Clone BS11530 Report

Search the DGRC for BS11530

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:115
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptCG15554-RA
Protein status:BS11530.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11530.3prime Sequence

474 bp (473 high quality bases) assembled on 2006-05-08

> BS11530.3prime
ATGGTCTAGAAAGCTTTCAGCGCTTTATCACCAGCAACCGCAGCGGTATG
TAAGAGCTTCCGGGTACCACATCCTTGCCCTCGGGCAGGAACTTGTGCGC
GTAGTCCTTCGGAGTGGGCGTGTTGGGCGGCAGGGCGTAATCGAGGACGT
TATCCGAGGCCGCGCCGGAAATGGCGGGCGTGCGAACCACCCACAATTGC
ATCGCCAGCGGTTTTCTGTCCGCCGGCACTTCCGATTTCCCCAGCTGCAC
ATTGGCGCGGCGGGAAAAGTGGGCCTGCTCCGCCAGCTGGAAGCGCTCCA
GGTGACCTTGGATTATCCGTCGCAACTGAGCCATCGTGCTGGGCGGGGGC
GTGCCGTAGACATAGGCTTTGGCGGGGGGGCGCGGCAAGTAGTCCCGACC
CGAGGTGGCGGCACTTGCCACTGCCATTAGGGTTAACAGCCAAACAAAAG
TCCTGTACATGTCGACTGATAACT

BS11530.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG15554-PA 444 CG15554-RA 1..444 460..17 2220 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:42:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG15554-RA 801 CG15554-RA 89..533 460..16 2225 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:42:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31126643..31127067 440..16 2125 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:42:10 has no hits.

BS11530.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:12:05 Download gff for BS11530.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15554-PA 1..444 17..460 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:43:47 Download gff for BS11530.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15554-PA 1..444 17..460 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:45:23 Download gff for BS11530.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15554-RA 83..538 7..463 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:30:07 Download gff for BS11530.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15554-RA 85..540 7..463 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:30:07 Download gff for BS11530.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31126233..31126257 440..463 96 -> Minus
3R 31126644..31127074 7..439 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:45:23 Download gff for BS11530.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26951955..26951979 440..463 96 -> Minus
arm_3R 26952366..26952796 7..439 99   Minus

BS11530.5prime Sequence

474 bp (473 high quality bases) assembled on 2006-05-08

> BS11530.5prime
GAAGTTATCAGTCGACATGTACAGGACTTTTGTTTGGCTGTTAACCCTAA
TGGCAGTGGCAAGTGCCGCCACCTCGGGTCGGGACTACTTGCCGCGCCCC
CCCGCCAAAGCCTATGTCTACGGCACGCCCCCGCCCAGCACGATGGCTCA
GTTGCGACGGATAATCCAAGGTCACCTGGAGCGCTTCCAGCTGGCGGAGC
AGGCCCACTTTTCCCGCCGCGCCAATGTGCAGCTGGGGAAATCGGAAGTG
CCGGCGGACAGAAAACCGCTGGCGATGCAATTGTGGGTGGTTCGCACGCC
CGCCATTTCCGGCGCGGCCTCGGATAACGTCCTCGATTACGCCCTGCCGC
CCAACACGCCCACTCCGAAGGACTACGCGCACAAGTTCCTGCCCGAGGGC
AAGGATGTGGTACCCGGAAGCTCTTACATACCGCTGCGGTTGCTGGTGAT
AAAGCGCTGAAAGCTTTCTAGACC

BS11530.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG15554-PA 444 CG15554-RA 1..444 17..460 2220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:25:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG15554-RA 801 CG15554-RA 89..533 17..461 2225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31126643..31127067 37..461 2125 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:25:56 has no hits.

BS11530.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:12:06 Download gff for BS11530.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15554-PA 1..444 17..460 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:43:49 Download gff for BS11530.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15554-PA 1..444 17..460 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:04:42 Download gff for BS11530.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15554-RA 83..538 14..470 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:40 Download gff for BS11530.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15554-RA 85..540 14..470 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:40 Download gff for BS11530.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31126233..31126257 14..37 96 -> Plus
3R 31126644..31127074 38..470 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:04:42 Download gff for BS11530.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26951955..26951979 14..37 96 -> Plus
arm_3R 26952366..26952796 38..470 99   Plus

BS11530.complete Sequence

476 bp assembled on 2006-11-01

GenBank Submission: FJ636898

> BS11530.complete
GAAGTTATCAGTCGACATGTACAGGACTTTTGTTTGGCTGTTAACCCTAA
TGGCAGTGGCAAGTGCCGCCACCTCGGGTCGGGACTACTTGCCGCGCCCC
CCCGCCAAAGCCTATGTCTACGGCACGCCCCCGCCCAGCACGATGGCTCA
GTTGCGACGGATAATCCAAGGTCACCTGGAGCGCTTCCAGCTGGCGGAGC
AGGCCCACTTTTCCCGCCGCGCCAATGTGCAGCTGGGGAAATCGGAAGTG
CCGGCGGACAGAAAACCGCTGGCGATGCAATTGTGGGTGGTTCGCACGCC
CGCCATTTCCGGCGCGGCCTCGGATAACGTCCTCGATTACGCCCTGCCGC
CCAACACGCCCACTCCGAAGGACTACGCGCACAAGTTCCTGCCCGAGGGC
AAGGATGTGGTACCCGGAAGCTCTTACATACCGCTGCGGTTGCTGGTGAT
AAAGCGCTGAAAGCTTTCTAGACCAT

BS11530.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:39:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG15554-RA 444 CG15554-PA 1..444 17..460 2220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:39:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG15554-RA 801 CG15554-RA 89..533 17..461 2225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:39:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31126643..31127067 37..461 2125 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:39:46 has no hits.

BS11530.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:04 Download gff for BS11530.complete
Subject Subject Range Query Range Percent Splice Strand
CG15554-RA 1..444 17..460 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:04 Download gff for BS11530.complete
Subject Subject Range Query Range Percent Splice Strand
CG15554-RA 83..538 14..470 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:25 Download gff for BS11530.complete
Subject Subject Range Query Range Percent Splice Strand
CG15554-RA 87..529 17..459 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:04 Download gff for BS11530.complete
Subject Subject Range Query Range Percent Splice Strand
CG15554-RA 83..538 14..470 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:44 Download gff for BS11530.complete
Subject Subject Range Query Range Percent Splice Strand
CG15554-RA 89..531 17..459 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:44 Download gff for BS11530.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31126237..31126257 17..37 100 -> Plus
3R 31126644..31127065 38..459 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:25 Download gff for BS11530.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26951959..26951979 17..37 100 -> Plus
arm_3R 26952366..26952787 38..459 100   Plus

BS11530.pep Sequence

Translation from 16 to 459

> BS11530.pep
MYRTFVWLLTLMAVASAATSGRDYLPRPPAKAYVYGTPPPSTMAQLRRII
QGHLERFQLAEQAHFSRRANVQLGKSEVPADRKPLAMQLWVVRTPAISGA
ASDNVLDYALPPNTPTPKDYAHKFLPEGKDVVPGSSYIPLRLLVIKR*

BS11530.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG15554-PA 147 CG15554-PA 1..147 1..147 764 100 Plus