Clone Sequence Records
BS11581.3prime Sequence
862 bp (806 high quality bases) assembled on 2006-05-08
> BS11581.3prime
ATGGTCTAGAAAGCTTTTATCCCTTCTTGAACTTGAGCAGCAGGATGGTA
AGTACGAGGAATACCAGAACCCAGGAAGAAATGGAAATAAACCCATTGTA
GACGACGGGATTGTCGATGCCCCAGCCGCGTTGCAGTATGGATCGCATTG
ATTCCGTTGGTTTGGTGAGCGGCAGGAAGGCTGTGAAGAACTGCAGAAGC
GGGAACATGCCCTCGATCGGCCAGATAATGCCGCACAACATAACGATGGG
CAAGAACGAGCCCATCGCCACATAAGTCGCAGTTCGCTCCGTGTCCACAG
CACAGGAAATAACGAATCCGAAGCTCATGCCACACAGTCCATTCAGGATG
CAGAGTGCCACCACCAGCCATATGTTACCCACCAAGGTAAGTTCGAAGAA
GTAGAAGCTGACAATCAGTACGAAGGTCGTCTGGCTTAGCATCACCGTGA
ACTGGGTGACCACCTGGGAGAGAAGAATCTCCGGACCCGTGATTCCAGCT
ACCAAACAACGCTCCAACATGCCCTCATTCCGATCAATTAACATAGCTCC
GGAGGTAACAGCCACGGCCAAAAAGAAGATGATCGTCAGGATAACTCCGG
GAGCAGCAAAGTCTGTGAAATTGGGATTGCGATAGCCATAAACAGGATGC
TGGAAGTCCACGGGCACACGACCTAGTTTCGGATTCACATCACAGTCGCT
TAGCATGTCACCCACAAAGTTGAAGAATGTGTACTGGAGATCGCGGTACA
GCAACTGTGAGATTTGTTGATTTGACCAGTCCATTCGTACTGCTAGGTCC
GAGGACTCAATAGTTCCATCTTCGGCATACCGACCATCCCTCACGCGTTC
CATCAGAGATGC
BS11581.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:11:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33970-PA | 2334 | CG33970-RA | 1489..2334 | 862..17 | 4180 | 99.7 | Minus |
CG33970-PB | 1557 | CG33970-RB | 712..1557 | 862..17 | 4180 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:20:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33970-RC | 3989 | CG33970-RC | 2120..2965 | 862..17 | 4200 | 99.8 | Minus |
CG33970-RB | 2072 | CG33970-RB | 805..1650 | 862..17 | 4200 | 99.8 | Minus |
CG33970-RA | 3387 | CG33970-RA | 2120..2965 | 862..17 | 4200 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:20:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26360810..26361564 | 771..17 | 3775 | 100 | Minus |
3R | 32079331 | 3R | 26360651..26360741 | 862..772 | 425 | 97.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:20:49 has no hits.
BS11581.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:13:37 Download gff for
BS11581.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33970-PA | 1489..2334 | 17..862 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:46:02 Download gff for
BS11581.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33970-PB | 712..1557 | 17..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:11:30 Download gff for
BS11581.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33970-RA | 2120..2973 | 8..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:37:06 Download gff for
BS11581.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33970-RA | 2120..2973 | 8..862 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:37:06 Download gff for
BS11581.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26360651..26360741 | 772..862 | 97 | -> | Minus |
3R | 26360810..26361572 | 8..771 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:11:30 Download gff for
BS11581.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22186373..22186463 | 772..862 | 97 | -> | Minus |
arm_3R | 22186532..22187294 | 8..771 | 99 | | Minus |
BS11581.5prime Sequence
890 bp (801 high quality bases) assembled on 2006-05-08
> BS11581.5prime
GAAGTTATCAGTCGACATGGACGCCGCTGCCGACGGAGTACCGCCAACGG
CGCCAGCTGCGACGGCGACGACGGCCAACAGTGATCTGGACTTGGCGGCA
CGTCGGCGTCTCTTCATCTCACAGCCCTCGACGCTGGCGACGCGCCGCCA
GCAGGCGGTTTGTGTGCGGCGGGCCCACAAAATGTATGGCAGCAGCAAGA
ACCCCAACGTTGTCCTCGACGGCCTGAACATGACAGTGCCCAAGGGTTCC
ATATATGGTCTCTTGGGCGCATCTGGATGCGGGAAAACAACGCTGCTCAG
CTGCATCGTCGGACGACGTCGCCTTAATTCTGGCGAGATTTGGGTACTCG
GCGGGCGACCCGGATCTCGGGGTTCCGGAGTGCCTGGACCCCGGATTGGC
TATATGCCACAGGAGATAGCCCTTTACGGCGAGTTCACGATGCGTGAGAC
CTTAATCTACTTCGGCATCATTTCTGCCATGTCCAAAGGCGACATCGAGG
ATCGTACAGAATTCCTTCTCAAATTACTTAATTTGCCAAATGCCTCCAAA
TTTGTCAAGAATCTGAGTGGCGGCCAGCAGCGGCGAGTGAGTCTGGCGGT
GGCTCTGCTCCATGAGCCGGAGCTACTCATCCTGGATGAGCCCACAGTGG
GGGTGGACCCCGTTTTGCGTCAGAGCATCTGGGATCATTTGGTGGACATT
ACGAAAAATGGTCACACGACTGTGATAATCACCACGCATTACATCGACGA
GTGTGCCCAGGCGCATATGATCGGTCTACTGCGTGGTGGAAAAATGCTGG
CAGAGGAATCGCCGGACTATCTGCGTCAGCAGTATAATGCCGACTCGCTG
GAGGATGTCTTCCTGAAGCTCTCGGTTTTGCAGAACATGG
BS11581.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:11:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33970-PA | 2334 | CG33970-RA | 1..874 | 17..890 | 4370 | 100 | Plus |
CG33970-PB | 1557 | CG33970-RB | 1..97 | 794..890 | 485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:20:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33970-RC | 3989 | CG33970-RC | 628..1505 | 13..890 | 4375 | 99.9 | Plus |
CG33970-RA | 3387 | CG33970-RA | 628..1505 | 13..890 | 4375 | 99.9 | Plus |
CG33970-RB | 2072 | CG33970-RB | 70..190 | 770..890 | 605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:19:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26349599..26349864 | 410..675 | 1330 | 100 | Plus |
3R | 32079331 | 3R | 26331404..26331643 | 13..252 | 1185 | 99.6 | Plus |
3R | 32079331 | 3R | 26348914..26349074 | 253..413 | 805 | 100 | Plus |
3R | 32079331 | 3R | 26355599..26355720 | 769..890 | 610 | 100 | Plus |
3R | 32079331 | 3R | 26350078..26350173 | 674..769 | 480 | 100 | Plus |
3R | 32079331 | 3R | 28692548..28692742 | 557..751 | 240 | 74.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:20:00 has no hits.
BS11581.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:13:38 Download gff for
BS11581.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33970-PA | 1..874 | 17..890 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:46:03 Download gff for
BS11581.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33970-PA | 1..874 | 17..890 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:10:03 Download gff for
BS11581.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33970-RA | 628..1505 | 13..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:10:15 Download gff for
BS11581.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33970-RA | 628..1505 | 13..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:10:15 Download gff for
BS11581.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26331404..26331643 | 13..252 | 99 | -> | Plus |
3R | 26348914..26349073 | 253..412 | 100 | -> | Plus |
3R | 26349602..26349864 | 413..675 | 100 | -> | Plus |
3R | 26350080..26350173 | 676..769 | 100 | -> | Plus |
3R | 26355600..26355720 | 770..890 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:10:03 Download gff for
BS11581.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22157126..22157365 | 13..252 | 99 | -> | Plus |
arm_3R | 22174636..22174795 | 253..412 | 100 | -> | Plus |
arm_3R | 22175324..22175586 | 413..675 | 100 | -> | Plus |
arm_3R | 22175802..22175895 | 676..769 | 100 | -> | Plus |
arm_3R | 22181322..22181442 | 770..890 | 100 | | Plus |
BS11581.complete Sequence
2366 bp assembled on 2010-05-13
GenBank Submission: KX804212
> BS11581.complete
GAAGTTATCAGTCGACATGGACGCCGCTGCCGACGGAGTACCGCCAACGG
CGCCAGCTGCGACGGCGACGACGGCCAACAGTGATCTGGACTTGGCGGCA
CGTCGGCGTCTCTTCATCTCACAGCCCTCGACGCTGGCGACGCGCCGCCA
GCAGGCGGTTTGTGTGCGGCGGGCCCACAAAATGTATGGCAGCAGCAAGA
ACCCCAACGTTGTCCTCGACGGCCTGAACATGACAGTGCCCAAGGGTTCC
ATATATGGTCTCTTGGGCGCATCTGGATGCGGGAAAACAACGCTGCTCAG
CTGCATCGTCGGACGACGTCGCCTTAATTCTGGCGAGATTTGGGTACTCG
GCGGGCGACCCGGATCTCGGGGTTCCGGAGTGCCTGGACCCCGGATTGGC
TATATGCCACAGGAGATAGCCCTTTACGGCGAGTTCACGATGCGTGAGAC
CTTAATCTACTTCGGCATCATTTCTGCCATGTCCAAAGGCGACATCGAGG
ATCGTACAGAATTCCTTCTCAAATTACTTAATTTGCCAAATGCCTCCAAA
TTTGTCAAGAATCTGAGTGGCGGCCAGCAGCGGCGAGTGAGTCTGGCGGT
GGCTCTGCTCCATGAGCCGGAGCTACTCATCCTGGATGAGCCCACAGTGG
GGGTGGACCCCGTTTTGCGTCAGAGCATCTGGGATCATTTGGTGGACATT
ACGAAAAATGGTCACACGACTGTGATAATCACCACGCATTACATCGACGA
GTGTGCCCAGGCGCATATGATCGGTCTACTGCGTGGTGGAAAAATGCTGG
CAGAGGAATCGCCGGACTATCTGCGTCAGCAGTATAATGCCGACTCGCTG
GAGGATGTCTTCCTGAAGCTCTCGGTTTTGCAGAACATGGGAAAACGCCG
CCGATCGTCGATAGCTCAGGAAATTGTGGAACAGGTAACGGTGCCGGCGA
TCTCTAATCCCGCCTTGGACATGTCCGATGAGCAGCATGCCGCCGAAATT
TCCGGCGAGTTCGGTGACAACATTTCAATGTCGTCCGCGGCTCGAGATCC
GATCAGTACAACCGCACCCGCAGCTCCGCCTTTGCCACCGCCCCAGGAAA
TACCCACATCCTTCTGGTATAATCTACATGTGATGCAGTCGCATCACCTG
CACGCCCTCATCTGGAAAAACTTCTTGTGGATGATGCGCAACGTGGGGGT
GATGCTGTTCATCGTGGGTCTGCCCGTGGTGCAGATACTGCTCTTCTGTT
ACGCCATCGGCCATGATCCCACTGGCCTCAAATTGGCCGTGGCGAATCAC
GAGATGTCGGGGGAAATGATTATGGAACAATTCTGTCCAGTGCACACCGG
ATGCAATCAGACGATGCTGAGCTGCCGTTATCTCGATATGCTGGTCAAGA
ACAAGAGCATGGTTGTGCAATATGTGACCGACGATGAAATGGCTTACGAA
GAAGTAAGAAAAGGTAGAGCCTGGGCCGCCCTGGTAATCCAACCCAACTA
TACCGCATCTCTGATGGAACGCGTGGAGGATGGTCGGTATGCCGAAGATG
GAACTATTGAGTCCTCGGACCTAGCAGTACGAATGGACTGGTCAAATCAA
CAAATCTCACAGTTGCTGTACCGCGATCTCCAGTACACATTCTTCAACTT
TGTGGGTGACATGCTAAGCGACTGTGATGTGAATCCGAAACTAGGTCGTG
TGCCCGTGGACTTCCAGCATCCTGTTTATGGCTATCGCAATCCCAATTTC
ACAGACTTTGCTGCTCCCGGAGTTATCCTGACGATCATCTTCTTTTTGGC
CGTGGCTGTTACCTCCGGAGCTATGTTAATTGATCGGAATGAGGGCATGT
TGGAGCGTTGTTTGGTAGCTGGAATCACGGGTCCGGAGATTCTTCTCTCC
CAGGTGGTCACCCAGTTCACGGTGATGCTAAGCCAGACGACCTTCGTACT
GATTGTCAGCTTCTACTTCTTCGAACTTACCTTGGTGGGTAACATATGGC
TGGTGGTGGCACTCTGCATCCTGAATGGACTGTGTGGCATGAGCTTCGGA
TTCGTTATTTCCTGTGCTGTGGACACGGAGCGAACTGCGACTTATGTGGC
GATGGGCTCGTTCTTGCCCATCGTTATGTTGTGCGGCATTATCTGGCCGA
TCGAGGGCATGTTCCCGCTTCTGCAGTTCTTCACAGCCTTCCTGCCGCTC
ACCAAACCAACGGAATCAATGCGATCCATACTGCAACGCGGCTGGGGCAT
CGACAATCCCGTCGTCTACAATGGGTTTATTTCCATTTCTTCCTGGGTTC
TGGTATTCCTCGTACTTACCATCCTGCTGCTCAAGTTCAAGAAGGGATAA
AAGCTTTCTAGACCAT
BS11581.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:17:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33970-RC | 2334 | CG33970-PC | 1..2334 | 17..2350 | 11670 | 100 | Plus |
CG33970-RA | 2334 | CG33970-PA | 1..2334 | 17..2350 | 11670 | 100 | Plus |
CG33970-RB | 1557 | CG33970-PB | 1..1557 | 794..2350 | 7785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:17:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33970-RC | 3989 | CG33970-RC | 628..2965 | 13..2350 | 11675 | 100 | Plus |
CG33970-RA | 3387 | CG33970-RA | 628..2965 | 13..2350 | 11675 | 100 | Plus |
CG33970-RB | 2072 | CG33970-RB | 70..1650 | 770..2350 | 7905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:17:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26360810..26361564 | 1596..2350 | 3775 | 100 | Plus |
3R | 32079331 | 3R | 26355599..26356028 | 769..1198 | 2150 | 100 | Plus |
3R | 32079331 | 3R | 26349599..26349864 | 410..675 | 1330 | 100 | Plus |
3R | 32079331 | 3R | 26331404..26331643 | 13..252 | 1185 | 99.6 | Plus |
3R | 32079331 | 3R | 26356215..26356435 | 1197..1417 | 1105 | 100 | Plus |
3R | 32079331 | 3R | 26360563..26360741 | 1417..1595 | 895 | 100 | Plus |
3R | 32079331 | 3R | 26348914..26349074 | 253..413 | 805 | 100 | Plus |
3R | 32079331 | 3R | 26350078..26350173 | 674..769 | 480 | 100 | Plus |
3R | 32079331 | 3R | 28692548..28692742 | 557..751 | 240 | 74.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:17:25 has no hits.
BS11581.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-13 14:01:15 Download gff for
BS11581.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33970-RA | 629..2960 | 17..2348 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:42 Download gff for
BS11581.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33970-RA | 632..2963 | 17..2348 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:57 Download gff for
BS11581.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33970-RA | 632..2963 | 17..2348 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:57 Download gff for
BS11581.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26348914..26349073 | 253..412 | 100 | -> | Plus |
3R | 26331408..26331643 | 17..252 | 100 | -> | Plus |
3R | 26349602..26349864 | 413..675 | 100 | -> | Plus |
3R | 26350080..26350173 | 676..769 | 100 | -> | Plus |
3R | 26355600..26356027 | 770..1197 | 100 | -> | Plus |
3R | 26356216..26356435 | 1198..1417 | 100 | -> | Plus |
3R | 26360564..26360741 | 1418..1595 | 100 | -> | Plus |
3R | 26360810..26361562 | 1596..2348 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:42 Download gff for
BS11581.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22186286..22186463 | 1418..1595 | 100 | -> | Plus |
arm_3R | 22174636..22174795 | 253..412 | 100 | -> | Plus |
arm_3R | 22175324..22175586 | 413..675 | 100 | -> | Plus |
arm_3R | 22157130..22157365 | 17..252 | 100 | -> | Plus |
arm_3R | 22175802..22175895 | 676..769 | 100 | -> | Plus |
arm_3R | 22181938..22182157 | 1198..1417 | 100 | -> | Plus |
arm_3R | 22181322..22181749 | 770..1197 | 100 | -> | Plus |
arm_3R | 22186532..22187284 | 1596..2348 | 100 | | Plus |
BS11581.pep Sequence
Translation from 16 to 2349
> BS11581.pep
MDAAADGVPPTAPAATATTANSDLDLAARRRLFISQPSTLATRRQQAVCV
RRAHKMYGSSKNPNVVLDGLNMTVPKGSIYGLLGASGCGKTTLLSCIVGR
RRLNSGEIWVLGGRPGSRGSGVPGPRIGYMPQEIALYGEFTMRETLIYFG
IISAMSKGDIEDRTEFLLKLLNLPNASKFVKNLSGGQQRRVSLAVALLHE
PELLILDEPTVGVDPVLRQSIWDHLVDITKNGHTTVIITTHYIDECAQAH
MIGLLRGGKMLAEESPDYLRQQYNADSLEDVFLKLSVLQNMGKRRRSSIA
QEIVEQVTVPAISNPALDMSDEQHAAEISGEFGDNISMSSAARDPISTTA
PAAPPLPPPQEIPTSFWYNLHVMQSHHLHALIWKNFLWMMRNVGVMLFIV
GLPVVQILLFCYAIGHDPTGLKLAVANHEMSGEMIMEQFCPVHTGCNQTM
LSCRYLDMLVKNKSMVVQYVTDDEMAYEEVRKGRAWAALVIQPNYTASLM
ERVEDGRYAEDGTIESSDLAVRMDWSNQQISQLLYRDLQYTFFNFVGDML
SDCDVNPKLGRVPVDFQHPVYGYRNPNFTDFAAPGVILTIIFFLAVAVTS
GAMLIDRNEGMLERCLVAGITGPEILLSQVVTQFTVMLSQTTFVLIVSFY
FFELTLVGNIWLVVALCILNGLCGMSFGFVISCAVDTERTATYVAMGSFL
PIVMLCGIIWPIEGMFPLLQFFTAFLPLTKPTESMRSILQRGWGIDNPVV
YNGFISISSWVLVFLVLTILLLKFKKG*
BS11581.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:33:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33970-PC | 777 | CG33970-PC | 1..777 | 1..777 | 4028 | 100 | Plus |
CG33970-PA | 777 | CG33970-PA | 1..777 | 1..777 | 4028 | 100 | Plus |
CG33970-PB | 518 | CG33970-PB | 1..518 | 260..777 | 2696 | 100 | Plus |
CG9990-PD | 763 | CG9990-PD | 4..763 | 18..777 | 1867 | 51.3 | Plus |
CG9990-PB | 777 | CG9990-PB | 4..777 | 18..777 | 1859 | 50.9 | Plus |