Clone Sequence Records
BS11520.3prime Sequence
878 bp (808 high quality bases) assembled on 2006-05-08
> BS11520.3prime
ATGGTCTAGAAAGCTTTCAAATGGCCAGGGACGGCTTGGTATGGCTCTCC
ACCGGTGTTGCCAGTGGCAGTTGCTCCTTGGATTGTTCGCCAACTGAGTC
CACCTGTTTCACCTCGGCATCCCCGGCACTCAGTTCCTTGGGTGGCTCCT
CTGCATCCTCGATGAGACGATAGGTAATGGGAGCGGGCTGCTTGGCCGGC
AACCAGTCGGGGATGATCTTGTCGTGCAGTCGCCATTTGCCATACTCGTT
CGAAATGTGCTTCTCAAACACCACATATTCCAGCACGTCCTTGGTGATGA
TCTCGCTGCCGTGCATCAGGCGGCCGAAGCGGTCGTAGATGGCTAACATC
TGTTGGCTGTGGAAGCGCACGGTGACTTGAGCGAACTGGTTTTCCTTGGT
GATCACCTCCGTCACGCGGGCATGGACAACGCGTGGTGGTTCCAGCGACT
GTAGAAACTTCCAGCGAATGGTCTTGTCCTTGACGTTGTGCATCATCTCC
GGATAACAGCGTTCGCTGACGAACTCGCGGATCTTGTACTTGTCCTTGGC
AGCCATGTGAGTGTGCGCCTGGATGTAAATATCCTGGGCCTCGGCGCCGA
AATCATCGGAGCTGAAGTTTTCGTCGTAGGAACGAATCTTGCGCACGGCC
ATCAGGCTCTTGGACTTCTTCTCCAGGAACTCCAACTTCTGCTTGGCACC
CGATGTTGAAATGATCGACTTCTTGCCGTCGCCTTCAGGAGGGACATAAG
CCTCGAAGATGCCGCCCGTGCAGCTTATGTGGAAAGGGCGCTCCATCCAG
GGACGGGGCGGCAAGACACCTCGCTCCTTCATCCGGCTGCGCATCTCCTC
CTTGGTGATATCCTCCTGTTTCTCGCGC
BS11520.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6949-PA | 1086 | mRpL45-RA | 225..1086 | 878..17 | 4310 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:06:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL45-RA | 1268 | CG6949-RA | 303..1164 | 878..17 | 4310 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:05:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22618861..22619722 | 878..17 | 4310 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 13:06:02 has no hits.
BS11520.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:11:45 Download gff for
BS11520.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6949-PA | 225..1086 | 17..878 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:43:20 Download gff for
BS11520.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6949-PA | 225..1086 | 17..878 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:42:54 Download gff for
BS11520.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL45-RA | 332..1193 | 17..878 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:25:54 Download gff for
BS11520.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL45-RA | 303..1164 | 17..878 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:25:54 Download gff for
BS11520.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22618861..22619722 | 17..878 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:42:54 Download gff for
BS11520.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18444583..18445444 | 17..878 | 100 | | Minus |
BS11520.5prime Sequence
896 bp (853 high quality bases) assembled on 2006-05-08
> BS11520.5prime
GAAGTTATCAGTCGACATGGAGAAGCTAGCGTCGGCCAAAACGTGTCTTA
AACTGCTGCAGGTTATGCCCGGCGTGCAGCAGGCGGCCCTTCTTCCTGGT
GGTGGCCTGGGCGTGCTCGCTTCTCCTCTTCAGAATCTGATCCAGATGCA
GCAGGTGCGCCACCGACAAACCAAGCACTGGAAGCCCGAGTTCAAGCGCC
TTCGTAAGCTCAAGTTCGTAAAGATGGATCTGCCCAATCTGCGCGAGAAA
CAGGAGGATATCACCAAGGAGGAGATGCGCAGCCGGATGAAGGAGCGAGG
TGTCTTGCCGCCCCGTCCCTGGATGGAGCGCCCTTTCCACATAAGCTGCA
CGGGCGGCATCTTCGAGGCTTATGTCCCTCCTGAAGGCGACGGCAAGAAG
TCGATCATTTCAACATCGGGTGCCAAGCAGAAGTTGGAGTTCCTGGAGAA
GAAGTCCAAGAGCCTGATGGCCGTGCGCAAGATTCGTTCCTACGACGAAA
ACTTCAGCTCCGATGATTTCGGCGCCGAGGCCCAGGATATTTACATCCAG
GCGCACACTCACATGGCTGCCAAGGACAAGTACAAGATCCGCGAGTTCGT
CAGCGAACGCTGTTATCCGGAGATGATGCACAACGTCAAGGACAAGACCA
TTCGCTGGAAGTTTCTACAGTCGCTGGAACCACCACGCGTTGTCCATGCC
CGCGTGACGGAGGTGATCACCAAGGAAAACCAGTTCGCTCAAGTCACCGT
GCGCTTCCACAGCCAACAGATGTTAGCCATCTACGACCGCTTCGGCCGCC
TGATGCACGGCAGCGAGATCATCACCAAGGACGTGCTGGAATATGTGGTG
TTTGAGAAGCACATTTCGAACGAGTATGGCAAATGGCGACTGCACG
BS11520.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6949-PA | 1086 | mRpL45-RA | 1..880 | 17..896 | 4400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:33:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL45-RA | 1268 | CG6949-RA | 79..958 | 17..896 | 4400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:33:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22618679..22619516 | 59..896 | 4190 | 100 | Plus |
| 3R | 32079331 | 3R | 22618570..22618616 | 17..63 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:33:41 has no hits.
BS11520.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:11:46 Download gff for
BS11520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6949-PA | 1..880 | 17..896 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:43:21 Download gff for
BS11520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6949-PA | 1..880 | 17..896 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:40:15 Download gff for
BS11520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL45-RA | 108..987 | 17..896 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:33:13 Download gff for
BS11520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL45-RA | 79..958 | 17..896 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:33:13 Download gff for
BS11520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22618570..22618614 | 17..61 | 100 | -> | Plus |
| 3R | 22618682..22619516 | 62..896 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:40:15 Download gff for
BS11520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18444292..18444336 | 17..61 | 100 | -> | Plus |
| arm_3R | 18444404..18445238 | 62..896 | 100 | | Plus |
BS11520.complete Sequence
1118 bp assembled on 2006-11-01
GenBank Submission: FJ636895
> BS11520.complete
GAAGTTATCAGTCGACATGGAGAAGCTAGCGTCGGCCAAAACGTGTCTTA
AACTGCTGCAGGTTATGCCCGGCGTGCAGCAGGCGGCCCTTCTTCCTGGT
GGTGGCCTGGGCGTGCTCGCTTCTCCTCTTCAGAATCTGATCCAGATGCA
GCAGGTGCGCCACCGACAAACCAAGCACTGGAAGCCCGAGTTCAAGCGCC
TTCGTAAGCTCAAGTTCGTAAAGATGGATCTGCCCAATCTGCGCGAGAAA
CAGGAGGATATCACCAAGGAGGAGATGCGCAGCCGGATGAAGGAGCGAGG
TGTCTTGCCGCCCCGTCCCTGGATGGAGCGCCCTTTCCACATAAGCTGCA
CGGGCGGCATCTTCGAGGCTTATGTCCCTCCTGAAGGCGACGGCAAGAAG
TCGATCATTTCAACATCGGGTGCCAAGCAGAAGTTGGAGTTCCTGGAGAA
GAAGTCCAAGAGCCTGATGGCCGTGCGCAAGATTCGTTCCTACGACGAAA
ACTTCAGCTCCGATGATTTCGGCGCCGAGGCCCAGGATATTTACATCCAG
GCGCACACTCACATGGCTGCCAAGGACAAGTACAAGATCCGCGAGTTCGT
CAGCGAACGCTGTTATCCGGAGATGATGCACAACGTCAAGGACAAGACCA
TTCGCTGGAAGTTTCTACAGTCGCTGGAACCACCACGCGTTGTCCATGCC
CGCGTGACGGAGGTGATCACCAAGGAAAACCAGTTCGCTCAAGTCACCGT
GCGCTTCCACAGCCAACAGATGTTAGCCATCTACGACCGCTTCGGCCGCC
TGATGCACGGCAGCGAGATCATCACCAAGGACGTGCTGGAATATGTGGTG
TTTGAGAAGCACATTTCGAACGAGTATGGCAAATGGCGACTGCACGACAA
GATCATCCCCGACTGGTTGCCGGCCAAGCAGCCCGCTCCCATTACCTATC
GTCTCATCGAGGATGCAGAGGAGCCACCCAAGGAACTGAGTGCCGGGGAT
GCCGAGGTGAAACAGGTGGACTCAGTTGGCGAACAATCCAAGGAGCAACT
GCCACTGGCAACACCGGTGGAGAGCCATACCAAGCCGTCCCTGGCCATTT
GAAAGCTTTCTAGACCAT
BS11520.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:00:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL45-RA | 1086 | CG6949-PA | 1..1086 | 17..1102 | 5430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:00:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL45-RA | 1268 | CG6949-RA | 79..1164 | 17..1102 | 5430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:00:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22618679..22619722 | 59..1102 | 5220 | 100 | Plus |
| 3R | 32079331 | 3R | 22618570..22618616 | 17..63 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:00:15 has no hits.
BS11520.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:21 Download gff for
BS11520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL45-RA | 1..1086 | 17..1102 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:26 Download gff for
BS11520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL45-RA | 88..1173 | 17..1102 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:30 Download gff for
BS11520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL45-RA | 108..1192 | 17..1101 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:22 Download gff for
BS11520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL45-RA | 88..1173 | 17..1102 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:44 Download gff for
BS11520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL45-RA | 79..1163 | 17..1101 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:44 Download gff for
BS11520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22618570..22618614 | 17..61 | 100 | -> | Plus |
| 3R | 22618682..22619721 | 62..1101 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:30 Download gff for
BS11520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18444292..18444336 | 17..61 | 100 | -> | Plus |
| arm_3R | 18444404..18445443 | 62..1101 | 100 | | Plus |
BS11520.pep Sequence
Translation from 16 to 1101
> BS11520.pep
MEKLASAKTCLKLLQVMPGVQQAALLPGGGLGVLASPLQNLIQMQQVRHR
QTKHWKPEFKRLRKLKFVKMDLPNLREKQEDITKEEMRSRMKERGVLPPR
PWMERPFHISCTGGIFEAYVPPEGDGKKSIISTSGAKQKLEFLEKKSKSL
MAVRKIRSYDENFSSDDFGAEAQDIYIQAHTHMAAKDKYKIREFVSERCY
PEMMHNVKDKTIRWKFLQSLEPPRVVHARVTEVITKENQFAQVTVRFHSQ
QMLAIYDRFGRLMHGSEIITKDVLEYVVFEKHISNEYGKWRLHDKIIPDW
LPAKQPAPITYRLIEDAEEPPKELSAGDAEVKQVDSVGEQSKEQLPLATP
VESHTKPSLAI*
BS11520.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL45-PA | 361 | CG6949-PA | 1..361 | 1..361 | 1880 | 100 | Plus |
