Clone Sequence Records
BS11568.3prime Sequence
908 bp (790 high quality bases) assembled on 2006-05-08
> BS11568.3prime
ATGGTCTAGAAAGCTTTTATGCAAGCGGATACTTTTGTATTACTTTCCGG
GCCATGGCCGCAATGCCCACCCAGGTCTCCTTGACTATGCTATCTATATC
CGATGCCGGAGGATCGAATCCTGTACCACCGAAGGGCAGTTCCATGGTGA
ATGATATGGGGAAGCCAGCATTGAAGGCATAATCATCGCTAGCTCCGGAT
GCCGCATAATTAATGGTTGTGGCAGAGGGTCCAATCTTATAGATAGTGCC
AGTGGCCTCCTGAATGGCACTTTGACCTGCTGCAGCAACCTCATGCAGAT
CCTCTTCTGTGTCGGGAACAGCTGCCGTCCAACCCCAAGGATACAGAATA
AGTGATCCATACGAATGCAAAGTCAAATACATCTGTCCGCGGTCCACATA
GCTATGGATGAGATCCCCAACGACCAGAGCCTCTGGTTCTGAAAAAGGCT
TTGCACCAGCATATATGTTATCACAGGGATCATCCGAGGCACCCTCCTCG
TTCCAGTGGAAGTCAAAGTTACGGTTGGGATCGGTGCCAATGCAATCCGA
ACTGCTGGGTTTCCTGGTTTTGCGCCACATGCGAGTATCCTCCGATAACT
GGGTGTACTCATAGCCATCGGGATTGACCACAGGGAGGATCACCCAATCG
AAGTCCAGCAGAAGATCCGCATTATCTTCGAGATTATACACCAGCTGGTT
AATCAGATAAGTAGCAGCTGCCGGTGAGATCCATTCTCGTGCATGGAAGC
CACCATCTACGAGGATCACATTCTTATTGCGCCTGGCATCGCCATTGGTG
ATTGTGATGGTTTTCAGCCAGCGACCTTCGTTACTTCTGCCCTACGGTTT
TTAGGAAAACCCTACGCGGATGTTCCCCAGCCAAATCCTCAATGAACTGG
TTGATCTC
BS11568.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:11:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18417-PA | 1284 | CG18417-RA | 460..1284 | 841..17 | 4100 | 99.8 | Minus |
CG18417-PA | 1284 | CG18417-RA | 394..461 | 908..841 | 340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18417-RA | 1480 | CG18417-RA | 419..1309 | 908..17 | 4420 | 99.8 | Minus |
CG8562-RA | 1483 | CG8562-RA | 495..746 | 817..566 | 335 | 77 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7400543..7401126 | 908..324 | 2860 | 99.7 | Minus |
3L | 28110227 | 3L | 7401194..7401500 | 323..17 | 1535 | 100 | Minus |
3L | 28110227 | 3L | 7398864..7399082 | 817..599 | 300 | 75.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:45:48 has no hits.
BS11568.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:13:14 Download gff for
BS11568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18417-PA | 394..1284 | 17..908 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:45:27 Download gff for
BS11568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18417-PA | 394..1284 | 17..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 15:04:00 Download gff for
BS11568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18417-RA | 419..1309 | 17..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:08:39 Download gff for
BS11568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18417-RA | 419..1309 | 17..908 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:08:39 Download gff for
BS11568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7401194..7401500 | 17..323 | 100 | | Minus |
3L | 7400543..7401126 | 324..908 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 15:04:00 Download gff for
BS11568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7393643..7394226 | 324..908 | 99 | -> | Minus |
arm_3L | 7394294..7394600 | 17..323 | 100 | | Minus |
BS11568.5prime Sequence
818 bp (758 high quality bases) assembled on 2006-05-08
> BS11568.5prime
GAAGTTATCAGTCGACATGACAGTTGTTTGGGTCATTCTGGCACTAAGCT
GCCTGAGCTTGTCAGCTGGACTGCAGAGAACCAATAAATACGAAGGTTAT
AAAATCTATGAGGTCTCTAGTGAAGCGCGTTCTGTAGCCTTTTCAGAAGC
TCTGTCCGAACTGGTCAAGAATGCGTCATATTATGAGGTGTTCTCGGAAT
TGAATGCTGGTAATCCAGGCAAGATTATGGTGCATCCTCACGAACAGGTG
AACTTTGTGCAGCTGATGGAGGAGAATAATGTGAAGTATGATATTATCAA
CCGAAATGTGGGTCTTACTCTGAGCCGTCAATTCGAAACGAACCGGATGT
TACGACATTGGTTTCCCTACAATGGAAGATTGGGCACTGAGAGATACTAC
AACCATGAGGAGATCAACCAGTTCATTGAGGATTTGGCTGGGGAACATCC
GCGTAGGGTTTTCCTAAAAACCGTAGGCAGAAGTTACGAAGGTCGCTGGC
TGAAAACCATCACAATCACCAATGGCGATGCCAGGCGCAATAAGAATGTG
ATCCTCGTAGATGGTGGCTTCCATGCACGAGAATGGATCTCACCGGCAGC
TGCTACTTATCTGATTAACCAGCTGGTGTATAATCTCGAAGATAATGCGG
ATCTTCTGCTGGACTTCGATTGGGTGATCCTCCCTGTGGTCAATCCCGAT
GGCTATGAGTACACCCAGTTATCGGAGGATACTCGCATGTGGCGCAAAAC
CAGGAAACCCAACAGTTCGGATTGCATTGGCACCGATCCCAACCGTAACT
TTGACTTCCACTGGAACG
BS11568.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:11:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18417-PA | 1284 | CG18417-RA | 1..802 | 17..818 | 3985 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:07:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18417-RA | 1480 | CG18417-RA | 26..827 | 17..818 | 3995 | 99.9 | Plus |
CG8562-RA | 1483 | CG8562-RA | 495..746 | 500..751 | 335 | 77 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:07:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7400229..7400951 | 96..818 | 3600 | 99.9 | Plus |
3L | 28110227 | 3L | 7400095..7400182 | 17..104 | 425 | 98.9 | Plus |
3L | 28110227 | 3L | 7398864..7399082 | 500..718 | 300 | 75.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 00:07:06 has no hits.
BS11568.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:13:15 Download gff for
BS11568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18417-PA | 1..802 | 17..818 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:45:28 Download gff for
BS11568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18417-PA | 1..802 | 17..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:31:59 Download gff for
BS11568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18417-RA | 26..827 | 17..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:01:31 Download gff for
BS11568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18417-RA | 26..827 | 17..818 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:01:31 Download gff for
BS11568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7400095..7400174 | 17..96 | 100 | -> | Plus |
3L | 7400230..7400951 | 97..818 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:31:59 Download gff for
BS11568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7393195..7393274 | 17..96 | 100 | -> | Plus |
arm_3L | 7393330..7394051 | 97..818 | 99 | | Plus |
BS11568.complete Sequence
1316 bp assembled on 2006-11-01
GenBank Submission: FJ636906
> BS11568.complete
GAAGTTATCAGTCGACATGACAGTTGTTTGGGTCATTCTGGCACTAAGCT
GCCTGAGCTTGTCAGCTGGACTGCAGAGAACCAATAAATACGAAGGTTAT
AAAATCTATGAGGTCTCTAGTGAAGCGCGTTCTGTAGCCTTTTCAGAAGC
TCTGTCCGAACTGGTCAAGAATGCGTCATATTATGAGGTGTTCTCGGAAT
TGAATGCTGGTAATCCAGGCAAGATTATGGTGCATCCTCACGAACAGGTG
AACTTTGTGCAGCTGATGGAGGAGAATAATGTGAAGTATGATATTATCAA
CCGAAATGTGGGTCTTACTCTGAGCCGTCAATTCGAAACGAACCGGATGT
TACGACATTGGTTTCCCTACAATGGAAGATTGGGCACTGAGAGATACTAC
AACCATGAGGAGATCAACCAGTTCATTGAGGATTTGGCTGGGGAACATCC
GCGTAGGGTTTTCCTAAAAACCGTAGGCAGAAGTTACGAAGGTCGCTGGC
TGAAAACCATCACAATCACCAATGGCGATGCCAGGCGCAATAAGAATGTG
ATCCTCGTAGATGGTGGCTTCCATGCACGAGAATGGATCTCACCGGCAGC
TGCTACTTATCTGATTAACCAGCTGGTGTATAATCTCGAAGATAATGCGG
ATCTTCTGCTGGACTTCGATTGGGTGATCCTCCCTGTGGTCAATCCCGAT
GGCTATGAGTACACCCAGTTATCGGAGGATACTCGCATGTGGCGCAAAAC
CAGGAAACCCAGCAGTTCGGATTGCATTGGCACCGATCCCAACCGTAACT
TTGACTTCCACTGGAACGAGGAGGGTGCCTCGGATGATCCCTGTGATAAC
ATATATGCTGGTGCAAAGCCTTTTTCAGAACCAGAGGCTCTGGTCGTTGG
GGATCTCATCCATAGCTATGTGGACCGCGGACAGATGTATTTGACTTTGC
ATTCGTATGGATCACTTATTCTGTATCCTTGGGGTTGGACGGCAGCTGTT
CCCGACACAGAAGAGGATCTGCATGAGGTTGCTGCAGCAGGTCAAAGTGC
CATTCAGGAGGCCACTGGCACTATCTATAAGATTGGACCCTCTGCCACAA
CCATTAATTATGCGGCATCCGGAGCTAGCGATGATTATGCCTTCAATGCT
GGCTTCCCCATATCATTCACCATGGAACTGCCCTTCGGTGGTACAGGATT
CGATCCTCCGGCATCGGATATAGATAGCATAGTCAAGGAGACCTGGGTGG
GCATTGCGGCCATGGCCCGGAAAGTAATACAAAAGTATCCGCTTGCATAA
AAGCTTTCTAGACCAT
BS11568.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:38:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18417-RA | 1284 | CG18417-PA | 1..1284 | 17..1300 | 6420 | 100 | Plus |
CG8562-RA | 1275 | CG8562-PA | 475..693 | 500..718 | 300 | 75.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:38:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18417-RA | 1480 | CG18417-RA | 26..1309 | 17..1300 | 6420 | 100 | Plus |
CG8562-RA | 1483 | CG8562-RA | 495..713 | 500..718 | 300 | 75.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:38:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7400229..7401126 | 96..993 | 4490 | 100 | Plus |
3L | 28110227 | 3L | 7401194..7401500 | 994..1300 | 1535 | 100 | Plus |
3L | 28110227 | 3L | 7400095..7400182 | 17..104 | 425 | 98.9 | Plus |
3L | 28110227 | 3L | 7398864..7399082 | 500..718 | 300 | 75.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:38:15 has no hits.
BS11568.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:48 Download gff for
BS11568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18417-RA | 1..1284 | 17..1300 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:24:47 Download gff for
BS11568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18417-RA | 19..1302 | 17..1300 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:23 Download gff for
BS11568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18417-RA | 26..1307 | 17..1298 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:48 Download gff for
BS11568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18417-RA | 19..1302 | 17..1300 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:56 Download gff for
BS11568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18417-RA | 26..1307 | 17..1298 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:56 Download gff for
BS11568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7400230..7401126 | 97..993 | 100 | -> | Plus |
3L | 7401194..7401498 | 994..1298 | 100 | | Plus |
3L | 7400095..7400174 | 17..96 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:23 Download gff for
BS11568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7393195..7393274 | 17..96 | 100 | -> | Plus |
arm_3L | 7393330..7394226 | 97..993 | 100 | -> | Plus |
arm_3L | 7394294..7394598 | 994..1298 | 100 | | Plus |
BS11568.pep Sequence
Translation from 16 to 1299
> BS11568.pep
MTVVWVILALSCLSLSAGLQRTNKYEGYKIYEVSSEARSVAFSEALSELV
KNASYYEVFSELNAGNPGKIMVHPHEQVNFVQLMEENNVKYDIINRNVGL
TLSRQFETNRMLRHWFPYNGRLGTERYYNHEEINQFIEDLAGEHPRRVFL
KTVGRSYEGRWLKTITITNGDARRNKNVILVDGGFHAREWISPAAATYLI
NQLVYNLEDNADLLLDFDWVILPVVNPDGYEYTQLSEDTRMWRKTRKPSS
SDCIGTDPNRNFDFHWNEEGASDDPCDNIYAGAKPFSEPEALVVGDLIHS
YVDRGQMYLTLHSYGSLILYPWGWTAAVPDTEEDLHEVAAAGQSAIQEAT
GTIYKIGPSATTINYAASGASDDYAFNAGFPISFTMELPFGGTGFDPPAS
DIDSIVKETWVGIAAMARKVIQKYPLA*
BS11568.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18417-PA | 427 | CG18417-PA | 1..427 | 1..427 | 2268 | 100 | Plus |
CG8562-PA | 424 | CG8562-PA | 5..424 | 8..424 | 1129 | 54.1 | Plus |
CG8560-PB | 418 | CG8560-PB | 7..418 | 6..424 | 1032 | 49.3 | Plus |
CG8560-PA | 418 | CG8560-PA | 7..418 | 6..424 | 1032 | 49.3 | Plus |
CG32379-PB | 344 | CG32379-PB | 44..343 | 127..425 | 787 | 51.8 | Plus |