Clone Sequence Records
BS11546.3prime Sequence
555 bp (554 high quality bases) assembled on 2006-05-08
> BS11546.3prime
ATGGTCTAGAAAGCTTCTAAGGACAGCACTCGCTCTCGTCGGGATTCTTC
TTGTTCCAGCCGAAGAAGAAGTAGCCCAGACCCAGTCCCAGGATCACTGC
CAGGCACAGCCAGTAGTTGAAGGTCATGAAGATCAGCATCAGCAGGTACG
AGATGACGATCTGCAGCAGGTTCAGCAGGGACTGGACGATGTGCGACGAG
GCGAACAAGCGCTGCCAGTAGGTCTGCTCCCTCGGCTCCGCCAGGGGAGC
TTCCGAGCAGCATCCTCCGGCTGCCGGAGCCTCGTTCTTCCTACGCTGCT
CCGCCGCCAGCTGCTCGCTTGCTCGACGGGCTTCCCTGCGCGCCAGTTGC
TGTCGCAGGAACTTGAGCGCCTCATACAGGAAGGACACCAGGAAGATGGC
CAGGGCGGAGAGCACGAACTCCGTCACAGTGGACGCCACCCATCCGCGCC
ACAAAATTCGCTCGCAGTGTCCAGCGTGGAACACCATGATCATAGGGCAG
GACTTGGCCGTGCTGGTGCTGTCATCCGAGCCGTGATCCATGTCGACTGA
TAACT
BS11546.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:11:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7459-PA | 525 | Ctr1B-RA | 1..525 | 541..17 | 2625 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:37:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ctr1B-RA | 953 | CG7459-RA | 126..651 | 541..16 | 2630 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:37:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8318437..8318903 | 482..16 | 2335 | 100 | Minus |
3R | 32079331 | 3R | 8317737..8317796 | 541..482 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 12:37:14 has no hits.
BS11546.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:12:32 Download gff for
BS11546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ctr1B-PA | 1..525 | 17..541 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:44:26 Download gff for
BS11546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7459-PA | 1..525 | 17..541 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:02:11 Download gff for
BS11546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ctr1B-RA | 117..651 | 16..549 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:42:29 Download gff for
BS11546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ctr1B-RA | 117..651 | 16..549 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:42:29 Download gff for
BS11546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8317728..8317796 | 482..549 | 94 | -> | Minus |
3R | 8318438..8318903 | 16..481 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:02:11 Download gff for
BS11546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4143450..4143518 | 482..549 | 94 | -> | Minus |
arm_3R | 4144160..4144625 | 16..481 | 100 | | Minus |
BS11546.5prime Sequence
555 bp (554 high quality bases) assembled on 2006-05-08
> BS11546.5prime
GAAGTTATCAGTCGACATGGATCACGGCTCGGATGACAGCACCAGCACGG
CCAAGTCCTGCCCTATGATCATGGTGTTCCACGCTGGACACTGCGAGCGA
ATTTTGTGGCGCGGATGGGTGGCGTCCACTGTGACGGAGTTCGTGCTCTC
CGCCCTGGCCATCTTCCTGGTGTCCTTCCTGTATGAGGCGCTCAAGTTCC
TGCGACAGCAACTGGCGCGCAGGGAAGCCCGTCGAGCAAGCGAGCAGCTG
GCGGCGGAGCAGCGTAGGAAGAACGAGGCTCCGGCAGCCGGAGGATGCTG
CTCGGAAGCTCCCCTGGCGGAGCCGAGGGAGCAGACCTACTGGCAGCGCT
TGTTCGCCTCGTCGCACATCGTCCAGTCCCTGCTGAACCTGCTGCAGATC
GTCATCTCGTACCTGCTGATGCTGATCTTCATGACCTTCAACTACTGGCT
GTGCCTGGCAGTGATCCTGGGACTGGGTCTGGGCTACTTCTTCTTCGGCT
GGAACAAGAAGAATCCCGACGAGAGCGAGTGCTGTCCTTAGAAGCTTTCT
AGACC
BS11546.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:11:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7459-PA | 525 | Ctr1B-RA | 1..525 | 17..541 | 2625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:51:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ctr1B-RA | 953 | CG7459-RA | 126..651 | 17..542 | 2630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:51:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8318437..8318903 | 76..542 | 2335 | 100 | Plus |
3R | 32079331 | 3R | 8317737..8317796 | 17..76 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:51:04 has no hits.
BS11546.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:12:33 Download gff for
BS11546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ctr1B-PA | 1..525 | 17..541 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:44:28 Download gff for
BS11546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7459-PA | 1..525 | 17..541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 23:29:24 Download gff for
BS11546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ctr1B-RA | 117..651 | 9..542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:26:57 Download gff for
BS11546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ctr1B-RA | 117..651 | 9..542 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:26:57 Download gff for
BS11546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8317728..8317796 | 9..76 | 94 | -> | Plus |
3R | 8318438..8318903 | 77..542 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 23:29:24 Download gff for
BS11546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4143450..4143518 | 9..76 | 94 | -> | Plus |
arm_3R | 4144160..4144625 | 77..542 | 100 | | Plus |
BS11546.complete Sequence
557 bp assembled on 2006-11-01
GenBank Submission: FJ636901
> BS11546.complete
GAAGTTATCAGTCGACATGGATCACGGCTCGGATGACAGCACCAGCACGG
CCAAGTCCTGCCCTATGATCATGGTGTTCCACGCTGGACACTGCGAGCGA
ATTTTGTGGCGCGGATGGGTGGCGTCCACTGTGACGGAGTTCGTGCTCTC
CGCCCTGGCCATCTTCCTGGTGTCCTTCCTGTATGAGGCGCTCAAGTTCC
TGCGACAGCAACTGGCGCGCAGGGAAGCCCGTCGAGCAAGCGAGCAGCTG
GCGGCGGAGCAGCGTAGGAAGAACGAGGCTCCGGCAGCCGGAGGATGCTG
CTCGGAAGCTCCCCTGGCGGAGCCGAGGGAGCAGACCTACTGGCAGCGCT
TGTTCGCCTCGTCGCACATCGTCCAGTCCCTGCTGAACCTGCTGCAGATC
GTCATCTCGTACCTGCTGATGCTGATCTTCATGACCTTCAACTACTGGCT
GTGCCTGGCAGTGATCCTGGGACTGGGTCTGGGCTACTTCTTCTTCGGCT
GGAACAAGAAGAATCCCGACGAGAGCGAGTGCTGTCCTTAGAAGCTTTCT
AGACCAT
BS11546.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:02:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ctr1B-RA | 525 | CG7459-PA | 1..525 | 17..541 | 2625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:02:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ctr1B-RA | 953 | CG7459-RA | 126..651 | 17..542 | 2630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:02:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8318437..8318903 | 76..542 | 2335 | 100 | Plus |
3R | 32079331 | 3R | 8317737..8317796 | 17..76 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:02:00 has no hits.
BS11546.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:07 Download gff for
BS11546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ctr1B-RA | 1..525 | 17..541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:08 Download gff for
BS11546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ctr1B-RA | 111..645 | 9..542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:03:58 Download gff for
BS11546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ctr1B-RA | 126..650 | 17..541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:11 Download gff for
BS11546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ctr1B-RA | 126..650 | 17..541 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:11:11 Download gff for
BS11546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8317737..8317796 | 17..76 | 100 | -> | Plus |
3R | 8318438..8318902 | 77..541 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:03:58 Download gff for
BS11546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4143459..4143518 | 17..76 | 100 | -> | Plus |
arm_3R | 4144160..4144624 | 77..541 | 100 | | Plus |
BS11546.pep Sequence
Translation from 16 to 540
> BS11546.pep
MDHGSDDSTSTAKSCPMIMVFHAGHCERILWRGWVASTVTEFVLSALAIF
LVSFLYEALKFLRQQLARREARRASEQLAAEQRRKNEAPAAGGCCSEAPL
AEPREQTYWQRLFASSHIVQSLLNLLQIVISYLLMLIFMTFNYWLCLAVI
LGLGLGYFFFGWNKKNPDESECCP*
BS11546.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ctr1B-PA | 174 | CG7459-PA | 1..174 | 1..174 | 920 | 100 | Plus |
Ctr1A-PB | 231 | CG3977-PB | 66..220 | 2..164 | 276 | 37.4 | Plus |
Ctr1A-PA | 231 | CG3977-PA | 66..220 | 2..164 | 276 | 37.4 | Plus |
Ctr1A-PD | 241 | CG3977-PD | 66..230 | 2..164 | 274 | 36.5 | Plus |
Ctr1A-PC | 241 | CG3977-PC | 66..230 | 2..164 | 274 | 36.5 | Plus |