Clone Sequence Records
BS11521.3prime Sequence
384 bp (383 high quality bases) assembled on 2006-05-08
> BS11521.3prime
ATGGTCTAGAAAGCTTTTATTGACTTGGGGGGTGGGCGGCGATGTACTCC
AGAGAACGCTGGATGGCCTCTGGAATTGGTGGTGGGGTGGGCAGAGGAGG
GTTGGCAGACACCACCTGGTAACCGTTGGCATCGGCGATATATTGGATGG
ACACTGGCACATTTTCGGGAGATGTCCACGACTGGCTTCCCTTCACCACC
CACTCTTCGCCGTTAAGGTCACCCTTCTGTTGCACATTGACAGAGTTGTC
CAGCTCAACAGCGTAAGCAAAGCCGTCAACATTCACTTGCTGCTCGGCAC
GGAGAACATTGGCATCTTCGTTGGCGAGGGCGACGGCCAACAGGCAGGCG
AAAGCAATGAAGAACTTCATGTCGACTGATAACT
BS11521.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9070-PA | 354 | CG9070-RA | 1..354 | 370..17 | 1770 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:31:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr47Eg-RA | 421 | CG9070-RA | 38..394 | 372..16 | 1785 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:31:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11277984..11278326 | 16..358 | 1715 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:31:29 has no hits.
BS11521.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:11:47 Download gff for
BS11521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9070-PA | 1..354 | 17..370 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:43:22 Download gff for
BS11521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9070-PA | 1..354 | 17..370 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:19:06 Download gff for
BS11521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr47Eg-RA | 32..394 | 16..378 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:58 Download gff for
BS11521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr47Eg-RA | 32..394 | 16..378 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:58 Download gff for
BS11521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11277984..11278326 | 16..358 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:19:06 Download gff for
BS11521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7165489..7165831 | 16..358 | 100 | <- | Plus |
BS11521.5prime Sequence
384 bp (383 high quality bases) assembled on 2006-05-08
> BS11521.5prime
GAAGTTATCAGTCGACATGAAGTTCTTCATTGCTTTCGCCTGCCTGTTGG
CCGTCGCCCTCGCCAACGAAGATGCCAATGTTCTCCGTGCCGAGCAGCAA
GTGAATGTTGACGGCTTTGCTTACGCTGTTGAGCTGGACAACTCTGTCAA
TGTGCAACAGAAGGGTGACCTTAACGGCGAAGAGTGGGTGGTGAAGGGAA
GCCAGTCGTGGACATCTCCCGAAAATGTGCCAGTGTCCATCCAATATATC
GCCGATGCCAACGGTTACCAGGTGGTGTCTGCCAACCCTCCTCTGCCCAC
CCCACCACCAATTCCAGAGGCCATCCAGCGTTCTCTGGAGTACATCGCCG
CCCACCCCCCAAGTCAATAAAAGCTTTCTAGACC
BS11521.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9070-PA | 354 | CG9070-RA | 1..354 | 17..370 | 1770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:44:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr47Eg-RA | 421 | CG9070-RA | 38..394 | 15..371 | 1785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:43:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11277984..11278326 | 371..29 | 1715 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:43:59 has no hits.
BS11521.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:11:48 Download gff for
BS11521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9070-PA | 1..354 | 17..370 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:43:24 Download gff for
BS11521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9070-PA | 1..354 | 17..370 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:42:45 Download gff for
BS11521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr47Eg-RA | 32..394 | 9..371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:17 Download gff for
BS11521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr47Eg-RA | 32..394 | 9..371 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:17 Download gff for
BS11521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11277984..11278326 | 29..371 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:42:45 Download gff for
BS11521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7165489..7165831 | 29..371 | 100 | <- | Minus |
BS11521.complete Sequence
386 bp assembled on 2006-11-01
GenBank Submission: FJ636896
> BS11521.complete
GAAGTTATCAGTCGACATGAAGTTCTTCATTGCTTTCGCCTGCCTGTTGG
CCGTCGCCCTCGCCAACGAAGATGCCAATGTTCTCCGTGCCGAGCAGCAA
GTGAATGTTGACGGCTTTGCTTACGCTGTTGAGCTGGACAACTCTGTCAA
TGTGCAACAGAAGGGTGACCTTAACGGCGAAGAGTGGGTGGTGAAGGGAA
GCCAGTCGTGGACATCTCCCGAAAATGTGCCAGTGTCCATCCAATATATC
GCCGATGCCAACGGTTACCAGGTGGTGTCTGCCAACCCTCCTCTGCCCAC
CCCACCACCAATTCCAGAGGCCATCCAGCGTTCTCTGGAGTACATCGCCG
CCCACCCCCCAAGTCAATAAAAGCTTTCTAGACCAT
BS11521.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:29:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr47Eg-RA | 354 | CG9070-PA | 1..354 | 17..370 | 1770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr47Eg-RA | 421 | CG9070-RA | 38..394 | 15..371 | 1785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11277984..11278326 | 371..29 | 1715 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:29:47 has no hits.
BS11521.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:22 Download gff for
BS11521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr47Eg-RA | 1..354 | 17..370 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:33 Download gff for
BS11521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr47Eg-RA | 28..390 | 9..371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:42 Download gff for
BS11521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr47Eg-RA | 40..391 | 17..368 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:22 Download gff for
BS11521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr47Eg-RA | 28..390 | 9..371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:56 Download gff for
BS11521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr47Eg-RA | 40..391 | 17..368 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:56 Download gff for
BS11521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11277987..11278326 | 29..368 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:42 Download gff for
BS11521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7165492..7165831 | 29..368 | 100 | <- | Minus |
BS11521.pep Sequence
Translation from 16 to 369
> BS11521.pep
MKFFIAFACLLAVALANEDANVLRAEQQVNVDGFAYAVELDNSVNVQQKG
DLNGEEWVVKGSQSWTSPENVPVSIQYIADANGYQVVSANPPLPTPPPIP
EAIQRSLEYIAAHPPSQ*
BS11521.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:45:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr47Eg-PA | 117 | CG9070-PA | 1..117 | 1..117 | 607 | 100 | Plus |
Cpr78Cc-PA | 119 | CG7658-PA | 7..117 | 9..115 | 225 | 44.4 | Plus |
Cpr49Aa-PB | 144 | CG30045-PB | 1..130 | 1..115 | 216 | 38.6 | Plus |
Lcp4-PB | 112 | CG2044-PB | 2..112 | 3..117 | 205 | 42.2 | Plus |
Lcp4-PA | 112 | CG2044-PA | 2..112 | 3..117 | 205 | 42.2 | Plus |