Clone Sequence Records
BS11560.3prime Sequence
808 bp (806 high quality bases) assembled on 2006-05-08
> BS11560.3prime
ATGGTCTAGAAAGCTTTTAGATAATTGAATTCTCATGATTTCGCATTATT
TCCAGCATTCGATCCCACAAAAGTTCCCGGGCATCGATGCCCCAAATGAA
ATCCAAGTGGTTGAACTCCTTGTCGTCCACCAGATATTTCTCCACGACAT
TGGGCAGCTTGCGGTTCAGCATTTCCACATCCTCCGGCGGAGCCAGCCAA
TCGTTTTGGCCATAATATAGTGCCACCTTGGCCCGAACATTCTCCAGGTG
GTAGGATGGCGGGTCAATGGTTCCGTAGATCCAGTGGTTTCTGAGCCATC
CGTGATCATACTGCCGGAAACCGCCAGATCTGTTGAGCTGTCCAAAATGC
TGCATCTGCTTGGTGGAGGCTCCGGCCGGAGAATGACCCACGATTACCGG
CAGCATAGTCTCGTTCAGCTGGAGCTTGTCGAATCCGGTGGTCAGGAAGA
TGACGTTTGAACAAATCTCTTTCGTAATAGTGGTCTCGTCGCAGATGATC
CGGTTGAACATGCTGATGAACTCATTCTTAGGCAAAAACTCGTGAACGCC
AATCAGCTTGAGGACCAAGCTCACCGATAGATGCCACTCGGCCAGGAAGT
TGACCACCGGACTGCGGCAGTGCTTGAGGAATGCCACCGGTGCCAATCCC
TGCATCAGAATGATCTTGTCCATATACTCGGGCTTCTCGCTGGCCATGAT
CCAGAACACAACGGTTCCCTGGGAGTGACCAATGTAGTGCAATTGGCTTA
CGCCCGTGGAATTGAGGATGTAGTCCATTGTGGCGGGTATATCATGCTTT
CCCATCTC
BS11560.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:11:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6113-PA | 1305 | CG6113-RA | 514..1305 | 808..17 | 3960 | 100 | Minus |
CG18301-PA | 1269 | CG18301-RA | 505..531 | 742..716 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:41:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lip4-RC | 1936 | CG6113-RC | 774..1566 | 808..16 | 3965 | 100 | Minus |
Lip4-RA | 1580 | CG6113-RA | 636..1428 | 808..16 | 3965 | 100 | Minus |
Lip4-RB | 1861 | CG6113-RB | 923..1709 | 808..16 | 3865 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:41:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10530856..10531408 | 568..16 | 2765 | 100 | Minus |
2L | 23513712 | 2L | 10530436..10530675 | 808..569 | 1200 | 100 | Minus |
2L | 23513712 | 2L | 10532757..10532872 | 742..627 | 280 | 82.8 | Minus |
2L | 23513712 | 2L | 10533301..10533416 | 247..132 | 250 | 81 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:41:49 has no hits.
BS11560.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:12:58 Download gff for
BS11560.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6113-PA | 514..1305 | 17..808 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:45:04 Download gff for
BS11560.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6113-PA | 514..1305 | 17..808 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:45:15 Download gff for
BS11560.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lip4-RA | 636..1428 | 16..808 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:28:53 Download gff for
BS11560.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lip4-RA | 636..1428 | 16..808 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:28:53 Download gff for
BS11560.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10530436..10530675 | 569..808 | 100 | -> | Minus |
2L | 10530856..10531408 | 16..568 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:45:15 Download gff for
BS11560.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10530436..10530675 | 569..808 | 100 | -> | Minus |
arm_2L | 10530856..10531408 | 16..568 | 100 | | Minus |
BS11560.5prime Sequence
852 bp (761 high quality bases) assembled on 2006-05-08
> BS11560.5prime
GAAGTTATCAGTCGACATGTCGGTGAAATTGCTAATTGTAGCGCTTAGTT
TGTGCCTCCTGCAGTCGGGCATCGTCGAGGGTATATCATTATCACTCGGA
GATATAACCCTCTTTAATGTTAACTTCAAAACACCAACTTTTTTGGGAAG
ATCCGTGGCGGTGGATAGCAATGTGCGGTTGGAGAACGATGTGGATCCCA
ATATTCAGGAGGATTCACACTTGAATACCTACAGTCTGATAAAAAAGTAC
GGCTACCCGGCGGAGAATCACACCTTGGAGACGGATGATGGATACATCCT
CACCTTGCACAGGATCGCTAGACCGGGAGCAACGCCAGTGCTTCTGGTGC
ACGGACTACTGGATAGCTCAGCCACTTGGGTGATGATGGGACCGAACAAG
GGACTTGGTTACCTGCTCTACGATCAGGGGTACGATGTCTGGATGGCCAA
TGTTCGTGGCAATACGTACTCGAGAAAGCATGTTAAGTATAGCACCCACC
ATGCCAAGTTCTGGGACTTTACATTCCACGAGATGGGAAAGCATGATATA
CCCGCCACAATGGACTACATCCTCAATTCCACGGGCGTAAGCCAATTGCA
CTACATTGGTCACTCCCAGGGAACCGTTGTGTTCTGGATCATGGCCAGCG
AGAAGCCCGAGTATATGGACAAGATCATTCTGATGCAGGGATTGGCACCG
GTGGCATTCCTCAAGCACTGCCGCAGTCCGGTGGTCAACTTCCTGGCCGA
GTGGCATCTATCGGTGAGCTTGGTCCTCAAGCTGATTGGCGTTCACGAGT
TTTTGCCTAAGAATGAGTTCATCAGCATGTTCAACCGGATCATCTGCGAC
AA
BS11560.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:11:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6113-PA | 1305 | CG6113-RA | 1..834 | 17..850 | 4170 | 100 | Plus |
CG18301-PA | 1269 | CG18301-RA | 505..531 | 596..622 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:29:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lip4-RA | 1580 | CG6113-RA | 123..956 | 17..850 | 4170 | 100 | Plus |
Lip4-RB | 1861 | CG6113-RB | 410..1237 | 17..850 | 4070 | 99.3 | Plus |
Lip4-RC | 1936 | CG6113-RC | 285..1094 | 41..850 | 4050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:29:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10530313..10530675 | 407..769 | 1815 | 100 | Plus |
2L | 23513712 | 2L | 10529537..10529749 | 17..229 | 1065 | 100 | Plus |
2L | 23513712 | 2L | 10530078..10530257 | 230..409 | 900 | 100 | Plus |
2L | 23513712 | 2L | 10530856..10530936 | 770..850 | 405 | 100 | Plus |
2L | 23513712 | 2L | 10532757..10532872 | 596..711 | 280 | 82.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:29:41 has no hits.
BS11560.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:12:59 Download gff for
BS11560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6113-PA | 1..834 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:45:06 Download gff for
BS11560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6113-PA | 1..834 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:18:12 Download gff for
BS11560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lip4-RA | 123..956 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:37:26 Download gff for
BS11560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lip4-RA | 123..956 | 17..850 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:37:26 Download gff for
BS11560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10529537..10529749 | 17..229 | 100 | -> | Plus |
2L | 10530078..10530255 | 230..407 | 100 | -> | Plus |
2L | 10530314..10530675 | 408..769 | 100 | -> | Plus |
2L | 10530856..10530936 | 770..850 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:18:12 Download gff for
BS11560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10529537..10529749 | 17..229 | 100 | -> | Plus |
arm_2L | 10530078..10530255 | 230..407 | 100 | -> | Plus |
arm_2L | 10530856..10530936 | 770..850 | 100 | | Plus |
arm_2L | 10530314..10530675 | 408..769 | 100 | -> | Plus |
BS11560.complete Sequence
1337 bp assembled on 2006-11-01
GenBank Submission: FJ636904
> BS11560.complete
GAAGTTATCAGTCGACATGTCGGTGAAATTGCTAATTGTAGCGCTTAGTT
TGTGCCTCCTGCAGTCGGGCATCGTCGAGGGTATATCATTATCACTCGGA
GATATAACCCTCTTTAATGTTAACTTCAAAACACCAACTTTTTTGGGAAG
ATCCGTGGCGGTGGATAGCAATGTGCGGTTGGAGAACGATGTGGATCCCA
ATATTCAGGAGGATTCACACTTGAATACCTACAGTCTGATAAAAAAGTAC
GGCTACCCGGCGGAGAATCACACCTTGGAGACGGATGATGGATACATCCT
CACCTTGCACAGGATCGCTAGACCGGGAGCAACGCCAGTGCTTCTGGTGC
ACGGACTACTGGATAGCTCAGCCACTTGGGTGATGATGGGACCGAACAAG
GGACTTGGTTACCTGCTCTACGATCAGGGGTACGATGTCTGGATGGCCAA
TGTTCGTGGCAATACGTACTCGAGAAAGCATGTTAAGTATAGCACCCACC
ATGCCAAGTTCTGGGACTTTACATTCCACGAGATGGGAAAGCATGATATA
CCCGCCACAATGGACTACATCCTCAATTCCACGGGCGTAAGCCAATTGCA
CTACATTGGTCACTCCCAGGGAACCGTTGTGTTCTGGATCATGGCCAGCG
AGAAGCCCGAGTATATGGACAAGATCATTCTGATGCAGGGATTGGCACCG
GTGGCATTCCTCAAGCACTGCCGCAGTCCGGTGGTCAACTTCCTGGCCGA
GTGGCATCTATCGGTGAGCTTGGTCCTCAAGCTGATTGGCGTTCACGAGT
TTTTGCCTAAGAATGAGTTCATCAGCATGTTCAACCGGATCATCTGCGAC
GAGACCACTATTACGAAAGAGATTTGTTCAAACGTCATCTTCCTGACCAC
CGGATTCGACAAGCTCCAGCTGAACGAGACTATGCTGCCGGTAATCGTGG
GTCATTCTCCGGCCGGAGCCTCCACCAAGCAGATGCAGCATTTTGGACAG
CTCAACAGATCTGGCGGTTTCCGGCAGTATGATCACGGATGGCTCAGAAA
CCACTGGATCTACGGAACCATTGACCCGCCATCCTACCACCTGGAGAATG
TTCGGGCCAAGGTGGCACTATATTATGGCCAAAACGATTGGCTGGCTCCG
CCGGAGGATGTGGAAATGCTGAACCGCAAGCTGCCCAATGTCGTGGAGAA
ATATCTGGTGGACGACAAGGAGTTCAACCACTTGGATTTCATTTGGGGCA
TCGATGCCCGGGAACTTTTGTGGGATCGAATGCTGGAAATAATGCGAAAT
CATGAGAATTCAATTATCTAAAAGCTTTCTAGACCAT
BS11560.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:54:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lip4-RA | 1305 | CG6113-PA | 1..1305 | 17..1321 | 6525 | 100 | Plus |
Lip4-RC | 1347 | CG6113-PC | 67..1347 | 41..1321 | 6405 | 100 | Plus |
Lip4-RB | 1299 | CG6113-PB | 1..1299 | 17..1321 | 6400 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:54:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lip4-RA | 1580 | CG6113-RA | 123..1428 | 17..1322 | 6530 | 100 | Plus |
Lip4-RC | 1936 | CG6113-RC | 285..1566 | 41..1322 | 6410 | 100 | Plus |
Lip4-RB | 1861 | CG6113-RB | 410..1709 | 17..1322 | 6405 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:54:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10530856..10531408 | 770..1322 | 2765 | 100 | Plus |
2L | 23513712 | 2L | 10530313..10530675 | 407..769 | 1815 | 100 | Plus |
2L | 23513712 | 2L | 10529537..10529749 | 17..229 | 1065 | 100 | Plus |
2L | 23513712 | 2L | 10530078..10530257 | 230..409 | 900 | 100 | Plus |
2L | 23513712 | 2L | 10532757..10532872 | 596..711 | 280 | 82.8 | Plus |
2L | 23513712 | 2L | 10533301..10533416 | 1091..1206 | 250 | 81 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:54:52 has no hits.
BS11560.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:12 Download gff for
BS11560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6113-RA | 1..1305 | 17..1321 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:15 Download gff for
BS11560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lip4-RA | 121..1426 | 17..1322 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:33 Download gff for
BS11560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lip4-RA | 123..1425 | 17..1319 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:13 Download gff for
BS11560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6113-RA | 121..1426 | 17..1322 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:40 Download gff for
BS11560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lip4-RA | 123..1425 | 17..1319 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:40 Download gff for
BS11560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10529537..10529749 | 17..229 | 100 | -> | Plus |
2L | 10530078..10530255 | 230..407 | 100 | -> | Plus |
2L | 10530314..10530675 | 408..769 | 100 | -> | Plus |
2L | 10530856..10531405 | 770..1319 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:33 Download gff for
BS11560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10529537..10529749 | 17..229 | 100 | -> | Plus |
arm_2L | 10530078..10530255 | 230..407 | 100 | -> | Plus |
arm_2L | 10530314..10530675 | 408..769 | 100 | -> | Plus |
arm_2L | 10530856..10531405 | 770..1319 | 100 | | Plus |
BS11560.pep Sequence
Translation from 16 to 1320
> BS11560.pep
MSVKLLIVALSLCLLQSGIVEGISLSLGDITLFNVNFKTPTFLGRSVAVD
SNVRLENDVDPNIQEDSHLNTYSLIKKYGYPAENHTLETDDGYILTLHRI
ARPGATPVLLVHGLLDSSATWVMMGPNKGLGYLLYDQGYDVWMANVRGNT
YSRKHVKYSTHHAKFWDFTFHEMGKHDIPATMDYILNSTGVSQLHYIGHS
QGTVVFWIMASEKPEYMDKIILMQGLAPVAFLKHCRSPVVNFLAEWHLSV
SLVLKLIGVHEFLPKNEFISMFNRIICDETTITKEICSNVIFLTTGFDKL
QLNETMLPVIVGHSPAGASTKQMQHFGQLNRSGGFRQYDHGWLRNHWIYG
TIDPPSYHLENVRAKVALYYGQNDWLAPPEDVEMLNRKLPNVVEKYLVDD
KEFNHLDFIWGIDARELLWDRMLEIMRNHENSII*
BS11560.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lip4-PA | 434 | CG6113-PA | 1..434 | 1..434 | 2321 | 100 | Plus |
Lip4-PB | 432 | CG6113-PB | 1..432 | 1..434 | 2300 | 99.5 | Plus |
Lip4-PC | 448 | CG6113-PC | 17..448 | 3..434 | 2293 | 98.8 | Plus |
CG18301-PA | 422 | CG18301-PA | 34..401 | 59..428 | 1271 | 60 | Plus |
CG31871-PA | 531 | CG31871-PA | 10..439 | 4..431 | 1097 | 46.4 | Plus |