Clone BS11526 Report

Search the DGRC for BS11526

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:115
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptCG3408-RA
Protein status:BS11526.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11526.3prime Sequence

821 bp (717 high quality bases) assembled on 2006-05-08

> BS11526.3prime
ATGGTCTAGAAAGCTTTCAGTGTTCCTCCGGTGGTGTTCGGAATTCCGAG
ATCCAGTCGGTAACACGCAGCCGAAAGATCTCCGTTTTGGTCAGGATCCA
ATCGCGATACTGGTGTGGTATATACTCCACCAGCTTGTCGGCGATGTCCG
GATTCTTGAACATGATCATGTAAATGATTAACAAGTTGATGATAAAGAGA
ACCAGAAAGCTGACCAGCGACGATAGGGCAGCTCTCGACAGTAGATTCAA
CCAGGAATCGCCTTTCGAGTTCTTTTTCTTTTGATTGTTCTTTTGAGTTG
ATTTGGATCCCAGTGCGATTGCTCCTGATCCTCCTGATCCCACTGCATTT
ACTGGTTTGATTGTCAGCTCATTGTCTCCCCCACCGGCGAGTTTTTTAGC
TTTGGCTTTCTTATTATTCGGTTTCGTCGACTTCTTTCCACCAGCTGCGC
CGCCATTCGTTTGAACGGCGTTGGCACTGGAATCCCCGGCTCCGGCCATT
TTCTGGCTCTCTTGGGCGGCCAAACGTTCGCGTTCAATGAATTCCGGCTT
GTAGTTGGCGCAGATGCTGACTGTATTCTTGGCCGCCTGCTGGCAGTCCT
TTTGCGTGGAGCAGCAGCCCACAATCTTCTCCCAGGCGGGCGTCAGTGGA
TTCCCCTTCAGGTCTAAGTACCGCAAACGACGCAGCTGACCGAAGCTAAT
GGGCAGGTGCTCCAAGCAATTGTTGTACAAGTCCAAGTGGCGCAACTGCT
CCAGCTGGCCAAAGTCCTCGGGCAGGAATTTTATTTGGTTCTTGCTTAGG
TCCAGGCGCACCAAGCGTGTG

BS11526.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG3408-PA 996 CG3408-RA 192..996 821..17 4025 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:46:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3408-RB 1876 CG3408-RB 311..1115 821..17 4025 100 Minus
CG3408-RA 1888 CG3408-RA 323..1127 821..17 4025 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:46:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9507579..9508133 17..571 2775 100 Plus
3L 28110227 3L 9508218..9508469 570..821 1260 100 Plus
Blast to na_te.dros performed on 2015-02-01 04:46:18 has no hits.

BS11526.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:11:56 Download gff for BS11526.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3408-PA 192..996 17..821 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:43:35 Download gff for BS11526.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3408-PA 192..996 17..821 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:08:17 Download gff for BS11526.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3408-RA 323..1132 11..821 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:49:24 Download gff for BS11526.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3408-RA 323..1132 11..821 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:49:24 Download gff for BS11526.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9507574..9508133 11..571 99 <- Plus
3L 9508220..9508469 572..821 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:08:17 Download gff for BS11526.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9500674..9501233 11..571 99 <- Plus
arm_3L 9501320..9501569 572..821 100   Plus

BS11526.5prime Sequence

878 bp (774 high quality bases) assembled on 2006-05-08

> BS11526.5prime
GAAGTTATCAGTCGACATGCCGAAACCCGGTGACAAGGCGAAGGTGAAGG
TGAACGTCAAGGAGCGGGTGGTGGACGAAACCTGCGACTTGAGTCTCTCC
GAACTGAGCGAAATACCGGTGCGGGAGATCGCTTCGTTCAAGCGCGTCAC
CGTTTTGGATCTCTCCAGCAATCGTCTGGTCAACTTGGGAAAAAACTTTT
CGATTCTCACACGCTTGGTGCGCCTGGACCTAAGCAAGAACCAAATAAAA
TTCCTGCCCGAGGACTTTGGCCAGCTGGAGCAGTTGCGCCACTTGGACTT
GTACAACAATTGCTTGGAGCACCTGCCCATTAGCTTCGGTCAGCTGCGTC
GTTTGCGGTACTTAGACCTGAAGGGGAATCCACTGACGCCCGCCTGGGAG
AAGATTGTGGGCTGCTGCTCCACGCAAAAGGACTGCCAGCAGGCGGCCAA
GAATACAGTCAGCATCTGCGCCAACTACAAGCCGGAATTCATTGAACGCG
AACGTTTGGCCGCCCAAGAGAGCCAGAAAATGGCCGGAGCCGGGGATTCC
AGTGCCAACGCCGTTCAAACGAATGGCGGCGCAGCTGGTGGAAAGAAGTC
GACGAAACCGAATAATAAGAAAGCCAAAGCTAAAAAACTCGCCGGTGGGG
GAGACAATGAGCTGACAATCAAACCAGTAAATGCAGTGGGATCAGGAGGA
TCAGGAGCAATCGCACTGGGATCCAAATCAACTCAAAAGAACAATCAAAA
GAAAAAGAACTCGAAAGGCGATTCCTGGTTGAATCTACTGTCGAGAGCTG
CCCTATCGTCGCTGGTCAGCTTTCTGGTTCTCTTTATCATCAACTTGTTA
ATCATTTACATGATCATGTTCAAGAATC

BS11526.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG3408-PA 996 CG3408-RA 1..862 17..878 4310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:42:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG3408-RA 1888 CG3408-RA 128..993 13..878 4315 99.9 Plus
CG3408-RB 1876 CG3408-RB 128..981 13..878 4125 98.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:42:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9507713..9508133 878..458 2105 100 Minus
3L 28110227 3L 9508218..9508486 459..191 1345 100 Minus
3L 28110227 3L 9509338..9509456 131..13 580 99.2 Minus
3L 28110227 3L 9508565..9508624 190..131 300 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:42:21 has no hits.

BS11526.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:11:57 Download gff for BS11526.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3408-PA 1..862 17..878 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:43:37 Download gff for BS11526.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3408-PA 1..862 17..878 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:42:43 Download gff for BS11526.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3408-RA 119..993 2..878 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:06 Download gff for BS11526.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3408-RA 119..993 2..878 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:06 Download gff for BS11526.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9507713..9508133 458..878 100 <- Minus
3L 9508220..9508486 191..457 100 <- Minus
3L 9508565..9508624 131..190 100 <- Minus
3L 9509339..9509465 2..130 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:42:43 Download gff for BS11526.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9502439..9502565 2..130 96   Minus
arm_3L 9500813..9501233 458..878 100 <- Minus
arm_3L 9501320..9501586 191..457 100 <- Minus
arm_3L 9501665..9501724 131..190 100 <- Minus

BS11526.complete Sequence

1028 bp assembled on 2006-11-01

GenBank Submission: FJ636897

> BS11526.complete
GAAGTTATCAGTCGACATGCCGAAACCCGGTGACAAGGCGAAGGTGAAGG
TGAACGTCAAGGAGCGGGTGGTGGACGAAACCTGCGACTTGAGTCTCTCC
GAACTGAGCGAAATACCGGTGCGGGAGATCGCTTCGTTCAAGCGCGTCAC
CGTTTTGGATCTCTCCAGCAATCGTCTGGTCAACTTGGGAAAAAACTTTT
CGATTCTCACACGCTTGGTGCGCCTGGACCTAAGCAAGAACCAAATAAAA
TTCCTGCCCGAGGACTTTGGCCAGCTGGAGCAGTTGCGCCACTTGGACTT
GTACAACAATTGCTTGGAGCACCTGCCCATTAGCTTCGGTCAGCTGCGTC
GTTTGCGGTACTTAGACCTGAAGGGGAATCCACTGACGCCCGCCTGGGAG
AAGATTGTGGGCTGCTGCTCCACGCAAAAGGACTGCCAGCAGGCGGCCAA
GAATACAGTCAGCATCTGCGCCAACTACAAGCCGGAATTCATTGAACGCG
AACGTTTGGCCGCCCAAGAGAGCCAGAAAATGGCCGGAGCCGGGGATTCC
AGTGCCAACGCCGTTCAAACGAATGGCGGCGCAGCTGGTGGAAAGAAGTC
GACGAAACCGAATAATAAGAAAGCCAAAGCTAAAAAACTCGCCGGTGGGG
GAGACAATGAGCTGACAATCAAACCAGTAAATGCAGTGGGATCAGGAGGA
TCAGGAGCAATCGCACTGGGATCCAAATCAACTCAAAAGAACAATCAAAA
GAAAAAGAACTCGAAAGGCGATTCCTGGTTGAATCTACTGTCGAGAGCTG
CCCTATCGTCGCTGGTCAGCTTTCTGGTTCTCTTTATCATCAACTTGTTA
ATCATTTACATGATCATGTTCAAGAATCCGGACATCGCCGACAAGCTGGT
GGAGTATATACCACACCAGTATCGCGATTGGATCCTGACCAAAACGGAGA
TCTTTCGGCTGCGTGTTACCGACTGGATCTCGGAATTCCGAACACCACCG
GAGGAACACTGAAAGCTTTCTAGACCAT

BS11526.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:16:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG3408-RA 996 CG3408-PA 1..996 17..1012 4980 100 Plus
CG3408-RB 984 CG3408-PB 1..984 17..1012 4765 98.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:16:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG3408-RA 1888 CG3408-RA 128..1127 13..1012 4985 99.9 Plus
CG3408-RB 1876 CG3408-RB 128..1115 13..1012 4770 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:16:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9507579..9508133 1012..458 2775 100 Minus
3L 28110227 3L 9508218..9508486 459..191 1345 100 Minus
3L 28110227 3L 9509338..9509456 131..13 580 99.2 Minus
3L 28110227 3L 9508565..9508624 190..131 300 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:16:22 has no hits.

BS11526.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:03 Download gff for BS11526.complete
Subject Subject Range Query Range Percent Splice Strand
CG3408-RA 1..996 17..1012 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:14 Download gff for BS11526.complete
Subject Subject Range Query Range Percent Splice Strand
CG3408-RA 116..1129 2..1018 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:37 Download gff for BS11526.complete
Subject Subject Range Query Range Percent Splice Strand
CG3408-RA 132..1126 17..1011 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:03 Download gff for BS11526.complete
Subject Subject Range Query Range Percent Splice Strand
CG3408-RA 116..1129 2..1018 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:07:08 Download gff for BS11526.complete
Subject Subject Range Query Range Percent Splice Strand
CG3408-RA 132..1126 17..1011 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:07:08 Download gff for BS11526.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9508565..9508624 131..190 100 <- Minus
3L 9509339..9509452 17..130 100   Minus
3L 9507580..9508133 458..1011 100 <- Minus
3L 9508220..9508486 191..457 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:37 Download gff for BS11526.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9501665..9501724 131..190 100 <- Minus
arm_3L 9502439..9502552 17..130 100   Minus
arm_3L 9500680..9501233 458..1011 100 <- Minus
arm_3L 9501320..9501586 191..457 100 <- Minus

BS11526.pep Sequence

Translation from 16 to 1011

> BS11526.pep
MPKPGDKAKVKVNVKERVVDETCDLSLSELSEIPVREIASFKRVTVLDLS
SNRLVNLGKNFSILTRLVRLDLSKNQIKFLPEDFGQLEQLRHLDLYNNCL
EHLPISFGQLRRLRYLDLKGNPLTPAWEKIVGCCSTQKDCQQAAKNTVSI
CANYKPEFIERERLAAQESQKMAGAGDSSANAVQTNGGAAGGKKSTKPNN
KKAKAKKLAGGGDNELTIKPVNAVGSGGSGAIALGSKSTQKNNQKKKNSK
GDSWLNLLSRAALSSLVSFLVLFIINLLIIYMIMFKNPDIADKLVEYIPH
QYRDWILTKTEIFRLRVTDWISEFRTPPEEH*

BS11526.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG3408-PA 331 CG3408-PA 1..331 1..331 1698 100 Plus
CG3408-PB 327 CG3408-PB 1..327 1..331 1665 98.8 Plus
CG3494-PB 240 CG3494-PB 42..141 25..121 163 39 Plus
CG3494-PA 240 CG3494-PA 42..141 25..121 163 39 Plus
twin-PB 545 CG31137-PB 51..133 41..123 163 45.8 Plus