Clone BS11560 Report

Search the DGRC for BS11560

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:115
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptLip4-RA
Protein status:BS11560.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11560.3prime Sequence

808 bp (806 high quality bases) assembled on 2006-05-08

> BS11560.3prime
ATGGTCTAGAAAGCTTTTAGATAATTGAATTCTCATGATTTCGCATTATT
TCCAGCATTCGATCCCACAAAAGTTCCCGGGCATCGATGCCCCAAATGAA
ATCCAAGTGGTTGAACTCCTTGTCGTCCACCAGATATTTCTCCACGACAT
TGGGCAGCTTGCGGTTCAGCATTTCCACATCCTCCGGCGGAGCCAGCCAA
TCGTTTTGGCCATAATATAGTGCCACCTTGGCCCGAACATTCTCCAGGTG
GTAGGATGGCGGGTCAATGGTTCCGTAGATCCAGTGGTTTCTGAGCCATC
CGTGATCATACTGCCGGAAACCGCCAGATCTGTTGAGCTGTCCAAAATGC
TGCATCTGCTTGGTGGAGGCTCCGGCCGGAGAATGACCCACGATTACCGG
CAGCATAGTCTCGTTCAGCTGGAGCTTGTCGAATCCGGTGGTCAGGAAGA
TGACGTTTGAACAAATCTCTTTCGTAATAGTGGTCTCGTCGCAGATGATC
CGGTTGAACATGCTGATGAACTCATTCTTAGGCAAAAACTCGTGAACGCC
AATCAGCTTGAGGACCAAGCTCACCGATAGATGCCACTCGGCCAGGAAGT
TGACCACCGGACTGCGGCAGTGCTTGAGGAATGCCACCGGTGCCAATCCC
TGCATCAGAATGATCTTGTCCATATACTCGGGCTTCTCGCTGGCCATGAT
CCAGAACACAACGGTTCCCTGGGAGTGACCAATGTAGTGCAATTGGCTTA
CGCCCGTGGAATTGAGGATGTAGTCCATTGTGGCGGGTATATCATGCTTT
CCCATCTC

BS11560.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG6113-PA 1305 CG6113-RA 514..1305 808..17 3960 100 Minus
CG18301-PA 1269 CG18301-RA 505..531 742..716 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:41:51
Subject Length Description Subject Range Query Range Score Percent Strand
Lip4-RC 1936 CG6113-RC 774..1566 808..16 3965 100 Minus
Lip4-RA 1580 CG6113-RA 636..1428 808..16 3965 100 Minus
Lip4-RB 1861 CG6113-RB 923..1709 808..16 3865 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:41:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10530856..10531408 568..16 2765 100 Minus
2L 23513712 2L 10530436..10530675 808..569 1200 100 Minus
2L 23513712 2L 10532757..10532872 742..627 280 82.8 Minus
2L 23513712 2L 10533301..10533416 247..132 250 81 Minus
Blast to na_te.dros performed on 2015-02-12 18:41:49 has no hits.

BS11560.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:12:58 Download gff for BS11560.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6113-PA 514..1305 17..808 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:45:04 Download gff for BS11560.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6113-PA 514..1305 17..808 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:45:15 Download gff for BS11560.3prime
Subject Subject Range Query Range Percent Splice Strand
Lip4-RA 636..1428 16..808 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:28:53 Download gff for BS11560.3prime
Subject Subject Range Query Range Percent Splice Strand
Lip4-RA 636..1428 16..808 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:28:53 Download gff for BS11560.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10530436..10530675 569..808 100 -> Minus
2L 10530856..10531408 16..568 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:45:15 Download gff for BS11560.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10530436..10530675 569..808 100 -> Minus
arm_2L 10530856..10531408 16..568 100   Minus

BS11560.5prime Sequence

852 bp (761 high quality bases) assembled on 2006-05-08

> BS11560.5prime
GAAGTTATCAGTCGACATGTCGGTGAAATTGCTAATTGTAGCGCTTAGTT
TGTGCCTCCTGCAGTCGGGCATCGTCGAGGGTATATCATTATCACTCGGA
GATATAACCCTCTTTAATGTTAACTTCAAAACACCAACTTTTTTGGGAAG
ATCCGTGGCGGTGGATAGCAATGTGCGGTTGGAGAACGATGTGGATCCCA
ATATTCAGGAGGATTCACACTTGAATACCTACAGTCTGATAAAAAAGTAC
GGCTACCCGGCGGAGAATCACACCTTGGAGACGGATGATGGATACATCCT
CACCTTGCACAGGATCGCTAGACCGGGAGCAACGCCAGTGCTTCTGGTGC
ACGGACTACTGGATAGCTCAGCCACTTGGGTGATGATGGGACCGAACAAG
GGACTTGGTTACCTGCTCTACGATCAGGGGTACGATGTCTGGATGGCCAA
TGTTCGTGGCAATACGTACTCGAGAAAGCATGTTAAGTATAGCACCCACC
ATGCCAAGTTCTGGGACTTTACATTCCACGAGATGGGAAAGCATGATATA
CCCGCCACAATGGACTACATCCTCAATTCCACGGGCGTAAGCCAATTGCA
CTACATTGGTCACTCCCAGGGAACCGTTGTGTTCTGGATCATGGCCAGCG
AGAAGCCCGAGTATATGGACAAGATCATTCTGATGCAGGGATTGGCACCG
GTGGCATTCCTCAAGCACTGCCGCAGTCCGGTGGTCAACTTCCTGGCCGA
GTGGCATCTATCGGTGAGCTTGGTCCTCAAGCTGATTGGCGTTCACGAGT
TTTTGCCTAAGAATGAGTTCATCAGCATGTTCAACCGGATCATCTGCGAC
AA

BS11560.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:11:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG6113-PA 1305 CG6113-RA 1..834 17..850 4170 100 Plus
CG18301-PA 1269 CG18301-RA 505..531 596..622 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:29:43
Subject Length Description Subject Range Query Range Score Percent Strand
Lip4-RA 1580 CG6113-RA 123..956 17..850 4170 100 Plus
Lip4-RB 1861 CG6113-RB 410..1237 17..850 4070 99.3 Plus
Lip4-RC 1936 CG6113-RC 285..1094 41..850 4050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:29:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10530313..10530675 407..769 1815 100 Plus
2L 23513712 2L 10529537..10529749 17..229 1065 100 Plus
2L 23513712 2L 10530078..10530257 230..409 900 100 Plus
2L 23513712 2L 10530856..10530936 770..850 405 100 Plus
2L 23513712 2L 10532757..10532872 596..711 280 82.8 Plus
Blast to na_te.dros performed on 2015-02-12 19:29:41 has no hits.

BS11560.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:12:59 Download gff for BS11560.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6113-PA 1..834 17..850 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:45:06 Download gff for BS11560.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6113-PA 1..834 17..850 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:18:12 Download gff for BS11560.5prime
Subject Subject Range Query Range Percent Splice Strand
Lip4-RA 123..956 17..850 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:37:26 Download gff for BS11560.5prime
Subject Subject Range Query Range Percent Splice Strand
Lip4-RA 123..956 17..850 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:37:26 Download gff for BS11560.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10529537..10529749 17..229 100 -> Plus
2L 10530078..10530255 230..407 100 -> Plus
2L 10530314..10530675 408..769 100 -> Plus
2L 10530856..10530936 770..850 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:18:12 Download gff for BS11560.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10529537..10529749 17..229 100 -> Plus
arm_2L 10530078..10530255 230..407 100 -> Plus
arm_2L 10530856..10530936 770..850 100   Plus
arm_2L 10530314..10530675 408..769 100 -> Plus

BS11560.complete Sequence

1337 bp assembled on 2006-11-01

GenBank Submission: FJ636904

> BS11560.complete
GAAGTTATCAGTCGACATGTCGGTGAAATTGCTAATTGTAGCGCTTAGTT
TGTGCCTCCTGCAGTCGGGCATCGTCGAGGGTATATCATTATCACTCGGA
GATATAACCCTCTTTAATGTTAACTTCAAAACACCAACTTTTTTGGGAAG
ATCCGTGGCGGTGGATAGCAATGTGCGGTTGGAGAACGATGTGGATCCCA
ATATTCAGGAGGATTCACACTTGAATACCTACAGTCTGATAAAAAAGTAC
GGCTACCCGGCGGAGAATCACACCTTGGAGACGGATGATGGATACATCCT
CACCTTGCACAGGATCGCTAGACCGGGAGCAACGCCAGTGCTTCTGGTGC
ACGGACTACTGGATAGCTCAGCCACTTGGGTGATGATGGGACCGAACAAG
GGACTTGGTTACCTGCTCTACGATCAGGGGTACGATGTCTGGATGGCCAA
TGTTCGTGGCAATACGTACTCGAGAAAGCATGTTAAGTATAGCACCCACC
ATGCCAAGTTCTGGGACTTTACATTCCACGAGATGGGAAAGCATGATATA
CCCGCCACAATGGACTACATCCTCAATTCCACGGGCGTAAGCCAATTGCA
CTACATTGGTCACTCCCAGGGAACCGTTGTGTTCTGGATCATGGCCAGCG
AGAAGCCCGAGTATATGGACAAGATCATTCTGATGCAGGGATTGGCACCG
GTGGCATTCCTCAAGCACTGCCGCAGTCCGGTGGTCAACTTCCTGGCCGA
GTGGCATCTATCGGTGAGCTTGGTCCTCAAGCTGATTGGCGTTCACGAGT
TTTTGCCTAAGAATGAGTTCATCAGCATGTTCAACCGGATCATCTGCGAC
GAGACCACTATTACGAAAGAGATTTGTTCAAACGTCATCTTCCTGACCAC
CGGATTCGACAAGCTCCAGCTGAACGAGACTATGCTGCCGGTAATCGTGG
GTCATTCTCCGGCCGGAGCCTCCACCAAGCAGATGCAGCATTTTGGACAG
CTCAACAGATCTGGCGGTTTCCGGCAGTATGATCACGGATGGCTCAGAAA
CCACTGGATCTACGGAACCATTGACCCGCCATCCTACCACCTGGAGAATG
TTCGGGCCAAGGTGGCACTATATTATGGCCAAAACGATTGGCTGGCTCCG
CCGGAGGATGTGGAAATGCTGAACCGCAAGCTGCCCAATGTCGTGGAGAA
ATATCTGGTGGACGACAAGGAGTTCAACCACTTGGATTTCATTTGGGGCA
TCGATGCCCGGGAACTTTTGTGGGATCGAATGCTGGAAATAATGCGAAAT
CATGAGAATTCAATTATCTAAAAGCTTTCTAGACCAT

BS11560.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:54:53
Subject Length Description Subject Range Query Range Score Percent Strand
Lip4-RA 1305 CG6113-PA 1..1305 17..1321 6525 100 Plus
Lip4-RC 1347 CG6113-PC 67..1347 41..1321 6405 100 Plus
Lip4-RB 1299 CG6113-PB 1..1299 17..1321 6400 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:54:54
Subject Length Description Subject Range Query Range Score Percent Strand
Lip4-RA 1580 CG6113-RA 123..1428 17..1322 6530 100 Plus
Lip4-RC 1936 CG6113-RC 285..1566 41..1322 6410 100 Plus
Lip4-RB 1861 CG6113-RB 410..1709 17..1322 6405 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:54:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10530856..10531408 770..1322 2765 100 Plus
2L 23513712 2L 10530313..10530675 407..769 1815 100 Plus
2L 23513712 2L 10529537..10529749 17..229 1065 100 Plus
2L 23513712 2L 10530078..10530257 230..409 900 100 Plus
2L 23513712 2L 10532757..10532872 596..711 280 82.8 Plus
2L 23513712 2L 10533301..10533416 1091..1206 250 81 Plus
Blast to na_te.dros performed on 2014-11-27 19:54:52 has no hits.

BS11560.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:12 Download gff for BS11560.complete
Subject Subject Range Query Range Percent Splice Strand
CG6113-RA 1..1305 17..1321 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:15 Download gff for BS11560.complete
Subject Subject Range Query Range Percent Splice Strand
Lip4-RA 121..1426 17..1322 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:33 Download gff for BS11560.complete
Subject Subject Range Query Range Percent Splice Strand
Lip4-RA 123..1425 17..1319 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:13 Download gff for BS11560.complete
Subject Subject Range Query Range Percent Splice Strand
CG6113-RA 121..1426 17..1322 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:40 Download gff for BS11560.complete
Subject Subject Range Query Range Percent Splice Strand
Lip4-RA 123..1425 17..1319 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:40 Download gff for BS11560.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10529537..10529749 17..229 100 -> Plus
2L 10530078..10530255 230..407 100 -> Plus
2L 10530314..10530675 408..769 100 -> Plus
2L 10530856..10531405 770..1319 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:33 Download gff for BS11560.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10529537..10529749 17..229 100 -> Plus
arm_2L 10530078..10530255 230..407 100 -> Plus
arm_2L 10530314..10530675 408..769 100 -> Plus
arm_2L 10530856..10531405 770..1319 100   Plus

BS11560.pep Sequence

Translation from 16 to 1320

> BS11560.pep
MSVKLLIVALSLCLLQSGIVEGISLSLGDITLFNVNFKTPTFLGRSVAVD
SNVRLENDVDPNIQEDSHLNTYSLIKKYGYPAENHTLETDDGYILTLHRI
ARPGATPVLLVHGLLDSSATWVMMGPNKGLGYLLYDQGYDVWMANVRGNT
YSRKHVKYSTHHAKFWDFTFHEMGKHDIPATMDYILNSTGVSQLHYIGHS
QGTVVFWIMASEKPEYMDKIILMQGLAPVAFLKHCRSPVVNFLAEWHLSV
SLVLKLIGVHEFLPKNEFISMFNRIICDETTITKEICSNVIFLTTGFDKL
QLNETMLPVIVGHSPAGASTKQMQHFGQLNRSGGFRQYDHGWLRNHWIYG
TIDPPSYHLENVRAKVALYYGQNDWLAPPEDVEMLNRKLPNVVEKYLVDD
KEFNHLDFIWGIDARELLWDRMLEIMRNHENSII*

BS11560.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:27
Subject Length Description Subject Range Query Range Score Percent Strand
Lip4-PA 434 CG6113-PA 1..434 1..434 2321 100 Plus
Lip4-PB 432 CG6113-PB 1..432 1..434 2300 99.5 Plus
Lip4-PC 448 CG6113-PC 17..448 3..434 2293 98.8 Plus
CG18301-PA 422 CG18301-PA 34..401 59..428 1271 60 Plus
CG31871-PA 531 CG31871-PA 10..439 4..431 1097 46.4 Plus