Clone BS11546 Report

Search the DGRC for BS11546

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:115
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCtr1B-RA
Protein status:BS11546.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11546.3prime Sequence

555 bp (554 high quality bases) assembled on 2006-05-08

> BS11546.3prime
ATGGTCTAGAAAGCTTCTAAGGACAGCACTCGCTCTCGTCGGGATTCTTC
TTGTTCCAGCCGAAGAAGAAGTAGCCCAGACCCAGTCCCAGGATCACTGC
CAGGCACAGCCAGTAGTTGAAGGTCATGAAGATCAGCATCAGCAGGTACG
AGATGACGATCTGCAGCAGGTTCAGCAGGGACTGGACGATGTGCGACGAG
GCGAACAAGCGCTGCCAGTAGGTCTGCTCCCTCGGCTCCGCCAGGGGAGC
TTCCGAGCAGCATCCTCCGGCTGCCGGAGCCTCGTTCTTCCTACGCTGCT
CCGCCGCCAGCTGCTCGCTTGCTCGACGGGCTTCCCTGCGCGCCAGTTGC
TGTCGCAGGAACTTGAGCGCCTCATACAGGAAGGACACCAGGAAGATGGC
CAGGGCGGAGAGCACGAACTCCGTCACAGTGGACGCCACCCATCCGCGCC
ACAAAATTCGCTCGCAGTGTCCAGCGTGGAACACCATGATCATAGGGCAG
GACTTGGCCGTGCTGGTGCTGTCATCCGAGCCGTGATCCATGTCGACTGA
TAACT

BS11546.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:11:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG7459-PA 525 Ctr1B-RA 1..525 541..17 2625 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:37:17
Subject Length Description Subject Range Query Range Score Percent Strand
Ctr1B-RA 953 CG7459-RA 126..651 541..16 2630 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:37:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8318437..8318903 482..16 2335 100 Minus
3R 32079331 3R 8317737..8317796 541..482 300 100 Minus
Blast to na_te.dros performed on 2015-02-06 12:37:14 has no hits.

BS11546.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:12:32 Download gff for BS11546.3prime
Subject Subject Range Query Range Percent Splice Strand
Ctr1B-PA 1..525 17..541 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:44:26 Download gff for BS11546.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7459-PA 1..525 17..541 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:02:11 Download gff for BS11546.3prime
Subject Subject Range Query Range Percent Splice Strand
Ctr1B-RA 117..651 16..549 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:42:29 Download gff for BS11546.3prime
Subject Subject Range Query Range Percent Splice Strand
Ctr1B-RA 117..651 16..549 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:42:29 Download gff for BS11546.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8317728..8317796 482..549 94 -> Minus
3R 8318438..8318903 16..481 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:02:11 Download gff for BS11546.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4143450..4143518 482..549 94 -> Minus
arm_3R 4144160..4144625 16..481 100   Minus

BS11546.5prime Sequence

555 bp (554 high quality bases) assembled on 2006-05-08

> BS11546.5prime
GAAGTTATCAGTCGACATGGATCACGGCTCGGATGACAGCACCAGCACGG
CCAAGTCCTGCCCTATGATCATGGTGTTCCACGCTGGACACTGCGAGCGA
ATTTTGTGGCGCGGATGGGTGGCGTCCACTGTGACGGAGTTCGTGCTCTC
CGCCCTGGCCATCTTCCTGGTGTCCTTCCTGTATGAGGCGCTCAAGTTCC
TGCGACAGCAACTGGCGCGCAGGGAAGCCCGTCGAGCAAGCGAGCAGCTG
GCGGCGGAGCAGCGTAGGAAGAACGAGGCTCCGGCAGCCGGAGGATGCTG
CTCGGAAGCTCCCCTGGCGGAGCCGAGGGAGCAGACCTACTGGCAGCGCT
TGTTCGCCTCGTCGCACATCGTCCAGTCCCTGCTGAACCTGCTGCAGATC
GTCATCTCGTACCTGCTGATGCTGATCTTCATGACCTTCAACTACTGGCT
GTGCCTGGCAGTGATCCTGGGACTGGGTCTGGGCTACTTCTTCTTCGGCT
GGAACAAGAAGAATCCCGACGAGAGCGAGTGCTGTCCTTAGAAGCTTTCT
AGACC

BS11546.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:11:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG7459-PA 525 Ctr1B-RA 1..525 17..541 2625 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
Ctr1B-RA 953 CG7459-RA 126..651 17..542 2630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:51:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8318437..8318903 76..542 2335 100 Plus
3R 32079331 3R 8317737..8317796 17..76 300 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:51:04 has no hits.

BS11546.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:12:33 Download gff for BS11546.5prime
Subject Subject Range Query Range Percent Splice Strand
Ctr1B-PA 1..525 17..541 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:44:28 Download gff for BS11546.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7459-PA 1..525 17..541 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 23:29:24 Download gff for BS11546.5prime
Subject Subject Range Query Range Percent Splice Strand
Ctr1B-RA 117..651 9..542 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:26:57 Download gff for BS11546.5prime
Subject Subject Range Query Range Percent Splice Strand
Ctr1B-RA 117..651 9..542 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:26:57 Download gff for BS11546.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8317728..8317796 9..76 94 -> Plus
3R 8318438..8318903 77..542 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 23:29:24 Download gff for BS11546.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4143450..4143518 9..76 94 -> Plus
arm_3R 4144160..4144625 77..542 100   Plus

BS11546.complete Sequence

557 bp assembled on 2006-11-01

GenBank Submission: FJ636901

> BS11546.complete
GAAGTTATCAGTCGACATGGATCACGGCTCGGATGACAGCACCAGCACGG
CCAAGTCCTGCCCTATGATCATGGTGTTCCACGCTGGACACTGCGAGCGA
ATTTTGTGGCGCGGATGGGTGGCGTCCACTGTGACGGAGTTCGTGCTCTC
CGCCCTGGCCATCTTCCTGGTGTCCTTCCTGTATGAGGCGCTCAAGTTCC
TGCGACAGCAACTGGCGCGCAGGGAAGCCCGTCGAGCAAGCGAGCAGCTG
GCGGCGGAGCAGCGTAGGAAGAACGAGGCTCCGGCAGCCGGAGGATGCTG
CTCGGAAGCTCCCCTGGCGGAGCCGAGGGAGCAGACCTACTGGCAGCGCT
TGTTCGCCTCGTCGCACATCGTCCAGTCCCTGCTGAACCTGCTGCAGATC
GTCATCTCGTACCTGCTGATGCTGATCTTCATGACCTTCAACTACTGGCT
GTGCCTGGCAGTGATCCTGGGACTGGGTCTGGGCTACTTCTTCTTCGGCT
GGAACAAGAAGAATCCCGACGAGAGCGAGTGCTGTCCTTAGAAGCTTTCT
AGACCAT

BS11546.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:02:01
Subject Length Description Subject Range Query Range Score Percent Strand
Ctr1B-RA 525 CG7459-PA 1..525 17..541 2625 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:02:02
Subject Length Description Subject Range Query Range Score Percent Strand
Ctr1B-RA 953 CG7459-RA 126..651 17..542 2630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:02:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8318437..8318903 76..542 2335 100 Plus
3R 32079331 3R 8317737..8317796 17..76 300 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:02:00 has no hits.

BS11546.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:07 Download gff for BS11546.complete
Subject Subject Range Query Range Percent Splice Strand
Ctr1B-RA 1..525 17..541 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:08 Download gff for BS11546.complete
Subject Subject Range Query Range Percent Splice Strand
Ctr1B-RA 111..645 9..542 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:03:58 Download gff for BS11546.complete
Subject Subject Range Query Range Percent Splice Strand
Ctr1B-RA 126..650 17..541 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:11 Download gff for BS11546.complete
Subject Subject Range Query Range Percent Splice Strand
Ctr1B-RA 126..650 17..541 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:11:11 Download gff for BS11546.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8317737..8317796 17..76 100 -> Plus
3R 8318438..8318902 77..541 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:03:58 Download gff for BS11546.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4143459..4143518 17..76 100 -> Plus
arm_3R 4144160..4144624 77..541 100   Plus

BS11546.pep Sequence

Translation from 16 to 540

> BS11546.pep
MDHGSDDSTSTAKSCPMIMVFHAGHCERILWRGWVASTVTEFVLSALAIF
LVSFLYEALKFLRQQLARREARRASEQLAAEQRRKNEAPAAGGCCSEAPL
AEPREQTYWQRLFASSHIVQSLLNLLQIVISYLLMLIFMTFNYWLCLAVI
LGLGLGYFFFGWNKKNPDESECCP*

BS11546.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:35
Subject Length Description Subject Range Query Range Score Percent Strand
Ctr1B-PA 174 CG7459-PA 1..174 1..174 920 100 Plus
Ctr1A-PB 231 CG3977-PB 66..220 2..164 276 37.4 Plus
Ctr1A-PA 231 CG3977-PA 66..220 2..164 276 37.4 Plus
Ctr1A-PD 241 CG3977-PD 66..230 2..164 274 36.5 Plus
Ctr1A-PC 241 CG3977-PC 66..230 2..164 274 36.5 Plus