Clone Sequence Records
BS11526.3prime Sequence
821 bp (717 high quality bases) assembled on 2006-05-08
> BS11526.3prime
ATGGTCTAGAAAGCTTTCAGTGTTCCTCCGGTGGTGTTCGGAATTCCGAG
ATCCAGTCGGTAACACGCAGCCGAAAGATCTCCGTTTTGGTCAGGATCCA
ATCGCGATACTGGTGTGGTATATACTCCACCAGCTTGTCGGCGATGTCCG
GATTCTTGAACATGATCATGTAAATGATTAACAAGTTGATGATAAAGAGA
ACCAGAAAGCTGACCAGCGACGATAGGGCAGCTCTCGACAGTAGATTCAA
CCAGGAATCGCCTTTCGAGTTCTTTTTCTTTTGATTGTTCTTTTGAGTTG
ATTTGGATCCCAGTGCGATTGCTCCTGATCCTCCTGATCCCACTGCATTT
ACTGGTTTGATTGTCAGCTCATTGTCTCCCCCACCGGCGAGTTTTTTAGC
TTTGGCTTTCTTATTATTCGGTTTCGTCGACTTCTTTCCACCAGCTGCGC
CGCCATTCGTTTGAACGGCGTTGGCACTGGAATCCCCGGCTCCGGCCATT
TTCTGGCTCTCTTGGGCGGCCAAACGTTCGCGTTCAATGAATTCCGGCTT
GTAGTTGGCGCAGATGCTGACTGTATTCTTGGCCGCCTGCTGGCAGTCCT
TTTGCGTGGAGCAGCAGCCCACAATCTTCTCCCAGGCGGGCGTCAGTGGA
TTCCCCTTCAGGTCTAAGTACCGCAAACGACGCAGCTGACCGAAGCTAAT
GGGCAGGTGCTCCAAGCAATTGTTGTACAAGTCCAAGTGGCGCAACTGCT
CCAGCTGGCCAAAGTCCTCGGGCAGGAATTTTATTTGGTTCTTGCTTAGG
TCCAGGCGCACCAAGCGTGTG
BS11526.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3408-PA | 996 | CG3408-RA | 192..996 | 821..17 | 4025 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:46:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3408-RB | 1876 | CG3408-RB | 311..1115 | 821..17 | 4025 | 100 | Minus |
CG3408-RA | 1888 | CG3408-RA | 323..1127 | 821..17 | 4025 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:46:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9507579..9508133 | 17..571 | 2775 | 100 | Plus |
3L | 28110227 | 3L | 9508218..9508469 | 570..821 | 1260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 04:46:18 has no hits.
BS11526.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:11:56 Download gff for
BS11526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3408-PA | 192..996 | 17..821 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:43:35 Download gff for
BS11526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3408-PA | 192..996 | 17..821 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:08:17 Download gff for
BS11526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3408-RA | 323..1132 | 11..821 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:49:24 Download gff for
BS11526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3408-RA | 323..1132 | 11..821 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:49:24 Download gff for
BS11526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9507574..9508133 | 11..571 | 99 | <- | Plus |
3L | 9508220..9508469 | 572..821 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:08:17 Download gff for
BS11526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9500674..9501233 | 11..571 | 99 | <- | Plus |
arm_3L | 9501320..9501569 | 572..821 | 100 | | Plus |
BS11526.5prime Sequence
878 bp (774 high quality bases) assembled on 2006-05-08
> BS11526.5prime
GAAGTTATCAGTCGACATGCCGAAACCCGGTGACAAGGCGAAGGTGAAGG
TGAACGTCAAGGAGCGGGTGGTGGACGAAACCTGCGACTTGAGTCTCTCC
GAACTGAGCGAAATACCGGTGCGGGAGATCGCTTCGTTCAAGCGCGTCAC
CGTTTTGGATCTCTCCAGCAATCGTCTGGTCAACTTGGGAAAAAACTTTT
CGATTCTCACACGCTTGGTGCGCCTGGACCTAAGCAAGAACCAAATAAAA
TTCCTGCCCGAGGACTTTGGCCAGCTGGAGCAGTTGCGCCACTTGGACTT
GTACAACAATTGCTTGGAGCACCTGCCCATTAGCTTCGGTCAGCTGCGTC
GTTTGCGGTACTTAGACCTGAAGGGGAATCCACTGACGCCCGCCTGGGAG
AAGATTGTGGGCTGCTGCTCCACGCAAAAGGACTGCCAGCAGGCGGCCAA
GAATACAGTCAGCATCTGCGCCAACTACAAGCCGGAATTCATTGAACGCG
AACGTTTGGCCGCCCAAGAGAGCCAGAAAATGGCCGGAGCCGGGGATTCC
AGTGCCAACGCCGTTCAAACGAATGGCGGCGCAGCTGGTGGAAAGAAGTC
GACGAAACCGAATAATAAGAAAGCCAAAGCTAAAAAACTCGCCGGTGGGG
GAGACAATGAGCTGACAATCAAACCAGTAAATGCAGTGGGATCAGGAGGA
TCAGGAGCAATCGCACTGGGATCCAAATCAACTCAAAAGAACAATCAAAA
GAAAAAGAACTCGAAAGGCGATTCCTGGTTGAATCTACTGTCGAGAGCTG
CCCTATCGTCGCTGGTCAGCTTTCTGGTTCTCTTTATCATCAACTTGTTA
ATCATTTACATGATCATGTTCAAGAATC
BS11526.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3408-PA | 996 | CG3408-RA | 1..862 | 17..878 | 4310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:42:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3408-RA | 1888 | CG3408-RA | 128..993 | 13..878 | 4315 | 99.9 | Plus |
CG3408-RB | 1876 | CG3408-RB | 128..981 | 13..878 | 4125 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:42:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9507713..9508133 | 878..458 | 2105 | 100 | Minus |
3L | 28110227 | 3L | 9508218..9508486 | 459..191 | 1345 | 100 | Minus |
3L | 28110227 | 3L | 9509338..9509456 | 131..13 | 580 | 99.2 | Minus |
3L | 28110227 | 3L | 9508565..9508624 | 190..131 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:42:21 has no hits.
BS11526.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:11:57 Download gff for
BS11526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3408-PA | 1..862 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:43:37 Download gff for
BS11526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3408-PA | 1..862 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:42:43 Download gff for
BS11526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3408-RA | 119..993 | 2..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:06 Download gff for
BS11526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3408-RA | 119..993 | 2..878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:06 Download gff for
BS11526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9507713..9508133 | 458..878 | 100 | <- | Minus |
3L | 9508220..9508486 | 191..457 | 100 | <- | Minus |
3L | 9508565..9508624 | 131..190 | 100 | <- | Minus |
3L | 9509339..9509465 | 2..130 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:42:43 Download gff for
BS11526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9502439..9502565 | 2..130 | 96 | | Minus |
arm_3L | 9500813..9501233 | 458..878 | 100 | <- | Minus |
arm_3L | 9501320..9501586 | 191..457 | 100 | <- | Minus |
arm_3L | 9501665..9501724 | 131..190 | 100 | <- | Minus |
BS11526.complete Sequence
1028 bp assembled on 2006-11-01
GenBank Submission: FJ636897
> BS11526.complete
GAAGTTATCAGTCGACATGCCGAAACCCGGTGACAAGGCGAAGGTGAAGG
TGAACGTCAAGGAGCGGGTGGTGGACGAAACCTGCGACTTGAGTCTCTCC
GAACTGAGCGAAATACCGGTGCGGGAGATCGCTTCGTTCAAGCGCGTCAC
CGTTTTGGATCTCTCCAGCAATCGTCTGGTCAACTTGGGAAAAAACTTTT
CGATTCTCACACGCTTGGTGCGCCTGGACCTAAGCAAGAACCAAATAAAA
TTCCTGCCCGAGGACTTTGGCCAGCTGGAGCAGTTGCGCCACTTGGACTT
GTACAACAATTGCTTGGAGCACCTGCCCATTAGCTTCGGTCAGCTGCGTC
GTTTGCGGTACTTAGACCTGAAGGGGAATCCACTGACGCCCGCCTGGGAG
AAGATTGTGGGCTGCTGCTCCACGCAAAAGGACTGCCAGCAGGCGGCCAA
GAATACAGTCAGCATCTGCGCCAACTACAAGCCGGAATTCATTGAACGCG
AACGTTTGGCCGCCCAAGAGAGCCAGAAAATGGCCGGAGCCGGGGATTCC
AGTGCCAACGCCGTTCAAACGAATGGCGGCGCAGCTGGTGGAAAGAAGTC
GACGAAACCGAATAATAAGAAAGCCAAAGCTAAAAAACTCGCCGGTGGGG
GAGACAATGAGCTGACAATCAAACCAGTAAATGCAGTGGGATCAGGAGGA
TCAGGAGCAATCGCACTGGGATCCAAATCAACTCAAAAGAACAATCAAAA
GAAAAAGAACTCGAAAGGCGATTCCTGGTTGAATCTACTGTCGAGAGCTG
CCCTATCGTCGCTGGTCAGCTTTCTGGTTCTCTTTATCATCAACTTGTTA
ATCATTTACATGATCATGTTCAAGAATCCGGACATCGCCGACAAGCTGGT
GGAGTATATACCACACCAGTATCGCGATTGGATCCTGACCAAAACGGAGA
TCTTTCGGCTGCGTGTTACCGACTGGATCTCGGAATTCCGAACACCACCG
GAGGAACACTGAAAGCTTTCTAGACCAT
BS11526.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:16:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3408-RA | 996 | CG3408-PA | 1..996 | 17..1012 | 4980 | 100 | Plus |
CG3408-RB | 984 | CG3408-PB | 1..984 | 17..1012 | 4765 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:16:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3408-RA | 1888 | CG3408-RA | 128..1127 | 13..1012 | 4985 | 99.9 | Plus |
CG3408-RB | 1876 | CG3408-RB | 128..1115 | 13..1012 | 4770 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:16:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9507579..9508133 | 1012..458 | 2775 | 100 | Minus |
3L | 28110227 | 3L | 9508218..9508486 | 459..191 | 1345 | 100 | Minus |
3L | 28110227 | 3L | 9509338..9509456 | 131..13 | 580 | 99.2 | Minus |
3L | 28110227 | 3L | 9508565..9508624 | 190..131 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:16:22 has no hits.
BS11526.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:03 Download gff for
BS11526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3408-RA | 1..996 | 17..1012 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:14 Download gff for
BS11526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3408-RA | 116..1129 | 2..1018 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:37 Download gff for
BS11526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3408-RA | 132..1126 | 17..1011 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:03 Download gff for
BS11526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3408-RA | 116..1129 | 2..1018 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:07:08 Download gff for
BS11526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3408-RA | 132..1126 | 17..1011 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:07:08 Download gff for
BS11526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9508565..9508624 | 131..190 | 100 | <- | Minus |
3L | 9509339..9509452 | 17..130 | 100 | | Minus |
3L | 9507580..9508133 | 458..1011 | 100 | <- | Minus |
3L | 9508220..9508486 | 191..457 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:37 Download gff for
BS11526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9501665..9501724 | 131..190 | 100 | <- | Minus |
arm_3L | 9502439..9502552 | 17..130 | 100 | | Minus |
arm_3L | 9500680..9501233 | 458..1011 | 100 | <- | Minus |
arm_3L | 9501320..9501586 | 191..457 | 100 | <- | Minus |
BS11526.pep Sequence
Translation from 16 to 1011
> BS11526.pep
MPKPGDKAKVKVNVKERVVDETCDLSLSELSEIPVREIASFKRVTVLDLS
SNRLVNLGKNFSILTRLVRLDLSKNQIKFLPEDFGQLEQLRHLDLYNNCL
EHLPISFGQLRRLRYLDLKGNPLTPAWEKIVGCCSTQKDCQQAAKNTVSI
CANYKPEFIERERLAAQESQKMAGAGDSSANAVQTNGGAAGGKKSTKPNN
KKAKAKKLAGGGDNELTIKPVNAVGSGGSGAIALGSKSTQKNNQKKKNSK
GDSWLNLLSRAALSSLVSFLVLFIINLLIIYMIMFKNPDIADKLVEYIPH
QYRDWILTKTEIFRLRVTDWISEFRTPPEEH*
BS11526.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3408-PA | 331 | CG3408-PA | 1..331 | 1..331 | 1698 | 100 | Plus |
CG3408-PB | 327 | CG3408-PB | 1..327 | 1..331 | 1665 | 98.8 | Plus |
CG3494-PB | 240 | CG3494-PB | 42..141 | 25..121 | 163 | 39 | Plus |
CG3494-PA | 240 | CG3494-PA | 42..141 | 25..121 | 163 | 39 | Plus |
twin-PB | 545 | CG31137-PB | 51..133 | 41..123 | 163 | 45.8 | Plus |