Clone BS11538 Report

Search the DGRC for BS11538

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:115
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptATPsyn-beta-RA
Protein status:BS11538.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11538.3prime Sequence

879 bp (834 high quality bases) assembled on 2006-05-08

> BS11538.3prime
ATGGTCTAGAAAGCTTCTAGGCAGCTTCCTTTGCCAGGCGGTCAGCCTTT
TCTACAACTTCTTCGATTGGGCCGACCATGTAGAAAGCAACTTCAGGTAG
ATGGTCGTAGTCCCCAGCTAGAATTGCTGAGAAACCTTTTATAGTTTGCT
CCAGGGGCACTAGTTTACCAGCATGCCCGGTGAAGACTTCAGCAACTTGG
AATGGCTGCGACAAGAAACGCTGAATCTTGCGAGCACGAGCGACTGTGAG
CTTATCTTCCTCAGACAACTCATCCATTCCGAGAATGGCTATTATATCCT
GAAGTGATTTGTAGTCTTGCAAGATTTTCTGCACACCACGGGCAACGTTA
TAGTGTTCTTGGCCAATGATGTTGGGATCCATGATTCGAGAAGTCGAATC
CAGTGGATCCACAGCAGGGTAAATACCCAGTTCGGCAATCGCACGCGAGA
GTACAGTGGTGGCATCCAAATGAGCGAATGTAGTAGCAGGAGCAGGATCG
GTCAAATCATCAGCGGGCACATATATGGCCTGAACAGAAGTAATGGATCC
CTTTTTGGTGGTGGTAATACGCTCCTGCATAGAACCCATGTCGGTAGCCA
AGGTTGGCTGGTAACCGACGGCTGAGGGAATACGACCCAACAAAGCGGAC
ACTTCTGAGCCAGCTTGAGTAAATCGGAAAATGTTGTCGATAAACAGCAA
CACATCCTGTCCTTCTTGATCACGGAAGTACTCTGCAACGGTCAGTCCAG
TTAGAGCAACACGGGCACGAGCACCTGGCGGCTCGTTCATTTGCCCATAT
ACGAGAGCCACCTTTGAGGTCTTGTCCTTTAGTGAAATAACACCACCCTC
GATCATCTCATTGTATAAATCGTTTCCCT

BS11538.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:11:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG11154-PA 1518 ATPsyn-beta-RA 656..1518 879..17 4315 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:53:25
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-beta-RC 2026 CG11154-RC 1020..1883 879..16 4320 100 Minus
ATPsyn-beta-RD 2048 CG11154-RD 682..1545 879..16 4320 100 Minus
ATPsyn-beta-RA 1688 CG11154-RA 682..1545 879..16 4320 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:53:21
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 1033551..1034414 879..16 4320 100 Minus
3L 28110227 3L 16099039..16099709 819..149 880 75.4 Minus
Blast to na_te.dros performed 2015-02-12 18:53:23
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 627..694 521..454 115 63.2 Minus

BS11538.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:12:18 Download gff for BS11538.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11154-PA 656..1518 17..879 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:44:06 Download gff for BS11538.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11154-PA 656..1518 17..879 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:49:59 Download gff for BS11538.3prime
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-beta-RA 682..1555 8..879 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:30:53 Download gff for BS11538.3prime
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-beta-RA 682..1555 8..879 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:30:53 Download gff for BS11538.3prime
Subject Subject Range Query Range Percent Splice Strand
4 1033551..1034424 8..879 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:49:59 Download gff for BS11538.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 1054177..1055050 8..879 99   Minus

BS11538.5prime Sequence

865 bp (796 high quality bases) assembled on 2006-05-08

> BS11538.5prime
GAAGTTATCAGTCGACATGTTCGCGTTACGTGCTGCATCTAAAGCCGATA
AGAATTTGCTGCCATTCTTGGGGCAATTGTCTCGTAGCCATGCTGCCAAG
GCTGCAAAGGCTGCAGCTGCCGCAAATGGAAAGATTGTGGCCGTAATTGG
TGCAGTCGTCGATGTCCAGTTTGATGATAACTTACCGCCCATTCTGAATG
CCTTGGAAGTAGACAACCGTTCTCCTCGGCTCGTGCTAGAGGTGGCCCAG
CACTTGGGAGAAAATACCGTGCGCACTATCGCCATGGATGGTACCGAAGG
CTTGGTTCGCGGACAGAAGGTTCTCGATACTGGGTATCCTATCCGAATTC
CAGTTGGTGCCGAAACACTAGGACGCATCATTAATGTTATTGGTGAACCC
ATTGATGAGCGTGGACCAATTGATACAGACAAGACCGCTGCCATTCATGC
TGAGGCTCCTGAATTCGTTCAGATGTCTGTTGAGCAAGAGATTCTTGTCA
CTGGAATCAAAGTCGTCGATCTCCTGGCTCCATACGCCAAAGGTGGTAAA
ATTGGGTTGTTTGGAGGTGCCGGTGTGGGCAAAACTGTGTTGATCATGGA
GCTCATTAACAACGTGGCTAAAGCTCATGGTGGATACTCGGTTTTCGCGG
GAGTTGGTGAACGCACTCGTGAGGGAAACGATTTATACAATGAGATGATC
GAGGGTGGTGTTATTTCACTAAAGGACAAGACCTCAAAGGTGGCTCTCGT
ATATGGGCAAATGAACGAGCCGCCAGGTGCTCGTGCCCGTGTTGCTCTAA
CTGGACTGACCGTTGCAGAGTACTTCCGTGATCAAGAAGGACAGGATGTG
TTGCTGTTTATCGAC

BS11538.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:11:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG11154-PA 1518 ATPsyn-beta-RA 1..849 17..865 4245 100 Plus
CG11154-PB 384 ATPsyn-beta-RB 1..378 17..394 1890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:09:23
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-beta-RD 2048 CG11154-RD 27..875 17..865 4245 100 Plus
ATPsyn-beta-RA 1688 CG11154-RA 27..875 17..865 4245 100 Plus
ATPsyn-beta-RC 2026 CG11154-RC 347..1213 17..865 4055 97.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 1033271..1033744 392..865 2370 100 Plus
4 1348131 4 1032907..1033220 81..394 1570 100 Plus
3L 28110227 3L 16098790..16099172 483..865 415 73.9 Plus
4 1348131 4 1031890..1031953 17..80 320 100 Plus
3R 32079331 3R 19920789..19920871 630..712 205 83.1 Plus
Blast to na_te.dros performed on 2015-02-10 00:09:20 has no hits.

BS11538.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:12:19 Download gff for BS11538.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11154-PA 1..849 17..865 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:44:07 Download gff for BS11538.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11154-PA 1..849 17..865 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:32:14 Download gff for BS11538.5prime
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-beta-RA 21..875 10..865 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:01:51 Download gff for BS11538.5prime
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-beta-RA 21..875 10..865 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:01:51 Download gff for BS11538.5prime
Subject Subject Range Query Range Percent Splice Strand
4 1031884..1031953 10..80 94 -> Plus
4 1032907..1033218 81..392 100 -> Plus
4 1033272..1033744 393..865 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:32:14 Download gff for BS11538.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 1052510..1052579 10..80 94 -> Plus
arm_4 1053533..1053844 81..392 100 -> Plus
arm_4 1053898..1054370 393..865 100   Plus

BS11538.complete Sequence

1550 bp assembled on 2007-10-17

GenBank Submission: FJ636899

> BS11538.complete
GAAGTTATCAGTCGACATGTTCGCGTTACGTGCTGCATCTAAAGCCGATA
AGAATTTGCTGCCATTCTTGGGGCAATTGTCTCGTAGCCATGCTGCCAAG
GCTGCAAAGGCTGCAGCTGCCGCAAATGGAAAGATTGTGGCCGTAATTGG
TGCAGTCGTCGATGTCCAGTTTGATGATAACTTACCGCCCATTCTGAATG
CCTTGGAAGTAGACAACCGTTCTCCTCGGCTCGTGCTAGAGGTGGCCCAG
CACTTGGGAGAAAATACCGTGCGCACTATCGCCATGGATGGTACCGAAGG
CTTGGTTCGCGGACAGAAGGTTCTCGATACTGGGTATCCTATCCGAATTC
CAGTTGGTGCCGAAACACTAGGACGCATCATTAATGTTATTGGTGAACCC
ATTGATGAGCGTGGACCAATTGATACAGACAAGACCGCTGCCATTCATGC
TGAGGCTCCTGAATTCGTTCAGATGTCTGTTGAGCAAGAGATTCTTGTCA
CTGGAATCAAAGTCGTCGATCTCCTGGCTCCATACGCCAAAGGTGGTAAA
ATTGGGTTGTTTGGAGGTGCCGGTGTGGGCAAAACTGTGTTGATCATGGA
GCTCATTAACAACGTGGCTAAAGCTCATGGTGGATACTCGGTTTTCGCGG
GAGTTGGTGAACGCACTCGTGAGGGAAACGATTTATACAATGAGATGATC
GAGGGTGGTGTTATTTCACTAAAGGACAAGACCTCAAAGGTGGCTCTCGT
ATATGGGCAAATGAACGAGCCGCCAGGTGCTCGTGCCCGTGTTGCTCTAA
CTGGACTGACCGTTGCAGAGTACTTCCGTGATCAAGAAGGACAGGATGTG
TTGCTGTTTATCGACAACATTTTCCGATTTACTCAAGCTGGCTCAGAAGT
GTCCGCTTTGTTGGGTCGTATTCCCTCAGCCGTCGGTTACCAGCCAACCT
TGGCTACCGACATGGGTTCTATGCAGGAGCGTATTACCACCACCAAAAAG
GGATCCATTACTTCTGTTCAGGCCATATATGTGCCCGCTGATGATTTGAC
CGATCCTGCTCCTGCTACTACATTCGCTCATTTGGATGCCACCACTGTAC
TCTCGCGTGCGATTGCCGAACTGGGTATTTACCCTGCTGTGGATCCACTG
GATTCGACTTCTCGAATCATGGATCCCAACATCATTGGCCAAGAACACTA
TAACGTTGCCCGTGGTGTGCAGAAAATCTTGCAAGACTACAAATCACTTC
AGGATATAATAGCCATTCTCGGAATGGATGAGTTGTCTGAGGAAGATAAG
CTCACAGTCGCTCGTGCTCGCAAGATTCAGCGTTTCTTGTCGCAGCCATT
CCAAGTTGCTGAAGTCTTCACCGGGCATGCTGGTAAACTAGTGCCCCTGG
AGCAAACTATAAAAGGTTTCTCAGCAATTCTAGCTGGGGACTACGACCAT
CTACCTGAAGTTGCTTTCTACATGGTCGGCCCAATCGAAGAAGTTGTAGA
AAAGGCTGACCGCCTGGCAAAGGAAGCTGCCTAGAAGCTTTCTAGACCAT

BS11538.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:02:02
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-beta-RD 1518 CG11154-PD 1..1518 17..1534 7590 100 Plus
ATPsyn-beta-RA 1518 CG11154-PA 1..1518 17..1534 7590 100 Plus
ATPsyn-beta-RC 1536 CG11154-PC 1..1536 17..1534 7375 98.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:02:04
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-beta-RD 2048 CG11154-RD 27..1545 17..1535 7595 100 Plus
ATPsyn-beta-RA 1688 CG11154-RA 27..1545 17..1535 7595 100 Plus
ATPsyn-beta-RC 2026 CG11154-RC 347..1883 17..1535 7380 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:02:00
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 1033271..1034414 392..1535 5720 100 Plus
4 1348131 4 1032907..1033220 81..394 1570 100 Plus
3L 28110227 3L 16098790..16099709 483..1402 1120 74.8 Plus
4 1348131 4 1031890..1031953 17..80 320 100 Plus
3R 32079331 3R 19920789..19920871 630..712 205 83.1 Plus
Blast to na_te.dros performed 2014-11-27 14:02:01
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 627..694 1030..1097 115 63.2 Plus

BS11538.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:14:08 Download gff for BS11538.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-beta-RA 1..1518 17..1534 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:31:33 Download gff for BS11538.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-beta-RA 82..1594 22..1534 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:38:38 Download gff for BS11538.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-beta-RA 32..1544 22..1534 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:14:09 Download gff for BS11538.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-beta-RA 71..1605 10..1543 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:23 Download gff for BS11538.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-beta-RA 32..1544 22..1534 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:23 Download gff for BS11538.complete
Subject Subject Range Query Range Percent Splice Strand
4 1031895..1031953 22..80 100 -> Plus
4 1032907..1033218 81..392 100 -> Plus
4 1033272..1034413 393..1534 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:38:38 Download gff for BS11538.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 1052521..1052579 22..80 100 -> Plus
arm_4 1053533..1053844 81..392 100 -> Plus
arm_4 1053898..1055039 393..1534 100   Plus

BS11538.pep Sequence

Translation from 16 to 1533

> BS11538.pep
MFALRAASKADKNLLPFLGQLSRSHAAKAAKAAAAANGKIVAVIGAVVDV
QFDDNLPPILNALEVDNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQ
KVLDTGYPIRIPVGAETLGRIINVIGEPIDERGPIDTDKTAAIHAEAPEF
VQMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV
AKAHGGYSVFAGVGERTREGNDLYNEMIEGGVISLKDKTSKVALVYGQMN
EPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLG
RIPSAVGYQPTLATDMGSMQERITTTKKGSITSVQAIYVPADDLTDPAPA
TTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGQEHYNVARG
VQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEV
FTGHAGKLVPLEQTIKGFSAILAGDYDHLPEVAFYMVGPIEEVVEKADRL
AKEAA*

BS11538.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:32:58
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-beta-PD 505 CG11154-PD 1..505 1..505 2520 100 Plus
ATPsyn-beta-PA 505 CG11154-PA 1..505 1..505 2520 100 Plus
ATPsyn-beta-PC 511 CG11154-PC 1..511 1..505 2503 98.8 Plus
ms(3)72Dt-PA 622 CG5389-PA 104..568 38..501 1824 76.1 Plus
Vha68-3-PA 743 CG5075-PA 349..644 160..443 297 29.4 Plus