Clone BS11550 Report

Search the DGRC for BS11550

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:115
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptCG33969-RA
Protein status:BS11550.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11550.3prime Sequence

871 bp (788 high quality bases) assembled on 2006-05-08

> BS11550.3prime
ATGGTCTAGAAAGCTTTTAAGTTTCACTTCGTTTGTATACAATATTGCTG
TAGTCTCTCCGAATTCCACAGCTTGCCTTAAAGTCAAAGACACGCATATT
GTGATCGGTGGCCACGAACATATATTGGCTATCACAGGCGAGGCTGTACA
CTGGCGACAAGCCATTATGACTTCGCGTCCTTCCCGGAAAGTACAATTGT
ACGTATTTCTTCATTCTTATATCGTAAAGGTTGACCCGTGCATGTCTGTT
GGTGCCAACCAGCACCGCGTGCAGACCATCATACTCCAAGGAGTAGAAGG
AGGAGTCGAACGGATCATCCCAAATGGCTACATCGCGATCCACGCGTCTG
TCAAACATACGAAACGTGCTATCGAAGTTGGCCGTGAAAATGACCTGGTC
ATCTTTCAATTTCAGGTCGTAAATTGACATTGTTTTGGAACTAAACACCA
ATTCCTCGCCACTTTCAACATGGACTGCCCTCAAGGCCTGGCGACCGTTG
TCAGTGTATAGTCCACCATACAGCCACTGGCCATCCGAACTGAGTTCCAG
AGACCTAAAGGCGTGCGGCAGATGCATCACCTGATCAAAATGCGTCATTC
CAAACTCCTGCGCACGCTGCCACAGTCTGCAGCAGTGATCTGTGCTGGTT
GCGTACAGATCCTTGACAAAGTCTACGCAGTACAAGTATTCGTTGGCCGG
ATGCATCCTCTGCTCCGTCATCACCATGCTATCGGTGTCGTAGTGGAAGC
ACGATCCACAAACCCTTCCCGCGAATATGGTTTCATTCTTTTTGACGAAA
TCGGAGATGTCGGTCTGTGCGGACGTACAGATCTCCTCGTCGAAGCGACG
ATGCAGTGCATCGCAGCTGGA

BS11550.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:11:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG33969-PA 1233 CG33969-RA 379..1233 871..17 4275 100 Minus
CG33969-PB 1233 CG33969-RB 379..1233 871..17 4275 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG33969-RC 1656 CG33969-RC 442..1296 871..17 4275 100 Minus
CG33969-RA 1665 CG33969-RA 451..1305 871..17 4275 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:36:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20392045..20392491 17..463 2235 100 Plus
3L 28110227 3L 20392641..20393050 462..871 2050 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:36:18 has no hits.

BS11550.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:12:41 Download gff for BS11550.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33969-PA 380..1233 17..870 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:44:39 Download gff for BS11550.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33969-PB 380..1233 17..870 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:25:38 Download gff for BS11550.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33969-RA 452..1312 10..870 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:43 Download gff for BS11550.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33969-RA 452..1312 10..870 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:43 Download gff for BS11550.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20392641..20393049 462..870 100   Plus
3L 20392038..20392489 10..461 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:25:38 Download gff for BS11550.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20385138..20385589 10..461 99 <- Plus
arm_3L 20385741..20386149 462..870 100   Plus

BS11550.5prime Sequence

891 bp (777 high quality bases) assembled on 2006-05-08

> BS11550.5prime
GAAGTTATCAGTCGACATGATGAGCTCCCGCATGAGCTTGAAGGATCTGA
CCATCGAATGCCTGCTCCTCATATTCGACTATTGCTCGGAGGGGGACCTA
CTGTGCCTGTGCCGGGCGGACCCGGCTCTGGAGTATATTATTGAAGCCTA
CTACTTCTACCCACTGGCCTACGATTTGCTGCTCTGTGGCCACCGGAATA
ATCCAAGGATCGAACAGAGAAACCGAAGACGCCTGAAAAACTATGAACGC
ATCGAGCTGTCAAGGAACTGGGTTAGTGGCACCTATTTCGAACGACCATA
CTTCCACCATGCCCAGATGTTCCCCACCAAACTGTGCCTGGAGGCCGACT
TTCTGTACATCACACATGCCTGCTATCTGCGCAAGTACCGGCGGTCCAGC
TGCGATGCACTGCATCGTCGCTTCGACGAGGAGATCTGTACGTCCGCACA
GACCGACATCTCCGATTTCGTCAAAAAGAATGAAACCATATTCGCGGGAA
GGGTTTGTGGATCGTGCTTCCACTACGACACCGATAGCATGGTGATGACG
GAGCAGAGGATGCATCCGGCCAACGAATACTTGTACTGCGTAGACTTTGT
CAAGGATCTGTACGCAACCAGCACAGATCACTGCTGCAGACTGTGGCAGC
GTGCGCAGGAGTTTGGAATGACGCATTTTGATCAGGTGATGCATCTGCCG
CACGCCTTTAGGTCTCTGGAACTCAGTTCGGATGGCCAGTGGCTGTATGG
TGGACTATACACTGACAACGGTCGCCAGGCCTTGAGGGCAGTCCATGTTG
AAAGTGGCGAGGAATTGGTGTTTAGTTCCAAAACAATGTCAATTTACGAC
CTGAAATTGAAAGATGACCCAGTCATTTTCACGGCCACTTT

BS11550.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:11:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG33969-PA 1233 CG33969-RA 1..871 17..887 4305 99.7 Plus
CG33969-PB 1233 CG33969-RB 1..871 17..887 4305 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:16:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG33969-RA 1665 CG33969-RA 73..943 17..887 4325 99.8 Plus
CG33969-RC 1656 CG33969-RC 73..934 17..887 4180 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:16:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20392641..20393227 804..218 2935 100 Minus
3L 28110227 3L 20393279..20393481 219..17 1015 100 Minus
3L 28110227 3L 20392407..20392491 887..803 395 97.6 Minus
Blast to na_te.dros performed on 2015-02-13 08:16:03 has no hits.

BS11550.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:12:42 Download gff for BS11550.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33969-PA 1..875 17..891 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:44:41 Download gff for BS11550.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33969-PB 1..875 17..891 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:38:42 Download gff for BS11550.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33969-RA 70..947 14..891 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:12:48 Download gff for BS11550.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33969-RA 70..947 14..891 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:12:48 Download gff for BS11550.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20392402..20392489 805..891 95 <- Minus
3L 20392641..20393225 220..804 100 <- Minus
3L 20393279..20393484 14..219 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:38:42 Download gff for BS11550.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20385502..20385589 805..891 95 <- Minus
arm_3L 20385741..20386325 220..804 100 <- Minus
arm_3L 20386379..20386584 14..219 99   Minus

BS11550.complete Sequence

1265 bp assembled on 2006-11-01

GenBank Submission: FJ636902

> BS11550.complete
GAAGTTATCAGTCGACATGATGAGCTCCCGCATGAGCTTGAAGGATCTGA
CCATCGAATGCCTGCTCCTCATATTCGACTATTGCTCGGAGGGGGACCTA
CTGTGCCTGTGCCGGGCGGACCCGGCTCTGGAGTATATTATTGAAGCCTA
CTACTTCTACCCACTGGCCTACGATTTGCTGCTCTGTGGCCACCGGAATA
ATCCAAGGATCGAACAGAGAAACCGAAGACGCCTGAAAAACTATGAACGC
ATCGAGCTGTCAAGGAACTGGGTTAGTGGCACCTATTTCGAACGACCATA
CTTCCACCATGCCCAGATGTTCCCCACCAAACTGTGCCTGGAGGCCGACT
TTCTGTACATCACACATGCCTGCTATCTGCGCAAGTACCGGCGGTCCAGC
TGCGATGCACTGCATCGTCGCTTCGACGAGGAGATCTGTACGTCCGCACA
GACCGACATCTCCGATTTCGTCAAAAAGAATGAAACCATATTCGCGGGAA
GGGTTTGTGGATCGTGCTTCCACTACGACACCGATAGCATGGTGATGACG
GAGCAGAGGATGCATCCGGCCAACGAATACTTGTACTGCGTAGACTTTGT
CAAGGATCTGTACGCAACCAGCACAGATCACTGCTGCAGACTGTGGCAGC
GTGCGCAGGAGTTTGGAATGACGCATTTTGATCAGGTGATGCATCTGCCG
CACGCCTTTAGGTCTCTGGAACTCAGTTCGGATGGCCAGTGGCTGTATGG
TGGACTATACACTGACAACGGTCGCCAGGCCTTGAGGGCAGTCCATGTTG
AAAGTGGCGAGGAATTGGTGTTTAGTTCCAAAACAATGTCAATTTACGAC
CTGAAATTGAAAGATGACCAGGTCATTTTCACGGCCAACTTCGATAGCAC
GTTTCGTATGTTTGACAGACGCGTGGATCGCGATGTAGCCATTTGGGATG
ATCCGTTCGACTCCTCCTTCTACTCCTTGGAGTATGATGGTCTGCACGCG
GTGCTGGTTGGCACCAACAGACATGCACGGGTCAACCTTTACGATATAAG
AATGAAGAAATACGTACAATTGTACTTTCCGGGAAGGACGCGAAGTCATA
ATGGCTTGTCGCCAGTGTACAGCCTCGCCTGTGATAGCCAATATATGTTC
GTGGCCACCGATCACAATATGCGTGTCTTTGACTTTAAGGCAAGCTGTGG
AATTCGGAGAGACTACAGCAATATTGTATACAAACGAAGTGAAACTTAAA
AGCTTTCTAGACCAT

BS11550.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:27:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG33969-RA 1233 CG33969-PA 1..1233 17..1249 6165 100 Plus
CG33969-RC 1224 CG33969-PC 1..1224 17..1249 5995 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:27:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG33969-RA 1665 CG33969-RA 73..1305 17..1249 6165 100 Plus
CG33969-RC 1656 CG33969-RC 73..1296 17..1249 5995 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:27:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20392641..20393227 804..218 2935 100 Minus
3L 28110227 3L 20392045..20392491 1249..803 2235 100 Minus
3L 28110227 3L 20393279..20393481 219..17 1015 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:27:41 has no hits.

BS11550.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:10 Download gff for BS11550.complete
Subject Subject Range Query Range Percent Splice Strand
CG33969-RB 1..1233 17..1249 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:11 Download gff for BS11550.complete
Subject Subject Range Query Range Percent Splice Strand
CG33969-RB 65..1307 14..1256 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:15:41 Download gff for BS11550.complete
Subject Subject Range Query Range Percent Splice Strand
CG33969-RA 73..1303 17..1247 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:10 Download gff for BS11550.complete
Subject Subject Range Query Range Percent Splice Strand
CG33969-RB 65..1307 14..1256 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:11:07 Download gff for BS11550.complete
Subject Subject Range Query Range Percent Splice Strand
CG33969-RA 73..1303 17..1247 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:11:07 Download gff for BS11550.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20393279..20393481 17..219 100   Minus
3L 20392047..20392489 805..1247 100 <- Minus
3L 20392641..20393225 220..804 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:15:41 Download gff for BS11550.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20385147..20385589 805..1247 100 <- Minus
arm_3L 20385741..20386325 220..804 100 <- Minus
arm_3L 20386379..20386581 17..219 100   Minus

BS11550.pep Sequence

Translation from 16 to 1248

> BS11550.pep
MMSSRMSLKDLTIECLLLIFDYCSEGDLLCLCRADPALEYIIEAYYFYPL
AYDLLLCGHRNNPRIEQRNRRRLKNYERIELSRNWVSGTYFERPYFHHAQ
MFPTKLCLEADFLYITHACYLRKYRRSSCDALHRRFDEEICTSAQTDISD
FVKKNETIFAGRVCGSCFHYDTDSMVMTEQRMHPANEYLYCVDFVKDLYA
TSTDHCCRLWQRAQEFGMTHFDQVMHLPHAFRSLELSSDGQWLYGGLYTD
NGRQALRAVHVESGEELVFSSKTMSIYDLKLKDDQVIFTANFDSTFRMFD
RRVDRDVAIWDDPFDSSFYSLEYDGLHAVLVGTNRHARVNLYDIRMKKYV
QLYFPGRTRSHNGLSPVYSLACDSQYMFVATDHNMRVFDFKASCGIRRDY
SNIVYKRSET*

BS11550.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG33969-PA 410 CG33969-PA 1..410 1..410 2221 100 Plus
CG33969-PC 407 CG33969-PC 1..407 1..410 2191 99.3 Plus