Clone BS11577 Report

Search the DGRC for BS11577

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:115
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG9849-RA
Protein status:BS11577.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11577.3prime Sequence

621 bp (620 high quality bases) assembled on 2006-05-08

> BS11577.3prime
ATGGTCTAGAAAGCTTTCACCAGCCCAGCCACGGCGGATGATTAATCTTA
GATGGCGGGGTAAAGGTGAGGTTGACCGGTATGTTGATCAGGGCGTGCAC
CCTCTTCAGCCGCTGCAGCGTCGACCGGATGATGACGCCATTCTTCCCGA
GAAGAAAGCCGGCCGGTATGTTGGCGTCCTGTTGGGAGTTGTCATGTATC
ATCTCGATGTAGTGCTCAAACTCTGGAGAGCTGGGATTGTACTCAGTGAT
GATTGCAGCCAATGCGCCAGCTGCCTCCGCTCGAAGTGTCTTCGTGAGGA
AGGAACACTCCCCTCGATCAATGAGTGCGACGCCCCCATTCAGATCTCTG
GCGTTCCGGATCTCCTGGCAGGCGCCGGGGGGATCTGTAATCACTAGCGG
CACACCCTCCAGTCGCTCCGAGAAGGCGGATCCAAAGTCCTTGGCCGGGC
GCAGCCGGTACGTGTATTCCAGTTCCGAGGGGGACAGGATTTCAAAAAAC
ACGTCACCCGCTATTATGTCCTGCGTTGTGATCGGTATCGATATCGTGGT
GCTGGCTCTGATGGATCGGCTCAAAGTGGCGGCAAGCACTAACCAGGCGA
TTAGCATGTCGACTGATAACT

BS11577.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:11:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG9849-PA 591 CG9849-RA 1..591 607..17 2955 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9849-RB 920 CG9849-RB 89..679 607..17 2955 100 Minus
CG9849-RA 986 CG9849-RA 155..745 607..17 2955 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:39:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22937864..22938160 607..311 1485 100 Minus
2R 25286936 2R 22938489..22938784 312..17 1480 100 Minus
Blast to na_te.dros performed on 2015-02-12 12:39:19 has no hits.

BS11577.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:13:30 Download gff for BS11577.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9849-PA 1..591 17..607 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:45:51 Download gff for BS11577.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9849-PA 1..591 17..607 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:17:36 Download gff for BS11577.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9849-RA 155..745 17..607 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:16:05 Download gff for BS11577.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9849-RA 155..745 17..607 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:16:05 Download gff for BS11577.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22937864..22938159 312..607 100 -> Minus
2R 22938490..22938784 17..311 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:17:36 Download gff for BS11577.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18826013..18826307 17..311 100   Minus
arm_2R 18825387..18825682 312..607 100 -> Minus

BS11577.5prime Sequence

621 bp (620 high quality bases) assembled on 2006-05-08

> BS11577.5prime
GAAGTTATCAGTCGACATGCTAATCGCCTGGTTAGTGCTTGCCGCCACTT
TGAGCCGATCCATCAGAGCCAGCACCACGATATCGATACCGATCACAACG
CAGGACATAATAGCGGGTGACGTGTTTTTTGAAATCCTGTCCCCCTCGGA
ACTGGAATACACGTACCGGCTGCGCCCGGCCAAGGACTTTGGATCCGCCT
TCTCGGAGCGACTGGAGGGTGTGCCGCTAGTGATTACAGATCCCCCCGGC
GCCTGCCAGGAGATCCGGAACGCCAGAGATCTGAATGGGGGCGTCGCACT
CATTGATCGAGGGGAGTGTTCCTTCCTCACGAAGACACTTCGAGCGGAGG
CAGCTGGCGCATTGGCTGCAATCATCACTGAGTACAATCCCAGCTCTCCA
GAGTTTGAGCACTACATCGAGATGATACATGACAACTCCCAACAGGACGC
CAACATACCGGCCGGCTTTCTTCTCGGGAAGAATGGCGTCATCATCCGGT
CGACGCTGCAGCGGCTGAAGAGGGTGCACGCCCTGATCAACATACCGGTC
AACCTCACCTTTACCCCGCCATCTAAGATTAATCATCCGCCGTGGCTGGG
CTGGTGAAAGCTTTCTAGACC

BS11577.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:11:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG9849-PA 591 CG9849-RA 1..591 17..607 2955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:26:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG9849-RB 920 CG9849-RB 89..679 17..607 2955 100 Plus
CG9849-RA 986 CG9849-RA 155..745 17..607 2955 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:25:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22937864..22938160 17..313 1485 100 Plus
2R 25286936 2R 22938489..22938784 312..607 1480 100 Plus
Blast to na_te.dros performed on 2015-02-13 08:25:58 has no hits.

BS11577.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:13:31 Download gff for BS11577.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9849-PA 1..591 17..607 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:45:52 Download gff for BS11577.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9849-PA 1..591 17..607 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:39:25 Download gff for BS11577.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9849-RA 155..745 17..607 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:27:55 Download gff for BS11577.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9849-RA 155..745 17..607 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:27:55 Download gff for BS11577.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22938490..22938784 313..607 100   Plus
2R 22937864..22938159 17..312 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:39:25 Download gff for BS11577.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18825387..18825682 17..312 100 -> Plus
arm_2R 18826013..18826307 313..607 100   Plus

BS11577.complete Sequence

623 bp assembled on 2006-11-01

GenBank Submission: FJ636907

> BS11577.complete
GAAGTTATCAGTCGACATGCTAATCGCCTGGTTAGTGCTTGCCGCCACTT
TGAGCCGATCCATCAGAGCCAGCACCACGATATCGATACCGATCACAACG
CAGGACATAATAGCGGGTGACGTGTTTTTTGAAATCCTGTCCCCCTCGGA
ACTGGAATACACGTACCGGCTGCGCCCGGCCAAGGACTTTGGATCCGCCT
TCTCGGAGCGACTGGAGGGTGTGCCGCTAGTGATTACAGATCCCCCCGGC
GCCTGCCAGGAGATCCGGAACGCCAGAGATCTGAATGGGGGCGTCGCACT
CATTGATCGAGGGGAGTGTTCCTTCCTCACGAAGACACTTCGAGCGGAGG
CAGCTGGCGCATTGGCTGCAATCATCACTGAGTACAATCCCAGCTCTCCA
GAGTTTGAGCACTACATCGAGATGATACATGACAACTCCCAACAGGACGC
CAACATACCGGCCGGCTTTCTTCTCGGGAAGAATGGCGTCATCATCCGGT
CGACGCTGCAGCGGCTGAAGAGGGTGCACGCCCTGATCAACATACCGGTC
AACCTCACCTTTACCCCGCCATCTAAGATTAATCATCCGCCGTGGCTGGG
CTGGTGAAAGCTTTCTAGACCAT

BS11577.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:13:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG9849-RB 591 CG9849-PB 1..591 17..607 2955 100 Plus
CG9849-RA 591 CG9849-PA 1..591 17..607 2955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG9849-RB 920 CG9849-RB 89..679 17..607 2955 100 Plus
CG9849-RA 986 CG9849-RA 155..745 17..607 2955 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22937864..22938160 17..313 1485 100 Plus
2R 25286936 2R 22938489..22938784 312..607 1480 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:13:04 has no hits.

BS11577.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:53 Download gff for BS11577.complete
Subject Subject Range Query Range Percent Splice Strand
CG9849-RA 1..591 17..607 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:51 Download gff for BS11577.complete
Subject Subject Range Query Range Percent Splice Strand
CG9849-RA 155..745 17..607 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:16 Download gff for BS11577.complete
Subject Subject Range Query Range Percent Splice Strand
CG9849-RA 155..744 17..606 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:54 Download gff for BS11577.complete
Subject Subject Range Query Range Percent Splice Strand
CG9849-RA 155..745 17..607 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:32 Download gff for BS11577.complete
Subject Subject Range Query Range Percent Splice Strand
CG9849-RA 155..744 17..606 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:32 Download gff for BS11577.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22937864..22938159 17..312 100 -> Plus
2R 22938490..22938783 313..606 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:16 Download gff for BS11577.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18825387..18825682 17..312 100 -> Plus
arm_2R 18826013..18826306 313..606 100   Plus

BS11577.pep Sequence

Translation from 16 to 606

> BS11577.pep
MLIAWLVLAATLSRSIRASTTISIPITTQDIIAGDVFFEILSPSELEYTY
RLRPAKDFGSAFSERLEGVPLVITDPPGACQEIRNARDLNGGVALIDRGE
CSFLTKTLRAEAAGALAAIITEYNPSSPEFEHYIEMIHDNSQQDANIPAG
FLLGKNGVIIRSTLQRLKRVHALINIPVNLTFTPPSKINHPPWLGW*

BS11577.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG9849-PB 196 CG9849-PB 1..196 1..196 1008 100 Plus
CG9849-PA 196 CG9849-PA 1..196 1..196 1008 100 Plus