Clone Sequence Records
BS11552.3prime Sequence
819 bp (788 high quality bases) assembled on 2006-05-08
> BS11552.3prime
ATGGTCTAGAAAGCTTTTACTGCTTGGATCTGCGCTTGCTGCTGCTGCCG
CTTTCGTGATGCTTGGAGGAACTGCTCTTGGAGCTGGATTTGGTGCTGGA
GCCGCTGCGTCGCGATGAGGTGCCACTGCTGTTGTGCTTCTCCATTCCGC
CGATGGCGCTAAGAGAAGACGCCGCCGTGGACTTAGAGGATCGTTCTTCC
TTGTGCGATTTGGACGACGACGAAGAGGAGGACTTGTGGCCATGCTTGCT
GCTGCTACTGCTGCTGGCATTCGTGGAACTGCTGGGCTCGGGCCGGTAGA
AGGGTGACGAGGAGTTGGAAGAGTTCGATGAGCGCGACGACGCGACCGAC
GATTTGGCTTTGCTGGTCAACGGCATGGGTTCGTCGGCTATGAAGACAGT
TGGCGTTACGGCCGCTGCAGAGGATGTTGTCCTCCCGCTGCTCGTTGGCT
TGTTGCAGCACGTGTCGCACTGCCAGTTCTGCTCCTGGTCATCGGCCGCC
TCCTCCTTGGTTATGGGCGGCTTGTGGCACTCCTGATGGTACATGGCACC
GCACTTGGAGCACTCAATCAGCCGATTGGTGGCCGTGAAAACCATCTCGC
CGCACACGCAGCAATTGAGGTCGCCAAAGTCGCCGGTGTCACCGGTGTTA
ACTATTCCCACGGCGCTTAGACCGTCATCCGAATCCGCAATCGTGTCCAC
CGAATCGGAGGGCTCCTTGTCCGGTGAGTTGGTCAAATTGATGATCTCGT
CCGCATTGATGGGCTGCTGCGGGGGCGTGGCAGCACGTCCCGAAAAGTTC
GCTTCATCCTCCAGCATCC
BS11552.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:11:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5491-PA | 987 | CG5491-RA | 185..987 | 819..17 | 3990 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:54:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
IntS12-RA | 1184 | CG5491-RA | 279..1081 | 819..17 | 4000 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:54:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26863654..26864456 | 819..17 | 4000 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-08 12:54:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6828 | 108..15 | 143 | 65.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2420 | 141..36 | 142 | 63.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2531 | 284..72 | 132 | 56.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6825 | 141..31 | 131 | 64.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2391 | 96..13 | 128 | 62.8 | Minus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 971..1001 | 276..246 | 110 | 83.9 | Minus |
BS11552.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:12:45 Download gff for
BS11552.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5491-PA | 185..987 | 17..819 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:44:45 Download gff for
BS11552.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5491-PA | 185..987 | 17..819 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:26 Download gff for
BS11552.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
IntS12-RA | 279..1084 | 10..819 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:24:43 Download gff for
BS11552.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
IntS12-RA | 279..1084 | 10..819 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:24:43 Download gff for
BS11552.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26863654..26864459 | 10..819 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:26 Download gff for
BS11552.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22689376..22690181 | 10..819 | 99 | | Minus |
BS11552.5prime Sequence
823 bp (796 high quality bases) assembled on 2006-05-08
> BS11552.5prime
GAAGTTATCAGTCGACATGGCCGCAAATATAGCCGCCGCTGCTGCAGCTG
CCCAAGAAGTGGATCCCGTGCTGAAGAAGGCCATCAAGTTGCTGCACTCG
AGTAATCCCACCTCGGCGGCCGAACTGCGTCTGCTTTTGGACGAGGCTTT
GAAGGCGCGTTTTGGTCCGGAGAAAAGTTTGACCAACAACATGACGCCAC
GGATGCTGGAGGATGAAGCGAACTTTTCCGGACGTGCTGCCACGCCCCCG
CAGCAGCCCATCAATGCGGACGAGATCATCAATTTGACCAACTCACCGGA
CAAGGAGCCCTCCGATTCGGTGGACACGATTGCGGATTCGGATGACGGTC
TAAGCGCCGTGGGAATAGTTAACACCGGTGACACCGGCGACTTTGGCGAC
CTCAATTGCTGCGTGTGCGGCGAGATGGTTTTCACGGCCACCAATCGGCT
GATTGAGTGCTCCAAGTGCGGTGCCATGTACCATCAGGAGTGCCACAAGC
CGCCCATAACCAAGGAGGAGGCGGCCGATGACCAGGAGCAGAACTGGCAG
TGCGACACGTGCTGCAACAAGCCAACGAGCAGCGGGAGGACAACATCCTC
TGCAGCGGCCGTAACGCCAACTGTCTTCATAGCCGACGAACCCATGCCGT
TGACCAGCAAAGCCAAATCGTCGGTCGCGTCGTCGCGCTCATCGAACTCT
TCCAACTCCTCGTCACCCTTCTACCGGCCCGAGCCCAGCAGTTCCACGAA
TGCCAGCAGCAGTAGCAGCAGCAAGCATGGCCACAAGTCCTCCTCTTCGC
CGTCGTCCAAATCGCACAAGGAA
BS11552.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:11:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5491-PA | 987 | CG5491-RA | 1..807 | 17..823 | 4010 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:22:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
IntS12-RA | 1184 | CG5491-RA | 95..901 | 17..823 | 4020 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:22:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26863470..26864276 | 17..823 | 4020 | 99.9 | Plus |
Blast to na_te.dros performed 2015-02-13 02:22:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 971..1001 | 744..774 | 110 | 83.9 | Plus |
BS11552.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:12:47 Download gff for
BS11552.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5491-PA | 1..805 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:44:47 Download gff for
BS11552.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5491-PA | 1..805 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:10:39 Download gff for
BS11552.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
IntS12-RA | 95..901 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:23:20 Download gff for
BS11552.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
IntS12-RA | 95..901 | 17..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:23:20 Download gff for
BS11552.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26863470..26864276 | 17..823 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:10:39 Download gff for
BS11552.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22689192..22689998 | 17..823 | 99 | | Plus |
BS11552.complete Sequence
1019 bp assembled on 2006-11-01
GenBank Submission: FJ636903
> BS11552.complete
GAAGTTATCAGTCGACATGGCCGCAAATATAGCCGCCGCTGCTGCAGCTG
CCCAAGAAGTGGATCCCGTGCTGAAGAAGGCCATCAAGTTGCTGCACTCG
AGTAATCCCACCTCGGCGGCCGAACTGCGTCTGCTTTTGGACGAGGCTTT
GAAGGCGCGTTTTGGTCCGGAGAAAAGTTTGACCAACAACATGACGCCAC
GGATGCTGGAGGATGAAGCGAACTTTTCCGGACGTGCTGCCACGCCCCCG
CAGCAGCCCATCAATGCGGACGAGATCATCAATTTGACCAACTCACCGGA
CAAGGAGCCCTCCGATTCGGTGGACACGATTGCGGATTCGGATGACGGTC
TAAGCGCCGTGGGAATAGTTAACACCGGTGACACCGGCGACTTTGGCGAC
CTCAATTGCTGCGTGTGCGGCGAGATGGTTTTCACGGCCACCAATCGGCT
GATTGAGTGCTCCAAGTGCGGTGCCATGTACCATCAGGAGTGCCACAAGC
CGCCCATAACCAAGGAGGAGGCGGCCGATGACCAGGAGCAGAACTGGCAG
TGCGACACGTGCTGCAACAAGCCAACGAGCAGCGGGAGGACAACATCCTC
TGCAGCGGCCGTAACGCCAACTGTCTTCATAGCCGACGAACCCATGCCGT
TGACCAGCAAAGCCAAATCGTCGGTCGCGTCGTCGCGCTCATCGAACTCT
TCCAACTCCTCGTCACCCTTCTACCGGCCCGAGCCCAGCAGTTCCACGAA
TGCCAGCAGCAGTAGCAGCAGCAAGCATGGCCACAAGTCCTCCTCTTCGT
CGTCGTCCAAATCGCACAAGGAAGAACGATCCTCTAAGTCCACGGCGGCG
TCTTCTCTTAGCGCCATCGGCGGAATGGAGAAGCACAACAGCAGTGGCAC
CTCATCGCGACGCAGCGGCTCCAGCACCAAATCCAGCTCCAAGAGCAGTT
CCTCCAAGCATCACGAAAGCGGCAGCAGCAGCAAGCGCAGATCCAAGCAG
TAAAAGCTTTCTAGACCAT
BS11552.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:07:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
IntS12-RA | 987 | CG5491-PA | 1..987 | 17..1003 | 4935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
IntS12-RA | 1184 | CG5491-RA | 95..1081 | 17..1003 | 4935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26863470..26864456 | 17..1003 | 4935 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 01:07:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6828 | 912..1005 | 143 | 65.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2420 | 879..984 | 142 | 63.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2531 | 736..948 | 132 | 56.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6825 | 879..989 | 131 | 64.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2391 | 924..1007 | 128 | 62.8 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 971..1001 | 744..774 | 110 | 83.9 | Plus |
BS11552.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:11 Download gff for
BS11552.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5491-RA | 1..987 | 17..1003 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:13 Download gff for
BS11552.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5491-RA | 73..1062 | 17..1010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:39:47 Download gff for
BS11552.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
IntS12-RA | 95..1079 | 17..1001 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:11 Download gff for
BS11552.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5491-RA | 73..1062 | 17..1010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:15 Download gff for
BS11552.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
IntS12-RA | 95..1079 | 17..1001 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:15 Download gff for
BS11552.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26863470..26864454 | 17..1001 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:39:47 Download gff for
BS11552.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22689192..22690176 | 17..1001 | 100 | | Plus |
BS11552.pep Sequence
Translation from 16 to 1002
> BS11552.pep
MAANIAAAAAAAQEVDPVLKKAIKLLHSSNPTSAAELRLLLDEALKARFG
PEKSLTNNMTPRMLEDEANFSGRAATPPQQPINADEIINLTNSPDKEPSD
SVDTIADSDDGLSAVGIVNTGDTGDFGDLNCCVCGEMVFTATNRLIECSK
CGAMYHQECHKPPITKEEAADDQEQNWQCDTCCNKPTSSGRTTSSAAAVT
PTVFIADEPMPLTSKAKSSVASSRSSNSSNSSSPFYRPEPSSSTNASSSS
SSKHGHKSSSSSSSKSHKEERSSKSTAASSLSAIGGMEKHNSSGTSSRRS
GSSTKSSSKSSSSKHHESGSSSKRRSKQ*
BS11552.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
IntS12-PA | 328 | CG5491-PA | 1..328 | 1..328 | 1665 | 100 | Plus |
PNUTS-PA | 628 | CG33526-PA | 296..428 | 172..323 | 184 | 34.9 | Plus |
PNUTS-PB | 628 | CG33526-PB | 296..428 | 172..323 | 184 | 34.9 | Plus |
PNUTS-PE | 1135 | CG33526-PE | 296..428 | 172..323 | 184 | 34.9 | Plus |
PNUTS-PD | 1135 | CG33526-PD | 296..428 | 172..323 | 184 | 34.9 | Plus |
PNUTS-PA | 628 | CG33526-PA | 305..425 | 213..327 | 170 | 43 | Plus |
PNUTS-PB | 628 | CG33526-PB | 305..425 | 213..327 | 170 | 43 | Plus |
PNUTS-PE | 1135 | CG33526-PE | 305..425 | 213..327 | 170 | 43 | Plus |
PNUTS-PA | 628 | CG33526-PA | 260..407 | 189..327 | 169 | 37.7 | Plus |
PNUTS-PB | 628 | CG33526-PB | 260..407 | 189..327 | 169 | 37.7 | Plus |
PNUTS-PE | 1135 | CG33526-PE | 260..407 | 189..327 | 169 | 37.7 | Plus |