Clone Sequence Records
BS11550.3prime Sequence
871 bp (788 high quality bases) assembled on 2006-05-08
> BS11550.3prime
ATGGTCTAGAAAGCTTTTAAGTTTCACTTCGTTTGTATACAATATTGCTG
TAGTCTCTCCGAATTCCACAGCTTGCCTTAAAGTCAAAGACACGCATATT
GTGATCGGTGGCCACGAACATATATTGGCTATCACAGGCGAGGCTGTACA
CTGGCGACAAGCCATTATGACTTCGCGTCCTTCCCGGAAAGTACAATTGT
ACGTATTTCTTCATTCTTATATCGTAAAGGTTGACCCGTGCATGTCTGTT
GGTGCCAACCAGCACCGCGTGCAGACCATCATACTCCAAGGAGTAGAAGG
AGGAGTCGAACGGATCATCCCAAATGGCTACATCGCGATCCACGCGTCTG
TCAAACATACGAAACGTGCTATCGAAGTTGGCCGTGAAAATGACCTGGTC
ATCTTTCAATTTCAGGTCGTAAATTGACATTGTTTTGGAACTAAACACCA
ATTCCTCGCCACTTTCAACATGGACTGCCCTCAAGGCCTGGCGACCGTTG
TCAGTGTATAGTCCACCATACAGCCACTGGCCATCCGAACTGAGTTCCAG
AGACCTAAAGGCGTGCGGCAGATGCATCACCTGATCAAAATGCGTCATTC
CAAACTCCTGCGCACGCTGCCACAGTCTGCAGCAGTGATCTGTGCTGGTT
GCGTACAGATCCTTGACAAAGTCTACGCAGTACAAGTATTCGTTGGCCGG
ATGCATCCTCTGCTCCGTCATCACCATGCTATCGGTGTCGTAGTGGAAGC
ACGATCCACAAACCCTTCCCGCGAATATGGTTTCATTCTTTTTGACGAAA
TCGGAGATGTCGGTCTGTGCGGACGTACAGATCTCCTCGTCGAAGCGACG
ATGCAGTGCATCGCAGCTGGA
BS11550.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:11:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33969-PA | 1233 | CG33969-RA | 379..1233 | 871..17 | 4275 | 100 | Minus |
CG33969-PB | 1233 | CG33969-RB | 379..1233 | 871..17 | 4275 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:36:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33969-RC | 1656 | CG33969-RC | 442..1296 | 871..17 | 4275 | 100 | Minus |
CG33969-RA | 1665 | CG33969-RA | 451..1305 | 871..17 | 4275 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:36:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20392045..20392491 | 17..463 | 2235 | 100 | Plus |
3L | 28110227 | 3L | 20392641..20393050 | 462..871 | 2050 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:36:18 has no hits.
BS11550.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:12:41 Download gff for
BS11550.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33969-PA | 380..1233 | 17..870 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:44:39 Download gff for
BS11550.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33969-PB | 380..1233 | 17..870 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:25:38 Download gff for
BS11550.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33969-RA | 452..1312 | 10..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:43 Download gff for
BS11550.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33969-RA | 452..1312 | 10..870 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:43 Download gff for
BS11550.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20392641..20393049 | 462..870 | 100 | | Plus |
3L | 20392038..20392489 | 10..461 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:25:38 Download gff for
BS11550.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20385138..20385589 | 10..461 | 99 | <- | Plus |
arm_3L | 20385741..20386149 | 462..870 | 100 | | Plus |
BS11550.5prime Sequence
891 bp (777 high quality bases) assembled on 2006-05-08
> BS11550.5prime
GAAGTTATCAGTCGACATGATGAGCTCCCGCATGAGCTTGAAGGATCTGA
CCATCGAATGCCTGCTCCTCATATTCGACTATTGCTCGGAGGGGGACCTA
CTGTGCCTGTGCCGGGCGGACCCGGCTCTGGAGTATATTATTGAAGCCTA
CTACTTCTACCCACTGGCCTACGATTTGCTGCTCTGTGGCCACCGGAATA
ATCCAAGGATCGAACAGAGAAACCGAAGACGCCTGAAAAACTATGAACGC
ATCGAGCTGTCAAGGAACTGGGTTAGTGGCACCTATTTCGAACGACCATA
CTTCCACCATGCCCAGATGTTCCCCACCAAACTGTGCCTGGAGGCCGACT
TTCTGTACATCACACATGCCTGCTATCTGCGCAAGTACCGGCGGTCCAGC
TGCGATGCACTGCATCGTCGCTTCGACGAGGAGATCTGTACGTCCGCACA
GACCGACATCTCCGATTTCGTCAAAAAGAATGAAACCATATTCGCGGGAA
GGGTTTGTGGATCGTGCTTCCACTACGACACCGATAGCATGGTGATGACG
GAGCAGAGGATGCATCCGGCCAACGAATACTTGTACTGCGTAGACTTTGT
CAAGGATCTGTACGCAACCAGCACAGATCACTGCTGCAGACTGTGGCAGC
GTGCGCAGGAGTTTGGAATGACGCATTTTGATCAGGTGATGCATCTGCCG
CACGCCTTTAGGTCTCTGGAACTCAGTTCGGATGGCCAGTGGCTGTATGG
TGGACTATACACTGACAACGGTCGCCAGGCCTTGAGGGCAGTCCATGTTG
AAAGTGGCGAGGAATTGGTGTTTAGTTCCAAAACAATGTCAATTTACGAC
CTGAAATTGAAAGATGACCCAGTCATTTTCACGGCCACTTT
BS11550.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:11:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33969-PA | 1233 | CG33969-RA | 1..871 | 17..887 | 4305 | 99.7 | Plus |
CG33969-PB | 1233 | CG33969-RB | 1..871 | 17..887 | 4305 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:16:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33969-RA | 1665 | CG33969-RA | 73..943 | 17..887 | 4325 | 99.8 | Plus |
CG33969-RC | 1656 | CG33969-RC | 73..934 | 17..887 | 4180 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:16:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20392641..20393227 | 804..218 | 2935 | 100 | Minus |
3L | 28110227 | 3L | 20393279..20393481 | 219..17 | 1015 | 100 | Minus |
3L | 28110227 | 3L | 20392407..20392491 | 887..803 | 395 | 97.6 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:16:03 has no hits.
BS11550.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:12:42 Download gff for
BS11550.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33969-PA | 1..875 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:44:41 Download gff for
BS11550.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33969-PB | 1..875 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:38:42 Download gff for
BS11550.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33969-RA | 70..947 | 14..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:12:48 Download gff for
BS11550.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33969-RA | 70..947 | 14..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:12:48 Download gff for
BS11550.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20392402..20392489 | 805..891 | 95 | <- | Minus |
3L | 20392641..20393225 | 220..804 | 100 | <- | Minus |
3L | 20393279..20393484 | 14..219 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:38:42 Download gff for
BS11550.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20385502..20385589 | 805..891 | 95 | <- | Minus |
arm_3L | 20385741..20386325 | 220..804 | 100 | <- | Minus |
arm_3L | 20386379..20386584 | 14..219 | 99 | | Minus |
BS11550.complete Sequence
1265 bp assembled on 2006-11-01
GenBank Submission: FJ636902
> BS11550.complete
GAAGTTATCAGTCGACATGATGAGCTCCCGCATGAGCTTGAAGGATCTGA
CCATCGAATGCCTGCTCCTCATATTCGACTATTGCTCGGAGGGGGACCTA
CTGTGCCTGTGCCGGGCGGACCCGGCTCTGGAGTATATTATTGAAGCCTA
CTACTTCTACCCACTGGCCTACGATTTGCTGCTCTGTGGCCACCGGAATA
ATCCAAGGATCGAACAGAGAAACCGAAGACGCCTGAAAAACTATGAACGC
ATCGAGCTGTCAAGGAACTGGGTTAGTGGCACCTATTTCGAACGACCATA
CTTCCACCATGCCCAGATGTTCCCCACCAAACTGTGCCTGGAGGCCGACT
TTCTGTACATCACACATGCCTGCTATCTGCGCAAGTACCGGCGGTCCAGC
TGCGATGCACTGCATCGTCGCTTCGACGAGGAGATCTGTACGTCCGCACA
GACCGACATCTCCGATTTCGTCAAAAAGAATGAAACCATATTCGCGGGAA
GGGTTTGTGGATCGTGCTTCCACTACGACACCGATAGCATGGTGATGACG
GAGCAGAGGATGCATCCGGCCAACGAATACTTGTACTGCGTAGACTTTGT
CAAGGATCTGTACGCAACCAGCACAGATCACTGCTGCAGACTGTGGCAGC
GTGCGCAGGAGTTTGGAATGACGCATTTTGATCAGGTGATGCATCTGCCG
CACGCCTTTAGGTCTCTGGAACTCAGTTCGGATGGCCAGTGGCTGTATGG
TGGACTATACACTGACAACGGTCGCCAGGCCTTGAGGGCAGTCCATGTTG
AAAGTGGCGAGGAATTGGTGTTTAGTTCCAAAACAATGTCAATTTACGAC
CTGAAATTGAAAGATGACCAGGTCATTTTCACGGCCAACTTCGATAGCAC
GTTTCGTATGTTTGACAGACGCGTGGATCGCGATGTAGCCATTTGGGATG
ATCCGTTCGACTCCTCCTTCTACTCCTTGGAGTATGATGGTCTGCACGCG
GTGCTGGTTGGCACCAACAGACATGCACGGGTCAACCTTTACGATATAAG
AATGAAGAAATACGTACAATTGTACTTTCCGGGAAGGACGCGAAGTCATA
ATGGCTTGTCGCCAGTGTACAGCCTCGCCTGTGATAGCCAATATATGTTC
GTGGCCACCGATCACAATATGCGTGTCTTTGACTTTAAGGCAAGCTGTGG
AATTCGGAGAGACTACAGCAATATTGTATACAAACGAAGTGAAACTTAAA
AGCTTTCTAGACCAT
BS11550.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:27:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33969-RA | 1233 | CG33969-PA | 1..1233 | 17..1249 | 6165 | 100 | Plus |
CG33969-RC | 1224 | CG33969-PC | 1..1224 | 17..1249 | 5995 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:27:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33969-RA | 1665 | CG33969-RA | 73..1305 | 17..1249 | 6165 | 100 | Plus |
CG33969-RC | 1656 | CG33969-RC | 73..1296 | 17..1249 | 5995 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:27:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20392641..20393227 | 804..218 | 2935 | 100 | Minus |
3L | 28110227 | 3L | 20392045..20392491 | 1249..803 | 2235 | 100 | Minus |
3L | 28110227 | 3L | 20393279..20393481 | 219..17 | 1015 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:27:41 has no hits.
BS11550.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:10 Download gff for
BS11550.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33969-RB | 1..1233 | 17..1249 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:11 Download gff for
BS11550.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33969-RB | 65..1307 | 14..1256 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:15:41 Download gff for
BS11550.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33969-RA | 73..1303 | 17..1247 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:10 Download gff for
BS11550.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33969-RB | 65..1307 | 14..1256 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:11:07 Download gff for
BS11550.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33969-RA | 73..1303 | 17..1247 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:11:07 Download gff for
BS11550.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20393279..20393481 | 17..219 | 100 | | Minus |
3L | 20392047..20392489 | 805..1247 | 100 | <- | Minus |
3L | 20392641..20393225 | 220..804 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:15:41 Download gff for
BS11550.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20385147..20385589 | 805..1247 | 100 | <- | Minus |
arm_3L | 20385741..20386325 | 220..804 | 100 | <- | Minus |
arm_3L | 20386379..20386581 | 17..219 | 100 | | Minus |
BS11550.pep Sequence
Translation from 16 to 1248
> BS11550.pep
MMSSRMSLKDLTIECLLLIFDYCSEGDLLCLCRADPALEYIIEAYYFYPL
AYDLLLCGHRNNPRIEQRNRRRLKNYERIELSRNWVSGTYFERPYFHHAQ
MFPTKLCLEADFLYITHACYLRKYRRSSCDALHRRFDEEICTSAQTDISD
FVKKNETIFAGRVCGSCFHYDTDSMVMTEQRMHPANEYLYCVDFVKDLYA
TSTDHCCRLWQRAQEFGMTHFDQVMHLPHAFRSLELSSDGQWLYGGLYTD
NGRQALRAVHVESGEELVFSSKTMSIYDLKLKDDQVIFTANFDSTFRMFD
RRVDRDVAIWDDPFDSSFYSLEYDGLHAVLVGTNRHARVNLYDIRMKKYV
QLYFPGRTRSHNGLSPVYSLACDSQYMFVATDHNMRVFDFKASCGIRRDY
SNIVYKRSET*
BS11550.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33969-PA | 410 | CG33969-PA | 1..410 | 1..410 | 2221 | 100 | Plus |
CG33969-PC | 407 | CG33969-PC | 1..407 | 1..410 | 2191 | 99.3 | Plus |