Clone BS11552 Report

Search the DGRC for BS11552

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:115
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptIntS12-RA
Protein status:BS11552.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11552.3prime Sequence

819 bp (788 high quality bases) assembled on 2006-05-08

> BS11552.3prime
ATGGTCTAGAAAGCTTTTACTGCTTGGATCTGCGCTTGCTGCTGCTGCCG
CTTTCGTGATGCTTGGAGGAACTGCTCTTGGAGCTGGATTTGGTGCTGGA
GCCGCTGCGTCGCGATGAGGTGCCACTGCTGTTGTGCTTCTCCATTCCGC
CGATGGCGCTAAGAGAAGACGCCGCCGTGGACTTAGAGGATCGTTCTTCC
TTGTGCGATTTGGACGACGACGAAGAGGAGGACTTGTGGCCATGCTTGCT
GCTGCTACTGCTGCTGGCATTCGTGGAACTGCTGGGCTCGGGCCGGTAGA
AGGGTGACGAGGAGTTGGAAGAGTTCGATGAGCGCGACGACGCGACCGAC
GATTTGGCTTTGCTGGTCAACGGCATGGGTTCGTCGGCTATGAAGACAGT
TGGCGTTACGGCCGCTGCAGAGGATGTTGTCCTCCCGCTGCTCGTTGGCT
TGTTGCAGCACGTGTCGCACTGCCAGTTCTGCTCCTGGTCATCGGCCGCC
TCCTCCTTGGTTATGGGCGGCTTGTGGCACTCCTGATGGTACATGGCACC
GCACTTGGAGCACTCAATCAGCCGATTGGTGGCCGTGAAAACCATCTCGC
CGCACACGCAGCAATTGAGGTCGCCAAAGTCGCCGGTGTCACCGGTGTTA
ACTATTCCCACGGCGCTTAGACCGTCATCCGAATCCGCAATCGTGTCCAC
CGAATCGGAGGGCTCCTTGTCCGGTGAGTTGGTCAAATTGATGATCTCGT
CCGCATTGATGGGCTGCTGCGGGGGCGTGGCAGCACGTCCCGAAAAGTTC
GCTTCATCCTCCAGCATCC

BS11552.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:11:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG5491-PA 987 CG5491-RA 185..987 819..17 3990 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:54:56
Subject Length Description Subject Range Query Range Score Percent Strand
IntS12-RA 1184 CG5491-RA 279..1081 819..17 4000 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26863654..26864456 819..17 4000 99.9 Minus
Blast to na_te.dros performed 2015-02-08 12:54:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6736..6828 108..15 143 65.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2420 141..36 142 63.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2328..2531 284..72 132 56.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6825 141..31 131 64.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2391 96..13 128 62.8 Minus
gypsy11 4428 gypsy11 GYPSY11 4428bp 971..1001 276..246 110 83.9 Minus

BS11552.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:12:45 Download gff for BS11552.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5491-PA 185..987 17..819 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:44:45 Download gff for BS11552.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5491-PA 185..987 17..819 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:26 Download gff for BS11552.3prime
Subject Subject Range Query Range Percent Splice Strand
IntS12-RA 279..1084 10..819 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:24:43 Download gff for BS11552.3prime
Subject Subject Range Query Range Percent Splice Strand
IntS12-RA 279..1084 10..819 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:24:43 Download gff for BS11552.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26863654..26864459 10..819 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:26 Download gff for BS11552.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22689376..22690181 10..819 99   Minus

BS11552.5prime Sequence

823 bp (796 high quality bases) assembled on 2006-05-08

> BS11552.5prime
GAAGTTATCAGTCGACATGGCCGCAAATATAGCCGCCGCTGCTGCAGCTG
CCCAAGAAGTGGATCCCGTGCTGAAGAAGGCCATCAAGTTGCTGCACTCG
AGTAATCCCACCTCGGCGGCCGAACTGCGTCTGCTTTTGGACGAGGCTTT
GAAGGCGCGTTTTGGTCCGGAGAAAAGTTTGACCAACAACATGACGCCAC
GGATGCTGGAGGATGAAGCGAACTTTTCCGGACGTGCTGCCACGCCCCCG
CAGCAGCCCATCAATGCGGACGAGATCATCAATTTGACCAACTCACCGGA
CAAGGAGCCCTCCGATTCGGTGGACACGATTGCGGATTCGGATGACGGTC
TAAGCGCCGTGGGAATAGTTAACACCGGTGACACCGGCGACTTTGGCGAC
CTCAATTGCTGCGTGTGCGGCGAGATGGTTTTCACGGCCACCAATCGGCT
GATTGAGTGCTCCAAGTGCGGTGCCATGTACCATCAGGAGTGCCACAAGC
CGCCCATAACCAAGGAGGAGGCGGCCGATGACCAGGAGCAGAACTGGCAG
TGCGACACGTGCTGCAACAAGCCAACGAGCAGCGGGAGGACAACATCCTC
TGCAGCGGCCGTAACGCCAACTGTCTTCATAGCCGACGAACCCATGCCGT
TGACCAGCAAAGCCAAATCGTCGGTCGCGTCGTCGCGCTCATCGAACTCT
TCCAACTCCTCGTCACCCTTCTACCGGCCCGAGCCCAGCAGTTCCACGAA
TGCCAGCAGCAGTAGCAGCAGCAAGCATGGCCACAAGTCCTCCTCTTCGC
CGTCGTCCAAATCGCACAAGGAA

BS11552.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:11:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG5491-PA 987 CG5491-RA 1..807 17..823 4010 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:22:52
Subject Length Description Subject Range Query Range Score Percent Strand
IntS12-RA 1184 CG5491-RA 95..901 17..823 4020 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:22:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26863470..26864276 17..823 4020 99.9 Plus
Blast to na_te.dros performed 2015-02-13 02:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 971..1001 744..774 110 83.9 Plus

BS11552.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:12:47 Download gff for BS11552.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5491-PA 1..805 17..821 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:44:47 Download gff for BS11552.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5491-PA 1..805 17..821 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:10:39 Download gff for BS11552.5prime
Subject Subject Range Query Range Percent Splice Strand
IntS12-RA 95..901 17..823 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:23:20 Download gff for BS11552.5prime
Subject Subject Range Query Range Percent Splice Strand
IntS12-RA 95..901 17..823 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:23:20 Download gff for BS11552.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26863470..26864276 17..823 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:10:39 Download gff for BS11552.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22689192..22689998 17..823 99   Plus

BS11552.complete Sequence

1019 bp assembled on 2006-11-01

GenBank Submission: FJ636903

> BS11552.complete
GAAGTTATCAGTCGACATGGCCGCAAATATAGCCGCCGCTGCTGCAGCTG
CCCAAGAAGTGGATCCCGTGCTGAAGAAGGCCATCAAGTTGCTGCACTCG
AGTAATCCCACCTCGGCGGCCGAACTGCGTCTGCTTTTGGACGAGGCTTT
GAAGGCGCGTTTTGGTCCGGAGAAAAGTTTGACCAACAACATGACGCCAC
GGATGCTGGAGGATGAAGCGAACTTTTCCGGACGTGCTGCCACGCCCCCG
CAGCAGCCCATCAATGCGGACGAGATCATCAATTTGACCAACTCACCGGA
CAAGGAGCCCTCCGATTCGGTGGACACGATTGCGGATTCGGATGACGGTC
TAAGCGCCGTGGGAATAGTTAACACCGGTGACACCGGCGACTTTGGCGAC
CTCAATTGCTGCGTGTGCGGCGAGATGGTTTTCACGGCCACCAATCGGCT
GATTGAGTGCTCCAAGTGCGGTGCCATGTACCATCAGGAGTGCCACAAGC
CGCCCATAACCAAGGAGGAGGCGGCCGATGACCAGGAGCAGAACTGGCAG
TGCGACACGTGCTGCAACAAGCCAACGAGCAGCGGGAGGACAACATCCTC
TGCAGCGGCCGTAACGCCAACTGTCTTCATAGCCGACGAACCCATGCCGT
TGACCAGCAAAGCCAAATCGTCGGTCGCGTCGTCGCGCTCATCGAACTCT
TCCAACTCCTCGTCACCCTTCTACCGGCCCGAGCCCAGCAGTTCCACGAA
TGCCAGCAGCAGTAGCAGCAGCAAGCATGGCCACAAGTCCTCCTCTTCGT
CGTCGTCCAAATCGCACAAGGAAGAACGATCCTCTAAGTCCACGGCGGCG
TCTTCTCTTAGCGCCATCGGCGGAATGGAGAAGCACAACAGCAGTGGCAC
CTCATCGCGACGCAGCGGCTCCAGCACCAAATCCAGCTCCAAGAGCAGTT
CCTCCAAGCATCACGAAAGCGGCAGCAGCAGCAAGCGCAGATCCAAGCAG
TAAAAGCTTTCTAGACCAT

BS11552.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
IntS12-RA 987 CG5491-PA 1..987 17..1003 4935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
IntS12-RA 1184 CG5491-RA 95..1081 17..1003 4935 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26863470..26864456 17..1003 4935 100 Plus
Blast to na_te.dros performed 2014-11-28 01:07:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6736..6828 912..1005 143 65.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2420 879..984 142 63.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2328..2531 736..948 132 56.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6825 879..989 131 64.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2391 924..1007 128 62.8 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 971..1001 744..774 110 83.9 Plus

BS11552.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:11 Download gff for BS11552.complete
Subject Subject Range Query Range Percent Splice Strand
CG5491-RA 1..987 17..1003 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:13 Download gff for BS11552.complete
Subject Subject Range Query Range Percent Splice Strand
CG5491-RA 73..1062 17..1010 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:39:47 Download gff for BS11552.complete
Subject Subject Range Query Range Percent Splice Strand
IntS12-RA 95..1079 17..1001 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:11 Download gff for BS11552.complete
Subject Subject Range Query Range Percent Splice Strand
CG5491-RA 73..1062 17..1010 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:15 Download gff for BS11552.complete
Subject Subject Range Query Range Percent Splice Strand
IntS12-RA 95..1079 17..1001 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:15 Download gff for BS11552.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26863470..26864454 17..1001 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:39:47 Download gff for BS11552.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22689192..22690176 17..1001 100   Plus

BS11552.pep Sequence

Translation from 16 to 1002

> BS11552.pep
MAANIAAAAAAAQEVDPVLKKAIKLLHSSNPTSAAELRLLLDEALKARFG
PEKSLTNNMTPRMLEDEANFSGRAATPPQQPINADEIINLTNSPDKEPSD
SVDTIADSDDGLSAVGIVNTGDTGDFGDLNCCVCGEMVFTATNRLIECSK
CGAMYHQECHKPPITKEEAADDQEQNWQCDTCCNKPTSSGRTTSSAAAVT
PTVFIADEPMPLTSKAKSSVASSRSSNSSNSSSPFYRPEPSSSTNASSSS
SSKHGHKSSSSSSSKSHKEERSSKSTAASSLSAIGGMEKHNSSGTSSRRS
GSSTKSSSKSSSSKHHESGSSSKRRSKQ*

BS11552.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:30
Subject Length Description Subject Range Query Range Score Percent Strand
IntS12-PA 328 CG5491-PA 1..328 1..328 1665 100 Plus
PNUTS-PA 628 CG33526-PA 296..428 172..323 184 34.9 Plus
PNUTS-PB 628 CG33526-PB 296..428 172..323 184 34.9 Plus
PNUTS-PE 1135 CG33526-PE 296..428 172..323 184 34.9 Plus
PNUTS-PD 1135 CG33526-PD 296..428 172..323 184 34.9 Plus
PNUTS-PA 628 CG33526-PA 305..425 213..327 170 43 Plus
PNUTS-PB 628 CG33526-PB 305..425 213..327 170 43 Plus
PNUTS-PE 1135 CG33526-PE 305..425 213..327 170 43 Plus
PNUTS-PA 628 CG33526-PA 260..407 189..327 169 37.7 Plus
PNUTS-PB 628 CG33526-PB 260..407 189..327 169 37.7 Plus
PNUTS-PE 1135 CG33526-PE 260..407 189..327 169 37.7 Plus