Clone Sequence Records
BS11577.3prime Sequence
621 bp (620 high quality bases) assembled on 2006-05-08
> BS11577.3prime
ATGGTCTAGAAAGCTTTCACCAGCCCAGCCACGGCGGATGATTAATCTTA
GATGGCGGGGTAAAGGTGAGGTTGACCGGTATGTTGATCAGGGCGTGCAC
CCTCTTCAGCCGCTGCAGCGTCGACCGGATGATGACGCCATTCTTCCCGA
GAAGAAAGCCGGCCGGTATGTTGGCGTCCTGTTGGGAGTTGTCATGTATC
ATCTCGATGTAGTGCTCAAACTCTGGAGAGCTGGGATTGTACTCAGTGAT
GATTGCAGCCAATGCGCCAGCTGCCTCCGCTCGAAGTGTCTTCGTGAGGA
AGGAACACTCCCCTCGATCAATGAGTGCGACGCCCCCATTCAGATCTCTG
GCGTTCCGGATCTCCTGGCAGGCGCCGGGGGGATCTGTAATCACTAGCGG
CACACCCTCCAGTCGCTCCGAGAAGGCGGATCCAAAGTCCTTGGCCGGGC
GCAGCCGGTACGTGTATTCCAGTTCCGAGGGGGACAGGATTTCAAAAAAC
ACGTCACCCGCTATTATGTCCTGCGTTGTGATCGGTATCGATATCGTGGT
GCTGGCTCTGATGGATCGGCTCAAAGTGGCGGCAAGCACTAACCAGGCGA
TTAGCATGTCGACTGATAACT
BS11577.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:11:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9849-PA | 591 | CG9849-RA | 1..591 | 607..17 | 2955 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:39:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9849-RB | 920 | CG9849-RB | 89..679 | 607..17 | 2955 | 100 | Minus |
CG9849-RA | 986 | CG9849-RA | 155..745 | 607..17 | 2955 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:39:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22937864..22938160 | 607..311 | 1485 | 100 | Minus |
2R | 25286936 | 2R | 22938489..22938784 | 312..17 | 1480 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:39:19 has no hits.
BS11577.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:13:30 Download gff for
BS11577.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9849-PA | 1..591 | 17..607 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:45:51 Download gff for
BS11577.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9849-PA | 1..591 | 17..607 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:17:36 Download gff for
BS11577.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9849-RA | 155..745 | 17..607 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:16:05 Download gff for
BS11577.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9849-RA | 155..745 | 17..607 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:16:05 Download gff for
BS11577.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22937864..22938159 | 312..607 | 100 | -> | Minus |
2R | 22938490..22938784 | 17..311 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:17:36 Download gff for
BS11577.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18826013..18826307 | 17..311 | 100 | | Minus |
arm_2R | 18825387..18825682 | 312..607 | 100 | -> | Minus |
BS11577.5prime Sequence
621 bp (620 high quality bases) assembled on 2006-05-08
> BS11577.5prime
GAAGTTATCAGTCGACATGCTAATCGCCTGGTTAGTGCTTGCCGCCACTT
TGAGCCGATCCATCAGAGCCAGCACCACGATATCGATACCGATCACAACG
CAGGACATAATAGCGGGTGACGTGTTTTTTGAAATCCTGTCCCCCTCGGA
ACTGGAATACACGTACCGGCTGCGCCCGGCCAAGGACTTTGGATCCGCCT
TCTCGGAGCGACTGGAGGGTGTGCCGCTAGTGATTACAGATCCCCCCGGC
GCCTGCCAGGAGATCCGGAACGCCAGAGATCTGAATGGGGGCGTCGCACT
CATTGATCGAGGGGAGTGTTCCTTCCTCACGAAGACACTTCGAGCGGAGG
CAGCTGGCGCATTGGCTGCAATCATCACTGAGTACAATCCCAGCTCTCCA
GAGTTTGAGCACTACATCGAGATGATACATGACAACTCCCAACAGGACGC
CAACATACCGGCCGGCTTTCTTCTCGGGAAGAATGGCGTCATCATCCGGT
CGACGCTGCAGCGGCTGAAGAGGGTGCACGCCCTGATCAACATACCGGTC
AACCTCACCTTTACCCCGCCATCTAAGATTAATCATCCGCCGTGGCTGGG
CTGGTGAAAGCTTTCTAGACC
BS11577.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:11:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9849-PA | 591 | CG9849-RA | 1..591 | 17..607 | 2955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:26:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9849-RB | 920 | CG9849-RB | 89..679 | 17..607 | 2955 | 100 | Plus |
CG9849-RA | 986 | CG9849-RA | 155..745 | 17..607 | 2955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:25:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22937864..22938160 | 17..313 | 1485 | 100 | Plus |
2R | 25286936 | 2R | 22938489..22938784 | 312..607 | 1480 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:25:58 has no hits.
BS11577.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:13:31 Download gff for
BS11577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9849-PA | 1..591 | 17..607 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:45:52 Download gff for
BS11577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9849-PA | 1..591 | 17..607 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:39:25 Download gff for
BS11577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9849-RA | 155..745 | 17..607 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:27:55 Download gff for
BS11577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9849-RA | 155..745 | 17..607 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:27:55 Download gff for
BS11577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22938490..22938784 | 313..607 | 100 | | Plus |
2R | 22937864..22938159 | 17..312 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:39:25 Download gff for
BS11577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18825387..18825682 | 17..312 | 100 | -> | Plus |
arm_2R | 18826013..18826307 | 313..607 | 100 | | Plus |
BS11577.complete Sequence
623 bp assembled on 2006-11-01
GenBank Submission: FJ636907
> BS11577.complete
GAAGTTATCAGTCGACATGCTAATCGCCTGGTTAGTGCTTGCCGCCACTT
TGAGCCGATCCATCAGAGCCAGCACCACGATATCGATACCGATCACAACG
CAGGACATAATAGCGGGTGACGTGTTTTTTGAAATCCTGTCCCCCTCGGA
ACTGGAATACACGTACCGGCTGCGCCCGGCCAAGGACTTTGGATCCGCCT
TCTCGGAGCGACTGGAGGGTGTGCCGCTAGTGATTACAGATCCCCCCGGC
GCCTGCCAGGAGATCCGGAACGCCAGAGATCTGAATGGGGGCGTCGCACT
CATTGATCGAGGGGAGTGTTCCTTCCTCACGAAGACACTTCGAGCGGAGG
CAGCTGGCGCATTGGCTGCAATCATCACTGAGTACAATCCCAGCTCTCCA
GAGTTTGAGCACTACATCGAGATGATACATGACAACTCCCAACAGGACGC
CAACATACCGGCCGGCTTTCTTCTCGGGAAGAATGGCGTCATCATCCGGT
CGACGCTGCAGCGGCTGAAGAGGGTGCACGCCCTGATCAACATACCGGTC
AACCTCACCTTTACCCCGCCATCTAAGATTAATCATCCGCCGTGGCTGGG
CTGGTGAAAGCTTTCTAGACCAT
BS11577.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:13:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9849-RB | 591 | CG9849-PB | 1..591 | 17..607 | 2955 | 100 | Plus |
CG9849-RA | 591 | CG9849-PA | 1..591 | 17..607 | 2955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9849-RB | 920 | CG9849-RB | 89..679 | 17..607 | 2955 | 100 | Plus |
CG9849-RA | 986 | CG9849-RA | 155..745 | 17..607 | 2955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22937864..22938160 | 17..313 | 1485 | 100 | Plus |
2R | 25286936 | 2R | 22938489..22938784 | 312..607 | 1480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:13:04 has no hits.
BS11577.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:53 Download gff for
BS11577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9849-RA | 1..591 | 17..607 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:51 Download gff for
BS11577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9849-RA | 155..745 | 17..607 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:16 Download gff for
BS11577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9849-RA | 155..744 | 17..606 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:54 Download gff for
BS11577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9849-RA | 155..745 | 17..607 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:32 Download gff for
BS11577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9849-RA | 155..744 | 17..606 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:32 Download gff for
BS11577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22937864..22938159 | 17..312 | 100 | -> | Plus |
2R | 22938490..22938783 | 313..606 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:16 Download gff for
BS11577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18825387..18825682 | 17..312 | 100 | -> | Plus |
arm_2R | 18826013..18826306 | 313..606 | 100 | | Plus |
BS11577.pep Sequence
Translation from 16 to 606
> BS11577.pep
MLIAWLVLAATLSRSIRASTTISIPITTQDIIAGDVFFEILSPSELEYTY
RLRPAKDFGSAFSERLEGVPLVITDPPGACQEIRNARDLNGGVALIDRGE
CSFLTKTLRAEAAGALAAIITEYNPSSPEFEHYIEMIHDNSQQDANIPAG
FLLGKNGVIIRSTLQRLKRVHALINIPVNLTFTPPSKINHPPWLGW*
BS11577.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9849-PB | 196 | CG9849-PB | 1..196 | 1..196 | 1008 | 100 | Plus |
CG9849-PA | 196 | CG9849-PA | 1..196 | 1..196 | 1008 | 100 | Plus |