Clone BS11568 Report

Search the DGRC for BS11568

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:115
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCG18417-RA
Protein status:BS11568.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11568.3prime Sequence

908 bp (790 high quality bases) assembled on 2006-05-08

> BS11568.3prime
ATGGTCTAGAAAGCTTTTATGCAAGCGGATACTTTTGTATTACTTTCCGG
GCCATGGCCGCAATGCCCACCCAGGTCTCCTTGACTATGCTATCTATATC
CGATGCCGGAGGATCGAATCCTGTACCACCGAAGGGCAGTTCCATGGTGA
ATGATATGGGGAAGCCAGCATTGAAGGCATAATCATCGCTAGCTCCGGAT
GCCGCATAATTAATGGTTGTGGCAGAGGGTCCAATCTTATAGATAGTGCC
AGTGGCCTCCTGAATGGCACTTTGACCTGCTGCAGCAACCTCATGCAGAT
CCTCTTCTGTGTCGGGAACAGCTGCCGTCCAACCCCAAGGATACAGAATA
AGTGATCCATACGAATGCAAAGTCAAATACATCTGTCCGCGGTCCACATA
GCTATGGATGAGATCCCCAACGACCAGAGCCTCTGGTTCTGAAAAAGGCT
TTGCACCAGCATATATGTTATCACAGGGATCATCCGAGGCACCCTCCTCG
TTCCAGTGGAAGTCAAAGTTACGGTTGGGATCGGTGCCAATGCAATCCGA
ACTGCTGGGTTTCCTGGTTTTGCGCCACATGCGAGTATCCTCCGATAACT
GGGTGTACTCATAGCCATCGGGATTGACCACAGGGAGGATCACCCAATCG
AAGTCCAGCAGAAGATCCGCATTATCTTCGAGATTATACACCAGCTGGTT
AATCAGATAAGTAGCAGCTGCCGGTGAGATCCATTCTCGTGCATGGAAGC
CACCATCTACGAGGATCACATTCTTATTGCGCCTGGCATCGCCATTGGTG
ATTGTGATGGTTTTCAGCCAGCGACCTTCGTTACTTCTGCCCTACGGTTT
TTAGGAAAACCCTACGCGGATGTTCCCCAGCCAAATCCTCAATGAACTGG
TTGATCTC

BS11568.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:11:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG18417-PA 1284 CG18417-RA 460..1284 841..17 4100 99.8 Minus
CG18417-PA 1284 CG18417-RA 394..461 908..841 340 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG18417-RA 1480 CG18417-RA 419..1309 908..17 4420 99.8 Minus
CG8562-RA 1483 CG8562-RA 495..746 817..566 335 77 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7400543..7401126 908..324 2860 99.7 Minus
3L 28110227 3L 7401194..7401500 323..17 1535 100 Minus
3L 28110227 3L 7398864..7399082 817..599 300 75.8 Minus
Blast to na_te.dros performed on 2015-02-10 18:45:48 has no hits.

BS11568.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:13:14 Download gff for BS11568.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18417-PA 394..1284 17..908 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:45:27 Download gff for BS11568.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18417-PA 394..1284 17..908 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 15:04:00 Download gff for BS11568.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18417-RA 419..1309 17..908 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:08:39 Download gff for BS11568.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18417-RA 419..1309 17..908 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:08:39 Download gff for BS11568.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 7401194..7401500 17..323 100   Minus
3L 7400543..7401126 324..908 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 15:04:00 Download gff for BS11568.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7393643..7394226 324..908 99 -> Minus
arm_3L 7394294..7394600 17..323 100   Minus

BS11568.5prime Sequence

818 bp (758 high quality bases) assembled on 2006-05-08

> BS11568.5prime
GAAGTTATCAGTCGACATGACAGTTGTTTGGGTCATTCTGGCACTAAGCT
GCCTGAGCTTGTCAGCTGGACTGCAGAGAACCAATAAATACGAAGGTTAT
AAAATCTATGAGGTCTCTAGTGAAGCGCGTTCTGTAGCCTTTTCAGAAGC
TCTGTCCGAACTGGTCAAGAATGCGTCATATTATGAGGTGTTCTCGGAAT
TGAATGCTGGTAATCCAGGCAAGATTATGGTGCATCCTCACGAACAGGTG
AACTTTGTGCAGCTGATGGAGGAGAATAATGTGAAGTATGATATTATCAA
CCGAAATGTGGGTCTTACTCTGAGCCGTCAATTCGAAACGAACCGGATGT
TACGACATTGGTTTCCCTACAATGGAAGATTGGGCACTGAGAGATACTAC
AACCATGAGGAGATCAACCAGTTCATTGAGGATTTGGCTGGGGAACATCC
GCGTAGGGTTTTCCTAAAAACCGTAGGCAGAAGTTACGAAGGTCGCTGGC
TGAAAACCATCACAATCACCAATGGCGATGCCAGGCGCAATAAGAATGTG
ATCCTCGTAGATGGTGGCTTCCATGCACGAGAATGGATCTCACCGGCAGC
TGCTACTTATCTGATTAACCAGCTGGTGTATAATCTCGAAGATAATGCGG
ATCTTCTGCTGGACTTCGATTGGGTGATCCTCCCTGTGGTCAATCCCGAT
GGCTATGAGTACACCCAGTTATCGGAGGATACTCGCATGTGGCGCAAAAC
CAGGAAACCCAACAGTTCGGATTGCATTGGCACCGATCCCAACCGTAACT
TTGACTTCCACTGGAACG

BS11568.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:11:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG18417-PA 1284 CG18417-RA 1..802 17..818 3985 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG18417-RA 1480 CG18417-RA 26..827 17..818 3995 99.9 Plus
CG8562-RA 1483 CG8562-RA 495..746 500..751 335 77 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:07:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7400229..7400951 96..818 3600 99.9 Plus
3L 28110227 3L 7400095..7400182 17..104 425 98.9 Plus
3L 28110227 3L 7398864..7399082 500..718 300 75.8 Plus
Blast to na_te.dros performed on 2015-02-10 00:07:06 has no hits.

BS11568.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:13:15 Download gff for BS11568.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18417-PA 1..802 17..818 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:45:28 Download gff for BS11568.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18417-PA 1..802 17..818 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:31:59 Download gff for BS11568.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18417-RA 26..827 17..818 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:01:31 Download gff for BS11568.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18417-RA 26..827 17..818 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:01:31 Download gff for BS11568.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7400095..7400174 17..96 100 -> Plus
3L 7400230..7400951 97..818 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:31:59 Download gff for BS11568.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7393195..7393274 17..96 100 -> Plus
arm_3L 7393330..7394051 97..818 99   Plus

BS11568.complete Sequence

1316 bp assembled on 2006-11-01

GenBank Submission: FJ636906

> BS11568.complete
GAAGTTATCAGTCGACATGACAGTTGTTTGGGTCATTCTGGCACTAAGCT
GCCTGAGCTTGTCAGCTGGACTGCAGAGAACCAATAAATACGAAGGTTAT
AAAATCTATGAGGTCTCTAGTGAAGCGCGTTCTGTAGCCTTTTCAGAAGC
TCTGTCCGAACTGGTCAAGAATGCGTCATATTATGAGGTGTTCTCGGAAT
TGAATGCTGGTAATCCAGGCAAGATTATGGTGCATCCTCACGAACAGGTG
AACTTTGTGCAGCTGATGGAGGAGAATAATGTGAAGTATGATATTATCAA
CCGAAATGTGGGTCTTACTCTGAGCCGTCAATTCGAAACGAACCGGATGT
TACGACATTGGTTTCCCTACAATGGAAGATTGGGCACTGAGAGATACTAC
AACCATGAGGAGATCAACCAGTTCATTGAGGATTTGGCTGGGGAACATCC
GCGTAGGGTTTTCCTAAAAACCGTAGGCAGAAGTTACGAAGGTCGCTGGC
TGAAAACCATCACAATCACCAATGGCGATGCCAGGCGCAATAAGAATGTG
ATCCTCGTAGATGGTGGCTTCCATGCACGAGAATGGATCTCACCGGCAGC
TGCTACTTATCTGATTAACCAGCTGGTGTATAATCTCGAAGATAATGCGG
ATCTTCTGCTGGACTTCGATTGGGTGATCCTCCCTGTGGTCAATCCCGAT
GGCTATGAGTACACCCAGTTATCGGAGGATACTCGCATGTGGCGCAAAAC
CAGGAAACCCAGCAGTTCGGATTGCATTGGCACCGATCCCAACCGTAACT
TTGACTTCCACTGGAACGAGGAGGGTGCCTCGGATGATCCCTGTGATAAC
ATATATGCTGGTGCAAAGCCTTTTTCAGAACCAGAGGCTCTGGTCGTTGG
GGATCTCATCCATAGCTATGTGGACCGCGGACAGATGTATTTGACTTTGC
ATTCGTATGGATCACTTATTCTGTATCCTTGGGGTTGGACGGCAGCTGTT
CCCGACACAGAAGAGGATCTGCATGAGGTTGCTGCAGCAGGTCAAAGTGC
CATTCAGGAGGCCACTGGCACTATCTATAAGATTGGACCCTCTGCCACAA
CCATTAATTATGCGGCATCCGGAGCTAGCGATGATTATGCCTTCAATGCT
GGCTTCCCCATATCATTCACCATGGAACTGCCCTTCGGTGGTACAGGATT
CGATCCTCCGGCATCGGATATAGATAGCATAGTCAAGGAGACCTGGGTGG
GCATTGCGGCCATGGCCCGGAAAGTAATACAAAAGTATCCGCTTGCATAA
AAGCTTTCTAGACCAT

BS11568.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:38:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG18417-RA 1284 CG18417-PA 1..1284 17..1300 6420 100 Plus
CG8562-RA 1275 CG8562-PA 475..693 500..718 300 75.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:38:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG18417-RA 1480 CG18417-RA 26..1309 17..1300 6420 100 Plus
CG8562-RA 1483 CG8562-RA 495..713 500..718 300 75.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:38:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7400229..7401126 96..993 4490 100 Plus
3L 28110227 3L 7401194..7401500 994..1300 1535 100 Plus
3L 28110227 3L 7400095..7400182 17..104 425 98.9 Plus
3L 28110227 3L 7398864..7399082 500..718 300 75.8 Plus
Blast to na_te.dros performed on 2014-11-28 00:38:15 has no hits.

BS11568.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:48 Download gff for BS11568.complete
Subject Subject Range Query Range Percent Splice Strand
CG18417-RA 1..1284 17..1300 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:24:47 Download gff for BS11568.complete
Subject Subject Range Query Range Percent Splice Strand
CG18417-RA 19..1302 17..1300 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:23 Download gff for BS11568.complete
Subject Subject Range Query Range Percent Splice Strand
CG18417-RA 26..1307 17..1298 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:48 Download gff for BS11568.complete
Subject Subject Range Query Range Percent Splice Strand
CG18417-RA 19..1302 17..1300 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:56 Download gff for BS11568.complete
Subject Subject Range Query Range Percent Splice Strand
CG18417-RA 26..1307 17..1298 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:56 Download gff for BS11568.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7400230..7401126 97..993 100 -> Plus
3L 7401194..7401498 994..1298 100   Plus
3L 7400095..7400174 17..96 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:23 Download gff for BS11568.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7393195..7393274 17..96 100 -> Plus
arm_3L 7393330..7394226 97..993 100 -> Plus
arm_3L 7394294..7394598 994..1298 100   Plus

BS11568.pep Sequence

Translation from 16 to 1299

> BS11568.pep
MTVVWVILALSCLSLSAGLQRTNKYEGYKIYEVSSEARSVAFSEALSELV
KNASYYEVFSELNAGNPGKIMVHPHEQVNFVQLMEENNVKYDIINRNVGL
TLSRQFETNRMLRHWFPYNGRLGTERYYNHEEINQFIEDLAGEHPRRVFL
KTVGRSYEGRWLKTITITNGDARRNKNVILVDGGFHAREWISPAAATYLI
NQLVYNLEDNADLLLDFDWVILPVVNPDGYEYTQLSEDTRMWRKTRKPSS
SDCIGTDPNRNFDFHWNEEGASDDPCDNIYAGAKPFSEPEALVVGDLIHS
YVDRGQMYLTLHSYGSLILYPWGWTAAVPDTEEDLHEVAAAGQSAIQEAT
GTIYKIGPSATTINYAASGASDDYAFNAGFPISFTMELPFGGTGFDPPAS
DIDSIVKETWVGIAAMARKVIQKYPLA*

BS11568.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG18417-PA 427 CG18417-PA 1..427 1..427 2268 100 Plus
CG8562-PA 424 CG8562-PA 5..424 8..424 1129 54.1 Plus
CG8560-PB 418 CG8560-PB 7..418 6..424 1032 49.3 Plus
CG8560-PA 418 CG8560-PA 7..418 6..424 1032 49.3 Plus
CG32379-PB 344 CG32379-PB 44..343 127..425 787 51.8 Plus