Clone Sequence Records
BS11530.3prime Sequence
474 bp (473 high quality bases) assembled on 2006-05-08
> BS11530.3prime
ATGGTCTAGAAAGCTTTCAGCGCTTTATCACCAGCAACCGCAGCGGTATG
TAAGAGCTTCCGGGTACCACATCCTTGCCCTCGGGCAGGAACTTGTGCGC
GTAGTCCTTCGGAGTGGGCGTGTTGGGCGGCAGGGCGTAATCGAGGACGT
TATCCGAGGCCGCGCCGGAAATGGCGGGCGTGCGAACCACCCACAATTGC
ATCGCCAGCGGTTTTCTGTCCGCCGGCACTTCCGATTTCCCCAGCTGCAC
ATTGGCGCGGCGGGAAAAGTGGGCCTGCTCCGCCAGCTGGAAGCGCTCCA
GGTGACCTTGGATTATCCGTCGCAACTGAGCCATCGTGCTGGGCGGGGGC
GTGCCGTAGACATAGGCTTTGGCGGGGGGGCGCGGCAAGTAGTCCCGACC
CGAGGTGGCGGCACTTGCCACTGCCATTAGGGTTAACAGCCAAACAAAAG
TCCTGTACATGTCGACTGATAACT
BS11530.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15554-PA | 444 | CG15554-RA | 1..444 | 460..17 | 2220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:42:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15554-RA | 801 | CG15554-RA | 89..533 | 460..16 | 2225 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:42:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31126643..31127067 | 440..16 | 2125 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:42:10 has no hits.
BS11530.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:12:05 Download gff for
BS11530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15554-PA | 1..444 | 17..460 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:43:47 Download gff for
BS11530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15554-PA | 1..444 | 17..460 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:45:23 Download gff for
BS11530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15554-RA | 83..538 | 7..463 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:30:07 Download gff for
BS11530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15554-RA | 85..540 | 7..463 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:30:07 Download gff for
BS11530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31126233..31126257 | 440..463 | 96 | -> | Minus |
3R | 31126644..31127074 | 7..439 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:45:23 Download gff for
BS11530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26951955..26951979 | 440..463 | 96 | -> | Minus |
arm_3R | 26952366..26952796 | 7..439 | 99 | | Minus |
BS11530.5prime Sequence
474 bp (473 high quality bases) assembled on 2006-05-08
> BS11530.5prime
GAAGTTATCAGTCGACATGTACAGGACTTTTGTTTGGCTGTTAACCCTAA
TGGCAGTGGCAAGTGCCGCCACCTCGGGTCGGGACTACTTGCCGCGCCCC
CCCGCCAAAGCCTATGTCTACGGCACGCCCCCGCCCAGCACGATGGCTCA
GTTGCGACGGATAATCCAAGGTCACCTGGAGCGCTTCCAGCTGGCGGAGC
AGGCCCACTTTTCCCGCCGCGCCAATGTGCAGCTGGGGAAATCGGAAGTG
CCGGCGGACAGAAAACCGCTGGCGATGCAATTGTGGGTGGTTCGCACGCC
CGCCATTTCCGGCGCGGCCTCGGATAACGTCCTCGATTACGCCCTGCCGC
CCAACACGCCCACTCCGAAGGACTACGCGCACAAGTTCCTGCCCGAGGGC
AAGGATGTGGTACCCGGAAGCTCTTACATACCGCTGCGGTTGCTGGTGAT
AAAGCGCTGAAAGCTTTCTAGACC
BS11530.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:10:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15554-PA | 444 | CG15554-RA | 1..444 | 17..460 | 2220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:25:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15554-RA | 801 | CG15554-RA | 89..533 | 17..461 | 2225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:25:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31126643..31127067 | 37..461 | 2125 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:25:56 has no hits.
BS11530.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:12:06 Download gff for
BS11530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15554-PA | 1..444 | 17..460 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:43:49 Download gff for
BS11530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15554-PA | 1..444 | 17..460 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:04:42 Download gff for
BS11530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15554-RA | 83..538 | 14..470 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:40 Download gff for
BS11530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15554-RA | 85..540 | 14..470 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:40 Download gff for
BS11530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31126233..31126257 | 14..37 | 96 | -> | Plus |
3R | 31126644..31127074 | 38..470 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:04:42 Download gff for
BS11530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26951955..26951979 | 14..37 | 96 | -> | Plus |
arm_3R | 26952366..26952796 | 38..470 | 99 | | Plus |
BS11530.complete Sequence
476 bp assembled on 2006-11-01
GenBank Submission: FJ636898
> BS11530.complete
GAAGTTATCAGTCGACATGTACAGGACTTTTGTTTGGCTGTTAACCCTAA
TGGCAGTGGCAAGTGCCGCCACCTCGGGTCGGGACTACTTGCCGCGCCCC
CCCGCCAAAGCCTATGTCTACGGCACGCCCCCGCCCAGCACGATGGCTCA
GTTGCGACGGATAATCCAAGGTCACCTGGAGCGCTTCCAGCTGGCGGAGC
AGGCCCACTTTTCCCGCCGCGCCAATGTGCAGCTGGGGAAATCGGAAGTG
CCGGCGGACAGAAAACCGCTGGCGATGCAATTGTGGGTGGTTCGCACGCC
CGCCATTTCCGGCGCGGCCTCGGATAACGTCCTCGATTACGCCCTGCCGC
CCAACACGCCCACTCCGAAGGACTACGCGCACAAGTTCCTGCCCGAGGGC
AAGGATGTGGTACCCGGAAGCTCTTACATACCGCTGCGGTTGCTGGTGAT
AAAGCGCTGAAAGCTTTCTAGACCAT
BS11530.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:39:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15554-RA | 444 | CG15554-PA | 1..444 | 17..460 | 2220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:39:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15554-RA | 801 | CG15554-RA | 89..533 | 17..461 | 2225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:39:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31126643..31127067 | 37..461 | 2125 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:39:46 has no hits.
BS11530.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:04 Download gff for
BS11530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15554-RA | 1..444 | 17..460 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:04 Download gff for
BS11530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15554-RA | 83..538 | 14..470 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:25 Download gff for
BS11530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15554-RA | 87..529 | 17..459 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:04 Download gff for
BS11530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15554-RA | 83..538 | 14..470 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:44 Download gff for
BS11530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15554-RA | 89..531 | 17..459 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:44 Download gff for
BS11530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31126237..31126257 | 17..37 | 100 | -> | Plus |
3R | 31126644..31127065 | 38..459 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:25 Download gff for
BS11530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26951959..26951979 | 17..37 | 100 | -> | Plus |
arm_3R | 26952366..26952787 | 38..459 | 100 | | Plus |
BS11530.pep Sequence
Translation from 16 to 459
> BS11530.pep
MYRTFVWLLTLMAVASAATSGRDYLPRPPAKAYVYGTPPPSTMAQLRRII
QGHLERFQLAEQAHFSRRANVQLGKSEVPADRKPLAMQLWVVRTPAISGA
ASDNVLDYALPPNTPTPKDYAHKFLPEGKDVVPGSSYIPLRLLVIKR*
BS11530.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15554-PA | 147 | CG15554-PA | 1..147 | 1..147 | 764 | 100 | Plus |