Clone BS11545 Report

Search the DGRC for BS11545

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:115
Well:45
Vector:pDNR-Dual
Associated Gene/TranscriptGILT3-RA
Protein status:BS11545.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11545.3prime Sequence

681 bp (680 high quality bases) assembled on 2006-05-08

> BS11545.3prime
ATGGTCTAGAAAGCTTTTACAAAATTGCGGAACAAGTGGGCAGTTTGATG
TTGAACTTTTTCAGATACTGCCGACAGAAGTGTCTTTCGAAGTTGTTGCG
AATGCTTCTCTGGTCGTAAGGATCAAAGTCATTCTCGAACACAATGGTGG
GCACAAAGGAGATGCCCAGTTTAAGGGTTTCCTTGCCGTAGGGCGCCAGT
ATTTCTGCCGTGGTTCGGGATGCCTTACACTCCCTGGCCTTGCTGACGTC
CACACCCATGCTCCTCGAGCACGGGCCCAGCTCATTCGAATAGGAGCGCA
GCATGCAGTAGATCAGATTGAAGGCCTTCCGAATGTCCAGGGTCTCAATA
ATGCAGGCATGGAGTGCATTTAGTTCGCACTCATCCACGCCATGCTGACA
AAATACTTGGCTCTCGCCAGTGGATGTGTTGTTGTAGAACCCCGCCTTGC
CAAATGGATATAGCTTTAGATCGGTGACCGACCACCAGTCGTTGTCCTGC
AGAGCATCGTACAATCTGCGCCGGATGAAGCTCATGCTGTCCGGGCACAG
GGCCTCGTAGTGAATGGCCACCAGGAGCCGGGACTCATCCGGGGACTGGC
CATTTCCGGGCGTGGGCCAAACGAGCAGCAGACACAGGGTAAACAGTAGC
CCAAATATTTTATTCATGTCGACTGATAACT

BS11545.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:11:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG13822-PA 651 CG13822-RA 1..651 667..17 3255 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:05:52
Subject Length Description Subject Range Query Range Score Percent Strand
GILT3-RA 773 CG13822-RA 53..704 667..16 3260 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:05:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23677855..23678165 440..130 1555 100 Minus
3R 32079331 3R 23677410..23677637 667..440 1140 100 Minus
3R 32079331 3R 23678238..23678352 130..16 575 100 Minus
Blast to na_te.dros performed 2015-02-08 13:05:48
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy9 5349 gypsy9 GYPSY9 5349bp 2964..3014 462..513 113 71.2 Plus

BS11545.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:12:29 Download gff for BS11545.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13822-PA 1..651 17..667 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:44:22 Download gff for BS11545.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13822-PA 1..651 17..667 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:42:51 Download gff for BS11545.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13822-RA 49..710 7..670 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:25:53 Download gff for BS11545.3prime
Subject Subject Range Query Range Percent Splice Strand
GILT3-RA 49..710 7..670 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:25:53 Download gff for BS11545.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23677406..23677637 440..670 99 -> Minus
3R 23677856..23678164 131..439 100 -> Minus
3R 23678238..23678358 7..130 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:42:51 Download gff for BS11545.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19503128..19503359 440..670 99 -> Minus
arm_3R 19503578..19503886 131..439 100 -> Minus
arm_3R 19503960..19504080 7..130 97   Minus

BS11545.5prime Sequence

681 bp (680 high quality bases) assembled on 2006-05-08

> BS11545.5prime
GAAGTTATCAGTCGACATGAATAAAATATTTGGGCTACTGTTTACCCTGT
GTCTGCTGCTCGTTTGGCCCACGCCCGGAAATGGCCAGTCCCCGGATGAG
TCCCGGCTCCTGGTGGCCATTCACTACGAGGCCCTGTGCCCGGACAGCAT
GAGCTTCATCCGGCGCAGATTGTACGATGCTCTGCAGGACAACGACTGGT
GGTCGGTCACCGATCTAAAGCTATATCCATTTGGCAAGGCGGGGTTCTAC
AACAACACATCCACTGGCGAGAGCCAAGTATTTTGTCAGCATGGCGTGGA
TGAGTGCGAACTAAATGCACTCCATGCCTGCATTATTGAGACCCTGGACA
TTCGGAAGGCCTTCAATCTGATCTACTGCATGCTGCGCTCCTATTCGAAT
GAGCTGGGCCCGTGCTCGAGGAGCATGGGTGTGGACGTCAGCAAGGCCAG
GGAGTGTAAGGCATCCCGAACCACGGCAGAAATACTGGCGCCCTACGGCA
AGGAAACCCTTAAACTGGGCATCTCCTTTGTGCCCACCATTGTGTTCGAG
AATGACTTTGATCCTTACGACCAGAGAAGCATTCGCAACAACTTCGAAAG
ACACTTCTGTCGGCAGTATCTGAAAAAGTTCAACATCAAACTGCCCACTT
GTTCCGCAATTTTGTAAAAGCTTTCTAGACC

BS11545.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:11:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG13822-PA 651 CG13822-RA 1..651 17..667 3255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:09:13
Subject Length Description Subject Range Query Range Score Percent Strand
GILT3-RA 773 CG13822-RA 53..704 17..668 3260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:09:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23677855..23678165 244..554 1555 100 Plus
3R 32079331 3R 23677410..23677637 17..244 1140 100 Plus
3R 32079331 3R 23678238..23678352 554..668 575 100 Plus
Blast to na_te.dros performed 2015-02-10 00:09:09
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy9 5349 gypsy9 GYPSY9 5349bp 2964..3014 222..171 113 71.2 Minus

BS11545.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:12:31 Download gff for BS11545.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13822-PA 1..651 17..667 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:44:24 Download gff for BS11545.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13822-PA 1..651 17..667 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:32:11 Download gff for BS11545.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13822-RA 49..710 14..677 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:01:49 Download gff for BS11545.5prime
Subject Subject Range Query Range Percent Splice Strand
GILT3-RA 49..710 14..677 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:01:49 Download gff for BS11545.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23677406..23677637 14..244 99 -> Plus
3R 23677856..23678164 245..553 100 -> Plus
3R 23678238..23678358 554..677 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:32:11 Download gff for BS11545.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19503128..19503359 14..244 99 -> Plus
arm_3R 19503578..19503886 245..553 100 -> Plus
arm_3R 19503960..19504080 554..677 97   Plus

BS11545.complete Sequence

683 bp assembled on 2006-11-01

GenBank Submission: FJ636900

> BS11545.complete
GAAGTTATCAGTCGACATGAATAAAATATTTGGGCTACTGTTTACCCTGT
GTCTGCTGCTCGTTTGGCCCACGCCCGGAAATGGCCAGTCCCCGGATGAG
TCCCGGCTCCTGGTGGCCATTCACTACGAGGCCCTGTGCCCGGACAGCAT
GAGCTTCATCCGGCGCAGATTGTACGATGCTCTGCAGGACAACGACTGGT
GGTCGGTCACCGATCTAAAGCTATATCCATTTGGCAAGGCGGGGTTCTAC
AACAACACATCCACTGGCGAGAGCCAAGTATTTTGTCAGCATGGCGTGGA
TGAGTGCGAACTAAATGCACTCCATGCCTGCATTATTGAGACCCTGGACA
TTCGGAAGGCCTTCAATCTGATCTACTGCATGCTGCGCTCCTATTCGAAT
GAGCTGGGCCCGTGCTCGAGGAGCATGGGTGTGGACGTCAGCAAGGCCAG
GGAGTGTAAGGCATCCCGAACCACGGCAGAAATACTGGCGCCCTACGGCA
AGGAAACCCTTAAACTGGGCATCTCCTTTGTGCCCACCATTGTGTTCGAG
AATGACTTTGATCCTTACGACCAGAGAAGCATTCGCAACAACTTCGAAAG
ACACTTCTGTCGGCAGTATCTGAAAAAGTTCAACATCAAACTGCCCACTT
GTTCCGCAATTTTGTAAAAGCTTTCTAGACCAT

BS11545.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:06:21
Subject Length Description Subject Range Query Range Score Percent Strand
GILT3-RA 651 CG13822-PA 1..651 17..667 3255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
GILT3-RA 773 CG13822-RA 53..704 17..668 3260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:06:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23677855..23678165 244..554 1555 100 Plus
3R 32079331 3R 23677410..23677637 17..244 1140 100 Plus
3R 32079331 3R 23678238..23678352 554..668 575 100 Plus
Blast to na_te.dros performed 2014-11-28 00:06:20
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy9 5349 gypsy9 GYPSY9 5349bp 2964..3014 222..171 113 71.2 Minus

BS11545.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:06 Download gff for BS11545.complete
Subject Subject Range Query Range Percent Splice Strand
CG13822-RA 1..651 17..667 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:06 Download gff for BS11545.complete
Subject Subject Range Query Range Percent Splice Strand
CG13822-RA 49..710 14..677 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:17:51 Download gff for BS11545.complete
Subject Subject Range Query Range Percent Splice Strand
CG13822-RA 53..701 17..665 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:06 Download gff for BS11545.complete
Subject Subject Range Query Range Percent Splice Strand
CG13822-RA 49..710 14..677 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:21 Download gff for BS11545.complete
Subject Subject Range Query Range Percent Splice Strand
GILT3-RA 53..701 17..665 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:21 Download gff for BS11545.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23677410..23677637 17..244 100 -> Plus
3R 23677856..23678164 245..553 100 -> Plus
3R 23678238..23678349 554..665 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:17:51 Download gff for BS11545.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19503132..19503359 17..244 100 -> Plus
arm_3R 19503578..19503886 245..553 100 -> Plus
arm_3R 19503960..19504071 554..665 100   Plus

BS11545.pep Sequence

Translation from 16 to 666

> BS11545.pep
MNKIFGLLFTLCLLLVWPTPGNGQSPDESRLLVAIHYEALCPDSMSFIRR
RLYDALQDNDWWSVTDLKLYPFGKAGFYNNTSTGESQVFCQHGVDECELN
ALHACIIETLDIRKAFNLIYCMLRSYSNELGPCSRSMGVDVSKARECKAS
RTTAEILAPYGKETLKLGISFVPTIVFENDFDPYDQRSIRNNFERHFCRQ
YLKKFNIKLPTCSAIL*

BS11545.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:37
Subject Length Description Subject Range Query Range Score Percent Strand
GILT3-PA 216 CG13822-PA 1..216 1..216 1161 100 Plus
GILT2-PA 207 CG10157-PA 7..206 11..212 381 38.5 Plus
CG41378-PB 228 CG41378-PB 11..195 3..178 183 28.6 Plus
CG41378-PC 196 CG41378-PC 13..163 30..178 182 31 Plus
CG41378-PD 205 CG41378-PD 22..172 30..178 182 31 Plus