSTASAEKWDLYAGVLVERLPVVSKSLNPLEKQ
FQDLLWRVEYENSLKSDHELKHEREIVQAELIKQGKIQVDLEDAGSKQTA
QDLKDAYVEELKKFQLGSRTTPDDQANRTTSTDRCLDDTLYLLVQQKLGQ
QEHLILPQGKREEGESMRQTAERVLRESCGQELQVLFYGNAPVGFHKYKY
PRNQRTETVGAKVFFYRASLRSGQVPENLTKFEWLPKEALNEKLTNTAYA
QSVKKFLL*
BS11514.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL46-PA | 258 | CG13922-PA | 1..258 | 1..258 | 1314 | 100 | Plus |
