Clone Sequence Records
BS11562.3prime Sequence
871 bp (829 high quality bases) assembled on 2006-05-08
> BS11562.3prime
ATGGTCTAGAAAGCTTTTAGTGATTTTTAAACCAAACCCGTAGATTCTTT
AGAATCTTCTGGAGGTCATTGCTGTTTTGAGAGGAGAGGGATTTCAAGTC
CTCCTCAGGCGCCGCTTCCTTTTCACCACTACTTGTTGTGGATTCCGTGG
AAACAGATGAGGAATCAGTAGAGGATTCGGTAGAATCGGAGGGCGAATCA
GACGAGGATTCAGTAGAGGATTCGGTGGAAGCGGATGAGGAGTCTGTCGA
CGAATCAGTGGATGATTCGGTGGACACGGAGGACGAATCAGTTGAGGAAT
CCGTTGAGGATTCAGTGGAGACGGAGGACGAATCAGTAGACGATTCGGTG
GAAGCGGAGGAAGAATCAGTCGAGGAATCAGTAGAAGATTCGGTGGAAAC
GGAGGACGAATCAGTAGAAGATTCGGTGGAAACGGAGGACGAATCAGTAG
AGGATTCGGTGGAAGCGGACGTCGAATCAGTCGAAGAATCCGTGGAGGAG
GCCTGGGTGCTTGTGGATTCCGATGGAATTGGAGCGCCAGCAATGCAATC
ACCCAAATCCGCGTACAGCTGACCGTAGCTCTCTCCATAGGCCCTCTGGG
TCTTGTTGGTGCACACCTCTTCCTTCACCTTGATGAGACGCACTTCCTCC
TCCACAGCAGCCAGCAGCTCCGAAGCGTTAGCGGAGATGGTGAACATGGT
TTTGGTGTTGTTGGAGCCGGCTTCACTGTAGCACTGGAAGTAATCTATGG
CCGCTTCCTTTGTACTACATGCGGTGAGGGCATCGCAGGAGCTCTTGGCT
GAGGCATCGATGGCATCTCGTTCTTCCTTGGTATTGTCGGTGATCTGTGA
GACCTCCTGACTAGCTGTTTC
BS11562.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:11:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10911-PA | 1080 | CG10911-RA | 226..1080 | 871..17 | 4250 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10911-RA | 1221 | CG10911-RA | 286..1140 | 871..17 | 4260 | 99.9 | Minus |
| CG10911-RA | 1221 | CG10911-RA | 661..962 | 463..150 | 515 | 78 | Minus |
| CG10911-RA | 1221 | CG10911-RA | 694..1007 | 496..195 | 515 | 78 | Minus |
| CG10911-RA | 1221 | CG10911-RA | 692..905 | 387..162 | 455 | 81 | Minus |
| CG10911-RA | 1221 | CG10911-RA | 770..995 | 465..252 | 455 | 81 | Minus |
| CG10911-RA | 1221 | CG10911-RA | 667..824 | 379..210 | 400 | 83.5 | Minus |
| CG10911-RA | 1221 | CG10911-RA | 778..947 | 490..333 | 400 | 83.5 | Minus |
| CG10911-RA | 1221 | CG10911-RA | 859..1022 | 454..303 | 335 | 81.1 | Minus |
| CG10911-RA | 1221 | CG10911-RA | 703..854 | 298..135 | 335 | 81.1 | Minus |
| CG10911-RA | 1221 | CG10911-RA | 658..737 | 220..141 | 205 | 83.8 | Minus |
| CG10911-RA | 1221 | CG10911-RA | 700..770 | 211..141 | 205 | 85.9 | Minus |
| CG10911-RA | 1221 | CG10911-RA | 937..1016 | 499..420 | 205 | 83.8 | Minus |
| CG10911-RA | 1221 | CG10911-RA | 946..1016 | 457..387 | 205 | 85.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18052631..18053332 | 17..718 | 3510 | 100 | Plus |
| 2R | 25286936 | 2R | 18053628..18053781 | 718..871 | 755 | 99.4 | Plus |
| 2R | 25286936 | 2R | 18052764..18053077 | 195..496 | 485 | 77.7 | Plus |
| 2R | 25286936 | 2R | 18052809..18053110 | 150..463 | 485 | 77.7 | Plus |
| 2R | 25286936 | 2R | 18052863..18053001 | 327..465 | 425 | 87.1 | Plus |
| 2R | 25286936 | 2R | 18052941..18053079 | 249..387 | 425 | 87.1 | Plus |
| 2R | 25286936 | 2R | 18052824..18052993 | 333..490 | 365 | 82.4 | Plus |
| 2R | 25286936 | 2R | 18052947..18053104 | 210..379 | 365 | 82.4 | Plus |
| 2R | 25286936 | 2R | 18052749..18052912 | 303..454 | 305 | 80.5 | Plus |
| 2R | 25286936 | 2R | 18052917..18053068 | 135..298 | 305 | 80.5 | Plus |
| 2R | 25286936 | 2R | 18052755..18052834 | 420..499 | 205 | 83.8 | Plus |
| 2R | 25286936 | 2R | 18052755..18052825 | 387..457 | 205 | 85.9 | Plus |
| 2R | 25286936 | 2R | 18053001..18053071 | 141..211 | 205 | 85.9 | Plus |
| 2R | 25286936 | 2R | 18053034..18053113 | 141..220 | 205 | 83.8 | Plus |
Blast to na_te.dros performed 2015-02-10 18:45:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fw3 | 3132 | Fw3 FW3 3132bp | 168..217 | 89..41 | 112 | 72 | Minus |
BS11562.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:13:03 Download gff for
BS11562.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10911-PA | 226..1080 | 17..871 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:45:10 Download gff for
BS11562.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10911-PA | 226..1080 | 17..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 15:04:03 Download gff for
BS11562.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10911-RA | 286..1146 | 9..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:08:52 Download gff for
BS11562.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10911-RA | 286..1146 | 9..871 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:08:52 Download gff for
BS11562.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18052625..18053332 | 9..718 | 99 | <- | Plus |
| 2R | 18053629..18053781 | 719..871 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 15:04:03 Download gff for
BS11562.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13940130..13940837 | 9..718 | 99 | <- | Plus |
| arm_2R | 13941134..13941286 | 719..871 | 99 | | Plus |
BS11562.5prime Sequence
880 bp (807 high quality bases) assembled on 2006-05-08
> BS11562.5prime
GAAGTTATCAGTCGACATGCTCGTCAAGTTGTGCGCTATCCTTTTGGCCC
TTGGCCTTAGTCAGGCCATTGCGTATCCGCCCCTGCAACTTAGTAATCCG
CACCAGAACCTAGTGCAGTTCCTGATACAATCACGTGATCTCGGCAACGA
TGGTGGACATACCCTTGAATGCTTGGATTATTATCTTCCCCTGCTGAACG
ACGTTGTGGAGACCTACAAGGCTGATTTAAATGCGTGTTTGGAAACAGCT
AGTCAGGAGGTCTCACAGATCAACGACAATACCAAGGAAGAACGAGATGC
CATCGATGCCTCAGCCAAGAGCTCCTGCGATGCCCTCACCGCATGTAGTA
CAAAGGAAGCGGCCATAGATTACTTCCAGTGCTACAGTGAAGCCGGCTCC
AACAACACCAAAACCATGTTCACCATCTCCGCTAACGCTTCGGAGCTGCT
GGCTGCTGTGGAGGAGGAAGTGCGTCTCATCAAGGTGAAGGAAGAGGTGT
GCACCAACAAGACCCAGAGGGCCTATGGAGAGAGCTACGGTCAGCTGTAC
GCGGATTTGGGTGATTGCATTGCTGGCGCTCCAATTCCATCGGAATCCAC
AAGCACCCAGGCCTCCTCCACGGATTCTTCGACTGATTCGACGTCCGCTT
CCACCGAATCCTCTACTGATTCGTCCTCCGTTTCCACCGAATCTTCTACT
GATTCGTCCTCCGTTTCCACCGAATCTTCTACTGATTCCTCGACTGATTC
TTCCTCCGCTTCCACCGAATCGTCTACTGATTCGTCCTCCGTCTCCACTG
AATCCTCAACGGATTCCTCAACTGATTCGTCCTCCGTGTCCACGAATCAT
CCACTGATTCGTCGACAGACTCCTCATCCG
BS11562.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:11:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10911-PA | 1080 | CG10911-RA | 1..827 | 17..843 | 4135 | 100 | Plus |
| CG10911-PA | 1080 | CG10911-RA | 721..848 | 659..786 | 265 | 88.2 | Plus |
| CG10911-PA | 1080 | CG10911-RA | 828..865 | 843..880 | 190 | 100 | Plus |
| CG10911-PA | 1080 | CG10911-RA | 805..887 | 698..780 | 190 | 89.1 | Plus |
| CG10911-PA | 1080 | CG10911-RA | 867..935 | 715..783 | 145 | 88.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:26:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10911-RA | 1221 | CG10911-RA | 61..925 | 17..880 | 4300 | 99.9 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 770..995 | 648..860 | 430 | 80.5 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 778..947 | 623..780 | 400 | 83.5 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 692..830 | 726..863 | 400 | 86.3 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 694..954 | 617..864 | 390 | 77.4 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 661..827 | 650..816 | 370 | 81.4 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 859..1022 | 659..810 | 335 | 81.1 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 667..802 | 734..880 | 280 | 81.1 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 937..1016 | 614..693 | 205 | 83.8 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 946..1016 | 656..726 | 205 | 85.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:26:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18052846..18053332 | 880..395 | 2385 | 99.8 | Minus |
| 2R | 25286936 | 2R | 18053628..18054006 | 395..17 | 1895 | 100 | Minus |
| 2R | 25286936 | 2R | 18052863..18053001 | 786..648 | 425 | 87.1 | Minus |
| 2R | 25286936 | 2R | 18052941..18053079 | 863..726 | 375 | 86.3 | Minus |
| 2R | 25286936 | 2R | 18052911..18053077 | 783..617 | 370 | 81.4 | Minus |
| 2R | 25286936 | 2R | 18052944..18053110 | 816..650 | 370 | 81.4 | Minus |
| 2R | 25286936 | 2R | 18052824..18052993 | 780..623 | 365 | 82.4 | Minus |
| 2R | 25286936 | 2R | 18052749..18052912 | 810..659 | 305 | 80.5 | Minus |
| 2R | 25286936 | 2R | 18053022..18053104 | 816..734 | 265 | 88 | Minus |
| 2R | 25286936 | 2R | 18052755..18052834 | 693..614 | 205 | 83.8 | Minus |
| 2R | 25286936 | 2R | 18052755..18052825 | 726..656 | 205 | 85.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:26:30 has no hits.
BS11562.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:13:04 Download gff for
BS11562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10911-PA | 1..865 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:45:12 Download gff for
BS11562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10911-PA | 1..865 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:17:47 Download gff for
BS11562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10911-RA | 61..925 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:24:32 Download gff for
BS11562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10911-RA | 61..925 | 17..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:24:32 Download gff for
BS11562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18052846..18053332 | 395..880 | 99 | <- | Minus |
| 2R | 18053629..18054006 | 17..394 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:17:47 Download gff for
BS11562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13940351..13940837 | 395..880 | 99 | <- | Minus |
| arm_2R | 13941134..13941511 | 17..394 | 100 | | Minus |
BS11562.complete Sequence
1112 bp assembled on 2006-11-01
GenBank Submission: FJ636905
> BS11562.complete
GAAGTTATCAGTCGACATGCTCGTCAAGTTGTGCGCTATCCTTTTGGCCC
TTGGCCTTAGTCAGGCCATTGCGTATCCGCCCCTGCAACTTAGTAATCCG
CACCAGAACCTAGTGCAGTTCCTGATACAATCACGTGATCTCGGCAACGA
TGGTGGACATACCCTTGAATGCTTGGATTATTATCTTCCCCTGCTGAACG
ACGTTGTGGAGACCTACAAGGCTGATTTAAATGCGTGTTTGGAAACAGCT
AGTCAGGAGGTCTCACAGATCAACGACAATACCAAGGAAGAACGAGATGC
CATCGATGCCTCAGCCAAGAGCTCCTGCGATGCCCTCACCGCATGTAGTA
CAAAGGAAGCGGCCATAGATTACTTCCAGTGCTACAGTGAAGCCGGCTCC
AACAACACCAAAACCATGTTCACCATCTCCGCTAACGCTTCGGAGCTGCT
GGCTGCTGTGGAGGAGGAAGTGCGTCTCATCAAGGTGAAGGAAGAGGTGT
GCACCAACAAGACCCAGAGGGCCTATGGAGAGAGCTACGGTCAGCTGTAC
GCGGATTTGGGTGATTGCATTGCTGGCGCTCCAATTCCATCGGAATCCAC
AAGCACCCAGGCCTCCTCCACGGATTCTTCGACTGATTCGACGTCCGCTT
CCACCGAATCCTCTACTGATTCGTCCTCCGTTTCCACCGAATCTTCTACT
GATTCGTCCTCCGTTTCCACCGAATCTTCTACTGATTCCTCGACTGATTC
TTCCTCCGCTTCCACCGAATCGTCTACTGATTCGTCCTCCGTCTCCACTG
AATCCTCAACGGATTCCTCAACTGATTCGTCCTCCGTGTCCACCGAATCA
TCCACTGATTCGTCGACAGACTCCTCATCCGCTTCCACCGAATCCTCTAC
TGAATCCTCGTCTGATTCGCCCTCCGATTCTACCGAATCCTCTACTGATT
CCTCATCTGTTTCCACGGAATCCACAACAAGTAGTGGTGAAAAGGAAGCG
GCGCCTGAGGAGGACTTGAAATCCCTCTCCTCTCAAAACAGCAATGACCT
CCAGAAGATTCTAAAGAATCTACGGGTTTGGTTTAAAAATCACTAAAAGC
TTTCTAGACCAT
BS11562.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:50:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10911-RA | 1080 | CG10911-PA | 1..1080 | 17..1096 | 5400 | 100 | Plus |
| CG10911-RA | 1080 | CG10911-PA | 634..947 | 617..918 | 485 | 77.7 | Plus |
| CG10911-RA | 1080 | CG10911-PA | 601..902 | 650..963 | 485 | 77.7 | Plus |
| CG10911-RA | 1080 | CG10911-PA | 632..770 | 726..864 | 425 | 87.1 | Plus |
| CG10911-RA | 1080 | CG10911-PA | 710..848 | 648..786 | 425 | 87.1 | Plus |
| CG10911-RA | 1080 | CG10911-PA | 607..764 | 734..903 | 365 | 82.4 | Plus |
| CG10911-RA | 1080 | CG10911-PA | 718..887 | 623..780 | 365 | 82.4 | Plus |
| CG10911-RA | 1080 | CG10911-PA | 643..794 | 815..978 | 305 | 80.5 | Plus |
| CG10911-RA | 1080 | CG10911-PA | 799..962 | 659..810 | 305 | 80.5 | Plus |
| CG10911-RA | 1080 | CG10911-PA | 598..677 | 893..972 | 205 | 83.8 | Plus |
| CG10911-RA | 1080 | CG10911-PA | 640..710 | 902..972 | 205 | 85.9 | Plus |
| CG10911-RA | 1080 | CG10911-PA | 877..956 | 614..693 | 205 | 83.8 | Plus |
| CG10911-RA | 1080 | CG10911-PA | 886..956 | 656..726 | 205 | 85.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:50:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10911-RA | 1221 | CG10911-RA | 61..1140 | 17..1096 | 5400 | 100 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 661..962 | 650..963 | 485 | 77.7 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 694..1007 | 617..918 | 485 | 77.7 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 692..830 | 726..864 | 425 | 87.1 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 770..908 | 648..786 | 425 | 87.1 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 667..824 | 734..903 | 365 | 82.4 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 778..947 | 623..780 | 365 | 82.4 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 703..854 | 815..978 | 305 | 80.5 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 859..1022 | 659..810 | 305 | 80.5 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 700..770 | 902..972 | 205 | 85.9 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 937..1016 | 614..693 | 205 | 83.8 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 946..1016 | 656..726 | 205 | 85.9 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 658..737 | 893..972 | 205 | 83.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:50:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18052631..18053332 | 1096..395 | 3510 | 100 | Minus |
| 2R | 25286936 | 2R | 18053628..18054006 | 395..17 | 1895 | 100 | Minus |
| 2R | 25286936 | 2R | 18052764..18053077 | 918..617 | 485 | 77.7 | Minus |
| 2R | 25286936 | 2R | 18052809..18053110 | 963..650 | 485 | 77.7 | Minus |
| 2R | 25286936 | 2R | 18052863..18053001 | 786..648 | 425 | 87.1 | Minus |
| 2R | 25286936 | 2R | 18052941..18053079 | 864..726 | 425 | 87.1 | Minus |
| 2R | 25286936 | 2R | 18052824..18052993 | 780..623 | 365 | 82.4 | Minus |
| 2R | 25286936 | 2R | 18052947..18053104 | 903..734 | 365 | 82.4 | Minus |
| 2R | 25286936 | 2R | 18052749..18052912 | 810..659 | 305 | 80.5 | Minus |
| 2R | 25286936 | 2R | 18052917..18053068 | 978..815 | 305 | 80.5 | Minus |
| 2R | 25286936 | 2R | 18052755..18052834 | 693..614 | 205 | 83.8 | Minus |
| 2R | 25286936 | 2R | 18052755..18052825 | 726..656 | 205 | 85.9 | Minus |
| 2R | 25286936 | 2R | 18053001..18053071 | 972..902 | 205 | 85.9 | Minus |
| 2R | 25286936 | 2R | 18053034..18053113 | 972..893 | 205 | 83.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:50:35 has no hits.
BS11562.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:55 Download gff for
BS11562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10911-RA | 1..1080 | 17..1096 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:24:55 Download gff for
BS11562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10911-RA | 59..1144 | 17..1104 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:53:06 Download gff for
BS11562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10911-RA | 61..1138 | 17..1094 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:55 Download gff for
BS11562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10911-RA | 59..1144 | 17..1104 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:49 Download gff for
BS11562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10911-RA | 61..1138 | 17..1094 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:49 Download gff for
BS11562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18052633..18053332 | 395..1094 | 100 | <- | Minus |
| 2R | 18053629..18054006 | 17..394 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:53:06 Download gff for
BS11562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13940138..13940837 | 395..1094 | 100 | <- | Minus |
| arm_2R | 13941134..13941511 | 17..394 | 100 | | Minus |
BS11562.pep Sequence
Translation from 16 to 1095
> BS11562.pep
MLVKLCAILLALGLSQAIAYPPLQLSNPHQNLVQFLIQSRDLGNDGGHTL
ECLDYYLPLLNDVVETYKADLNACLETASQEVSQINDNTKEERDAIDASA
KSSCDALTACSTKEAAIDYFQCYSEAGSNNTKTMFTISANASELLAAVEE
EVRLIKVKEEVCTNKTQRAYGESYGQLYADLGDCIAGAPIPSESTSTQAS
STDSSTDSTSASTESSTDSSSVSTESSTDSSSVSTESSTDSSTDSSSAST
ESSTDSSSVSTESSTDSSTDSSSVSTESSTDSSTDSSSASTESSTESSSD
SPSDSTESSTDSSSVSTESTTSSGEKEAAPEEDLKSLSSQNSNDLQKILK
NLRVWFKNH*
BS11562.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10911-PA | 359 | CG10911-PA | 1..359 | 1..359 | 1762 | 100 | Plus |
| CG42525-PA | 419 | CG42525-PA | 76..320 | 98..344 | 330 | 41.2 | Plus |
| CG42525-PB | 377 | CG42525-PB | 87..252 | 194..344 | 321 | 57.6 | Plus |
| CG42525-PB | 377 | CG42525-PB | 111..278 | 192..344 | 320 | 56.4 | Plus |
| CG42525-PB | 377 | CG42525-PB | 98..261 | 192..340 | 316 | 57.1 | Plus |
| CG42525-PA | 419 | CG42525-PA | 60..354 | 52..332 | 314 | 35.8 | Plus |
| CG42525-PB | 377 | CG42525-PB | 76..312 | 98..332 | 312 | 40.2 | Plus |
| CG42525-PB | 377 | CG42525-PB | 66..230 | 184..344 | 291 | 50.3 | Plus |
| CG5767-PA | 253 | CG5767-PA | 4..253 | 5..256 | 287 | 26.7 | Plus |
| CG42525-PB | 377 | CG42525-PB | 60..311 | 52..312 | 280 | 32.8 | Plus |
| CG10912-PA | 271 | CG10912-PA | 5..255 | 5..257 | 273 | 30.2 | Plus |
| CG42525-PA | 419 | CG42525-PA | 146..377 | 83..306 | 210 | 29.5 | Plus |
