Clone Sequence Records
BS11545.3prime Sequence
681 bp (680 high quality bases) assembled on 2006-05-08
> BS11545.3prime
ATGGTCTAGAAAGCTTTTACAAAATTGCGGAACAAGTGGGCAGTTTGATG
TTGAACTTTTTCAGATACTGCCGACAGAAGTGTCTTTCGAAGTTGTTGCG
AATGCTTCTCTGGTCGTAAGGATCAAAGTCATTCTCGAACACAATGGTGG
GCACAAAGGAGATGCCCAGTTTAAGGGTTTCCTTGCCGTAGGGCGCCAGT
ATTTCTGCCGTGGTTCGGGATGCCTTACACTCCCTGGCCTTGCTGACGTC
CACACCCATGCTCCTCGAGCACGGGCCCAGCTCATTCGAATAGGAGCGCA
GCATGCAGTAGATCAGATTGAAGGCCTTCCGAATGTCCAGGGTCTCAATA
ATGCAGGCATGGAGTGCATTTAGTTCGCACTCATCCACGCCATGCTGACA
AAATACTTGGCTCTCGCCAGTGGATGTGTTGTTGTAGAACCCCGCCTTGC
CAAATGGATATAGCTTTAGATCGGTGACCGACCACCAGTCGTTGTCCTGC
AGAGCATCGTACAATCTGCGCCGGATGAAGCTCATGCTGTCCGGGCACAG
GGCCTCGTAGTGAATGGCCACCAGGAGCCGGGACTCATCCGGGGACTGGC
CATTTCCGGGCGTGGGCCAAACGAGCAGCAGACACAGGGTAAACAGTAGC
CCAAATATTTTATTCATGTCGACTGATAACT
BS11545.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:11:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13822-PA | 651 | CG13822-RA | 1..651 | 667..17 | 3255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:05:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GILT3-RA | 773 | CG13822-RA | 53..704 | 667..16 | 3260 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:05:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23677855..23678165 | 440..130 | 1555 | 100 | Minus |
3R | 32079331 | 3R | 23677410..23677637 | 667..440 | 1140 | 100 | Minus |
3R | 32079331 | 3R | 23678238..23678352 | 130..16 | 575 | 100 | Minus |
Blast to na_te.dros performed 2015-02-08 13:05:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy9 | 5349 | gypsy9 GYPSY9 5349bp | 2964..3014 | 462..513 | 113 | 71.2 | Plus |
BS11545.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:12:29 Download gff for
BS11545.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13822-PA | 1..651 | 17..667 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:44:22 Download gff for
BS11545.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13822-PA | 1..651 | 17..667 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:42:51 Download gff for
BS11545.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13822-RA | 49..710 | 7..670 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:25:53 Download gff for
BS11545.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GILT3-RA | 49..710 | 7..670 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:25:53 Download gff for
BS11545.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23677406..23677637 | 440..670 | 99 | -> | Minus |
3R | 23677856..23678164 | 131..439 | 100 | -> | Minus |
3R | 23678238..23678358 | 7..130 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:42:51 Download gff for
BS11545.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19503128..19503359 | 440..670 | 99 | -> | Minus |
arm_3R | 19503578..19503886 | 131..439 | 100 | -> | Minus |
arm_3R | 19503960..19504080 | 7..130 | 97 | | Minus |
BS11545.5prime Sequence
681 bp (680 high quality bases) assembled on 2006-05-08
> BS11545.5prime
GAAGTTATCAGTCGACATGAATAAAATATTTGGGCTACTGTTTACCCTGT
GTCTGCTGCTCGTTTGGCCCACGCCCGGAAATGGCCAGTCCCCGGATGAG
TCCCGGCTCCTGGTGGCCATTCACTACGAGGCCCTGTGCCCGGACAGCAT
GAGCTTCATCCGGCGCAGATTGTACGATGCTCTGCAGGACAACGACTGGT
GGTCGGTCACCGATCTAAAGCTATATCCATTTGGCAAGGCGGGGTTCTAC
AACAACACATCCACTGGCGAGAGCCAAGTATTTTGTCAGCATGGCGTGGA
TGAGTGCGAACTAAATGCACTCCATGCCTGCATTATTGAGACCCTGGACA
TTCGGAAGGCCTTCAATCTGATCTACTGCATGCTGCGCTCCTATTCGAAT
GAGCTGGGCCCGTGCTCGAGGAGCATGGGTGTGGACGTCAGCAAGGCCAG
GGAGTGTAAGGCATCCCGAACCACGGCAGAAATACTGGCGCCCTACGGCA
AGGAAACCCTTAAACTGGGCATCTCCTTTGTGCCCACCATTGTGTTCGAG
AATGACTTTGATCCTTACGACCAGAGAAGCATTCGCAACAACTTCGAAAG
ACACTTCTGTCGGCAGTATCTGAAAAAGTTCAACATCAAACTGCCCACTT
GTTCCGCAATTTTGTAAAAGCTTTCTAGACC
BS11545.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:11:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13822-PA | 651 | CG13822-RA | 1..651 | 17..667 | 3255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:09:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GILT3-RA | 773 | CG13822-RA | 53..704 | 17..668 | 3260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:09:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23677855..23678165 | 244..554 | 1555 | 100 | Plus |
3R | 32079331 | 3R | 23677410..23677637 | 17..244 | 1140 | 100 | Plus |
3R | 32079331 | 3R | 23678238..23678352 | 554..668 | 575 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 00:09:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy9 | 5349 | gypsy9 GYPSY9 5349bp | 2964..3014 | 222..171 | 113 | 71.2 | Minus |
BS11545.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:12:31 Download gff for
BS11545.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13822-PA | 1..651 | 17..667 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:44:24 Download gff for
BS11545.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13822-PA | 1..651 | 17..667 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:32:11 Download gff for
BS11545.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13822-RA | 49..710 | 14..677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:01:49 Download gff for
BS11545.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GILT3-RA | 49..710 | 14..677 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:01:49 Download gff for
BS11545.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23677406..23677637 | 14..244 | 99 | -> | Plus |
3R | 23677856..23678164 | 245..553 | 100 | -> | Plus |
3R | 23678238..23678358 | 554..677 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:32:11 Download gff for
BS11545.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19503128..19503359 | 14..244 | 99 | -> | Plus |
arm_3R | 19503578..19503886 | 245..553 | 100 | -> | Plus |
arm_3R | 19503960..19504080 | 554..677 | 97 | | Plus |
BS11545.complete Sequence
683 bp assembled on 2006-11-01
GenBank Submission: FJ636900
> BS11545.complete
GAAGTTATCAGTCGACATGAATAAAATATTTGGGCTACTGTTTACCCTGT
GTCTGCTGCTCGTTTGGCCCACGCCCGGAAATGGCCAGTCCCCGGATGAG
TCCCGGCTCCTGGTGGCCATTCACTACGAGGCCCTGTGCCCGGACAGCAT
GAGCTTCATCCGGCGCAGATTGTACGATGCTCTGCAGGACAACGACTGGT
GGTCGGTCACCGATCTAAAGCTATATCCATTTGGCAAGGCGGGGTTCTAC
AACAACACATCCACTGGCGAGAGCCAAGTATTTTGTCAGCATGGCGTGGA
TGAGTGCGAACTAAATGCACTCCATGCCTGCATTATTGAGACCCTGGACA
TTCGGAAGGCCTTCAATCTGATCTACTGCATGCTGCGCTCCTATTCGAAT
GAGCTGGGCCCGTGCTCGAGGAGCATGGGTGTGGACGTCAGCAAGGCCAG
GGAGTGTAAGGCATCCCGAACCACGGCAGAAATACTGGCGCCCTACGGCA
AGGAAACCCTTAAACTGGGCATCTCCTTTGTGCCCACCATTGTGTTCGAG
AATGACTTTGATCCTTACGACCAGAGAAGCATTCGCAACAACTTCGAAAG
ACACTTCTGTCGGCAGTATCTGAAAAAGTTCAACATCAAACTGCCCACTT
GTTCCGCAATTTTGTAAAAGCTTTCTAGACCAT
BS11545.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:06:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GILT3-RA | 651 | CG13822-PA | 1..651 | 17..667 | 3255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:06:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GILT3-RA | 773 | CG13822-RA | 53..704 | 17..668 | 3260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:06:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23677855..23678165 | 244..554 | 1555 | 100 | Plus |
3R | 32079331 | 3R | 23677410..23677637 | 17..244 | 1140 | 100 | Plus |
3R | 32079331 | 3R | 23678238..23678352 | 554..668 | 575 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 00:06:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy9 | 5349 | gypsy9 GYPSY9 5349bp | 2964..3014 | 222..171 | 113 | 71.2 | Minus |
BS11545.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:06 Download gff for
BS11545.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13822-RA | 1..651 | 17..667 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:06 Download gff for
BS11545.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13822-RA | 49..710 | 14..677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:17:51 Download gff for
BS11545.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13822-RA | 53..701 | 17..665 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:06 Download gff for
BS11545.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13822-RA | 49..710 | 14..677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:21 Download gff for
BS11545.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GILT3-RA | 53..701 | 17..665 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:21 Download gff for
BS11545.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23677410..23677637 | 17..244 | 100 | -> | Plus |
3R | 23677856..23678164 | 245..553 | 100 | -> | Plus |
3R | 23678238..23678349 | 554..665 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:17:51 Download gff for
BS11545.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19503132..19503359 | 17..244 | 100 | -> | Plus |
arm_3R | 19503578..19503886 | 245..553 | 100 | -> | Plus |
arm_3R | 19503960..19504071 | 554..665 | 100 | | Plus |
BS11545.pep Sequence
Translation from 16 to 666
> BS11545.pep
MNKIFGLLFTLCLLLVWPTPGNGQSPDESRLLVAIHYEALCPDSMSFIRR
RLYDALQDNDWWSVTDLKLYPFGKAGFYNNTSTGESQVFCQHGVDECELN
ALHACIIETLDIRKAFNLIYCMLRSYSNELGPCSRSMGVDVSKARECKAS
RTTAEILAPYGKETLKLGISFVPTIVFENDFDPYDQRSIRNNFERHFCRQ
YLKKFNIKLPTCSAIL*
BS11545.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GILT3-PA | 216 | CG13822-PA | 1..216 | 1..216 | 1161 | 100 | Plus |
GILT2-PA | 207 | CG10157-PA | 7..206 | 11..212 | 381 | 38.5 | Plus |
CG41378-PB | 228 | CG41378-PB | 11..195 | 3..178 | 183 | 28.6 | Plus |
CG41378-PC | 196 | CG41378-PC | 13..163 | 30..178 | 182 | 31 | Plus |
CG41378-PD | 205 | CG41378-PD | 22..172 | 30..178 | 182 | 31 | Plus |