Clone BS11521 Report

Search the DGRC for BS11521

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:115
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptCpr47Eg-RA
Protein status:BS11521.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11521.3prime Sequence

384 bp (383 high quality bases) assembled on 2006-05-08

> BS11521.3prime
ATGGTCTAGAAAGCTTTTATTGACTTGGGGGGTGGGCGGCGATGTACTCC
AGAGAACGCTGGATGGCCTCTGGAATTGGTGGTGGGGTGGGCAGAGGAGG
GTTGGCAGACACCACCTGGTAACCGTTGGCATCGGCGATATATTGGATGG
ACACTGGCACATTTTCGGGAGATGTCCACGACTGGCTTCCCTTCACCACC
CACTCTTCGCCGTTAAGGTCACCCTTCTGTTGCACATTGACAGAGTTGTC
CAGCTCAACAGCGTAAGCAAAGCCGTCAACATTCACTTGCTGCTCGGCAC
GGAGAACATTGGCATCTTCGTTGGCGAGGGCGACGGCCAACAGGCAGGCG
AAAGCAATGAAGAACTTCATGTCGACTGATAACT

BS11521.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG9070-PA 354 CG9070-RA 1..354 370..17 1770 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:31:31
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr47Eg-RA 421 CG9070-RA 38..394 372..16 1785 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:31:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11277984..11278326 16..358 1715 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:31:29 has no hits.

BS11521.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:11:47 Download gff for BS11521.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9070-PA 1..354 17..370 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:43:22 Download gff for BS11521.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9070-PA 1..354 17..370 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:19:06 Download gff for BS11521.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr47Eg-RA 32..394 16..378 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:58 Download gff for BS11521.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr47Eg-RA 32..394 16..378 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:58 Download gff for BS11521.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11277984..11278326 16..358 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:19:06 Download gff for BS11521.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7165489..7165831 16..358 100 <- Plus

BS11521.5prime Sequence

384 bp (383 high quality bases) assembled on 2006-05-08

> BS11521.5prime
GAAGTTATCAGTCGACATGAAGTTCTTCATTGCTTTCGCCTGCCTGTTGG
CCGTCGCCCTCGCCAACGAAGATGCCAATGTTCTCCGTGCCGAGCAGCAA
GTGAATGTTGACGGCTTTGCTTACGCTGTTGAGCTGGACAACTCTGTCAA
TGTGCAACAGAAGGGTGACCTTAACGGCGAAGAGTGGGTGGTGAAGGGAA
GCCAGTCGTGGACATCTCCCGAAAATGTGCCAGTGTCCATCCAATATATC
GCCGATGCCAACGGTTACCAGGTGGTGTCTGCCAACCCTCCTCTGCCCAC
CCCACCACCAATTCCAGAGGCCATCCAGCGTTCTCTGGAGTACATCGCCG
CCCACCCCCCAAGTCAATAAAAGCTTTCTAGACC

BS11521.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG9070-PA 354 CG9070-RA 1..354 17..370 1770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:44:03
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr47Eg-RA 421 CG9070-RA 38..394 15..371 1785 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:43:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11277984..11278326 371..29 1715 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:43:59 has no hits.

BS11521.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:11:48 Download gff for BS11521.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9070-PA 1..354 17..370 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:43:24 Download gff for BS11521.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9070-PA 1..354 17..370 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:42:45 Download gff for BS11521.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr47Eg-RA 32..394 9..371 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:17 Download gff for BS11521.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr47Eg-RA 32..394 9..371 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:17 Download gff for BS11521.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11277984..11278326 29..371 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:42:45 Download gff for BS11521.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7165489..7165831 29..371 100 <- Minus

BS11521.complete Sequence

386 bp assembled on 2006-11-01

GenBank Submission: FJ636896

> BS11521.complete
GAAGTTATCAGTCGACATGAAGTTCTTCATTGCTTTCGCCTGCCTGTTGG
CCGTCGCCCTCGCCAACGAAGATGCCAATGTTCTCCGTGCCGAGCAGCAA
GTGAATGTTGACGGCTTTGCTTACGCTGTTGAGCTGGACAACTCTGTCAA
TGTGCAACAGAAGGGTGACCTTAACGGCGAAGAGTGGGTGGTGAAGGGAA
GCCAGTCGTGGACATCTCCCGAAAATGTGCCAGTGTCCATCCAATATATC
GCCGATGCCAACGGTTACCAGGTGGTGTCTGCCAACCCTCCTCTGCCCAC
CCCACCACCAATTCCAGAGGCCATCCAGCGTTCTCTGGAGTACATCGCCG
CCCACCCCCCAAGTCAATAAAAGCTTTCTAGACCAT

BS11521.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:29:48
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr47Eg-RA 354 CG9070-PA 1..354 17..370 1770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:50
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr47Eg-RA 421 CG9070-RA 38..394 15..371 1785 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11277984..11278326 371..29 1715 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:29:47 has no hits.

BS11521.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:22 Download gff for BS11521.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr47Eg-RA 1..354 17..370 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:33 Download gff for BS11521.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr47Eg-RA 28..390 9..371 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:42 Download gff for BS11521.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr47Eg-RA 40..391 17..368 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:22 Download gff for BS11521.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr47Eg-RA 28..390 9..371 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:56 Download gff for BS11521.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr47Eg-RA 40..391 17..368 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:56 Download gff for BS11521.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11277987..11278326 29..368 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:42 Download gff for BS11521.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7165492..7165831 29..368 100 <- Minus

BS11521.pep Sequence

Translation from 16 to 369

> BS11521.pep
MKFFIAFACLLAVALANEDANVLRAEQQVNVDGFAYAVELDNSVNVQQKG
DLNGEEWVVKGSQSWTSPENVPVSIQYIADANGYQVVSANPPLPTPPPIP
EAIQRSLEYIAAHPPSQ*

BS11521.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:45:47
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr47Eg-PA 117 CG9070-PA 1..117 1..117 607 100 Plus
Cpr78Cc-PA 119 CG7658-PA 7..117 9..115 225 44.4 Plus
Cpr49Aa-PB 144 CG30045-PB 1..130 1..115 216 38.6 Plus
Lcp4-PB 112 CG2044-PB 2..112 3..117 205 42.2 Plus
Lcp4-PA 112 CG2044-PA 2..112 3..117 205 42.2 Plus