Clone BS11584 Report

Search the DGRC for BS11584

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:115
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptCG1304-RA
Protein status:BS11584.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11584.3prime Sequence

813 bp (812 high quality bases) assembled on 2006-05-08

> BS11584.3prime
ATGGTCTAGAAAGCTTTTATTTCACATCCGAGTTATTCTTAATCCATTCG
TTGTGGTAGTACACCCTGGCATATCCATCTGGATAGCTCGTTCCACAGGC
GGACCACACGAACCCGGCCACGCCCACCACTTGGTTGTTATATACGGCCG
GACCACCGGAGTCCCCATTGCACGCTCCATTATCGGCCTCGTGGATGAGG
CACAACTCGCTCTGGACTCCCCAGCCGATCAGTTCGTCGCACCTCTCCAA
GGAAATGGACTTCAGGGTGTTGTACTGCAGATAGCGTGGCAAGTCTCCCT
GGTGTTTGATCCTTCCCCAGCCGGAAATGATGACGTCCACATCCGCTGGA
GTATCCGCAGTGGGTAGATCGATGGGCTGAATACTCGCGGACAGGATCAG
TGGGCTCTCTAGTCGCAGCAGAGCAACGTCGTTAAGGAAGTTACCATACT
CCTCGTGGACAATTACCTCGGCCACCTGGACAAGGACTCCACCGCTGAAT
CGATCGTTGGAGCCCGCTCGAATGGTGAAACGCTCCGCAGCAATTGGAAC
GGAATTGCCATTTGAGTCCTGATTGGTTACACAATGGGCAGCGGTTAAGA
CGTAGTTCCTGGACAGAATCGAACCTCCACAGCTGTGGGAGCCGGCGTTC
CTCAGGGACACCTGGTGGGGAAACTGATTTTTCACGGCATCCTCACCGCC
CACCACTCGACCGTTGAGGCTACCAGGTGCCGAATGTACGGGCACTGCCA
ACAGCAGCAAAAAGCTACCGAGCAAAATCGCTGCCTTAACGGATCTCATG
TCGACTGATAACT

BS11584.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:11:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG1304-PA 783 CG1304-RA 1..783 799..17 3915 100 Minus
CG2071-PA 780 Ser6-RA 253..542 547..258 1150 95.8 Minus
CG2071-PA 780 Ser6-RA 85..221 715..579 460 93.4 Minus
CG2071-PA 780 Ser6-RA 628..692 172..108 200 92.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:18:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG1304-RA 893 CG1304-RA 17..799 799..17 3915 100 Minus
Ser6-RA 901 CG2071-RA 36..755 782..63 2165 87.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:18:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20964621..20965403 17..799 3915 100 Plus
X 23542271 X 20962751..20963470 63..782 2100 86.7 Plus
Blast to na_te.dros performed on 2015-02-11 10:18:44 has no hits.

BS11584.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:13:44 Download gff for BS11584.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1304-PA 1..783 17..799 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:46:10 Download gff for BS11584.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1304-PA 1..783 17..799 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:02:49 Download gff for BS11584.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1304-RA 17..803 12..799 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:13:57 Download gff for BS11584.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1304-RA 17..803 12..799 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:13:57 Download gff for BS11584.3prime
Subject Subject Range Query Range Percent Splice Strand
X 20964617..20965403 12..799 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:02:49 Download gff for BS11584.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20835644..20836430 12..799 99   Plus

BS11584.5prime Sequence

813 bp (812 high quality bases) assembled on 2006-05-08

> BS11584.5prime
GAAGTTATCAGTCGACATGAGATCCGTTAAGGCAGCGATTTTGCTCGGTA
GCTTTTTGCTGCTGTTGGCAGTGCCCGTACATTCGGCACCTGGTAGCCTC
AACGGTCGAGTGGTGGGCGGTGAGGATGCCGTGAAAAATCAGTTTCCCCA
CCAGGTGTCCCTGAGGAACGCCGGCTCCCACAGCTGTGGAGGTTCGATTC
TGTCCAGGAACTACGTCTTAACCGCTGCCCATTGTGTAACCAATCAGGAC
TCAAATGGCAATTCCGTTCCAATTGCTGCGGAGCGTTTCACCATTCGAGC
GGGCTCCAACGATCGATTCAGCGGTGGAGTCCTTGTCCAGGTGGCCGAGG
TAATTGTCCACGAGGAGTATGGTAACTTCCTTAACGACGTTGCTCTGCTG
CGACTAGAGAGCCCACTGATCCTGTCCGCGAGTATTCAGCCCATCGATCT
ACCCACTGCGGATACTCCAGCGGATGTGGACGTCATCATTTCCGGCTGGG
GAAGGATCAAACACCAGGGAGACTTGCCACGCTATCTGCAGTACAACACC
CTGAAGTCCATTTCCTTGGAGAGGTGCGACGAACTGATCGGCTGGGGAGT
CCAGAGCGAGTTGTGCCTCATCCACGAGGCCGATAATGGAGCGTGCAATG
GGGACTCCGGTGGTCCGGCCGTATATAACAACCAAGTGGTGGGCGTGGCC
GGGTTCGTGTGGTCCGCCTGTGGAACGAGCTATCCAGATGGATATGCCAG
GGTGTACTACCACAACGAATGGATTAAGAATAACTCGGATGTGAAATAAA
AGCTTTCTAGACC

BS11584.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:11:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG1304-PA 783 CG1304-RA 1..783 17..799 3915 100 Plus
CG2071-PA 780 Ser6-RA 253..542 269..558 1150 95.8 Plus
CG2071-PA 780 Ser6-RA 85..221 101..237 460 93.4 Plus
CG2071-PA 780 Ser6-RA 628..692 644..708 200 92.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:53:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG1304-RA 893 CG1304-RA 17..799 17..799 3915 100 Plus
Ser6-RA 901 CG2071-RA 36..755 34..753 2165 87.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:53:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20964621..20965403 799..17 3915 100 Minus
X 23542271 X 20962751..20963470 753..34 2100 86.7 Minus
Blast to na_te.dros performed on 2015-02-11 16:53:07 has no hits.

BS11584.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:13:45 Download gff for BS11584.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1304-PA 1..783 17..799 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:46:12 Download gff for BS11584.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1304-PA 1..783 17..799 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:07:27 Download gff for BS11584.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1304-RA 17..803 17..804 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:54:33 Download gff for BS11584.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1304-RA 17..803 17..804 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:54:33 Download gff for BS11584.5prime
Subject Subject Range Query Range Percent Splice Strand
X 20964617..20965403 17..804 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:07:27 Download gff for BS11584.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20835644..20836430 17..804 99   Minus

BS11584.complete Sequence

815 bp assembled on 2006-11-01

GenBank Submission: FJ636908

> BS11584.complete
GAAGTTATCAGTCGACATGAGATCCGTTAAGGCAGCGATTTTGCTCGGTA
GCTTTTTGCTGCTGTTGGCAGTGCCCGTACATTCGGCACCTGGTAGCCTC
AACGGTCGAGTGGTGGGCGGTGAGGATGCCGTGAAAAATCAGTTTCCCCA
CCAGGTGTCCCTGAGGAACGCCGGCTCCCACAGCTGTGGAGGTTCGATTC
TGTCCAGGAACTACGTCTTAACCGCTGCCCATTGTGTAACCAATCAGGAC
TCAAATGGCAATTCCGTTCCAATTGCTGCGGAGCGTTTCACCATTCGAGC
GGGCTCCAACGATCGATTCAGCGGTGGAGTCCTTGTCCAGGTGGCCGAGG
TAATTGTCCACGAGGAGTATGGTAACTTCCTTAACGACGTTGCTCTGCTG
CGACTAGAGAGCCCACTGATCCTGTCCGCGAGTATTCAGCCCATCGATCT
ACCCACTGCGGATACTCCAGCGGATGTGGACGTCATCATTTCCGGCTGGG
GAAGGATCAAACACCAGGGAGACTTGCCACGCTATCTGCAGTACAACACC
CTGAAGTCCATTTCCTTGGAGAGGTGCGACGAACTGATCGGCTGGGGAGT
CCAGAGCGAGTTGTGCCTCATCCACGAGGCCGATAATGGAGCGTGCAATG
GGGACTCCGGTGGTCCGGCCGTATATAACAACCAAGTGGTGGGCGTGGCC
GGGTTCGTGTGGTCCGCCTGTGGAACGAGCTATCCAGATGGATATGCCAG
GGTGTACTACCACAACGAATGGATTAAGAATAACTCGGATGTGAAATAAA
AGCTTTCTAGACCAT

BS11584.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG1304-RA 783 CG1304-PA 1..783 17..799 3915 100 Plus
Ser6-RA 780 CG2071-PA 18..737 34..753 2100 86.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG1304-RA 893 CG1304-RA 17..799 17..799 3915 100 Plus
Ser6-RA 901 CG2071-RA 36..755 34..753 2100 86.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:42:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20964621..20965403 799..17 3915 100 Minus
X 23542271 X 20962751..20963470 753..34 2100 86.7 Minus
Blast to na_te.dros performed on 2014-11-27 16:42:04 has no hits.

BS11584.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:51 Download gff for BS11584.complete
Subject Subject Range Query Range Percent Splice Strand
CG1304-RA 1..783 17..799 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:48 Download gff for BS11584.complete
Subject Subject Range Query Range Percent Splice Strand
CG1304-RA 14..800 17..804 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:59 Download gff for BS11584.complete
Subject Subject Range Query Range Percent Splice Strand
CG1304-RA 17..797 17..797 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:51 Download gff for BS11584.complete
Subject Subject Range Query Range Percent Splice Strand
CG1304-RA 14..800 17..804 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:43 Download gff for BS11584.complete
Subject Subject Range Query Range Percent Splice Strand
CG1304-RA 17..797 17..797 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:43 Download gff for BS11584.complete
Subject Subject Range Query Range Percent Splice Strand
X 20964623..20965403 17..797 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:59 Download gff for BS11584.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20835650..20836430 17..797 100   Minus

BS11584.pep Sequence

Translation from 16 to 798

> BS11584.pep
MRSVKAAILLGSFLLLLAVPVHSAPGSLNGRVVGGEDAVKNQFPHQVSLR
NAGSHSCGGSILSRNYVLTAAHCVTNQDSNGNSVPIAAERFTIRAGSNDR
FSGGVLVQVAEVIVHEEYGNFLNDVALLRLESPLILSASIQPIDLPTADT
PADVDVIISGWGRIKHQGDLPRYLQYNTLKSISLERCDELIGWGVQSELC
LIHEADNGACNGDSGGPAVYNNQVVGVAGFVWSACGTSYPDGYARVYYHN
EWIKNNSDVK*

BS11584.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG1304-PA 260 CG1304-PA 1..260 1..260 1364 100 Plus
Ser6-PA 259 CG2071-PA 5..259 5..259 1127 82.7 Plus
CG9676-PA 251 CG9676-PA 7..251 12..259 504 45.6 Plus
CG32523-PA 262 CG32523-PA 24..256 19..253 443 43.3 Plus
CG4653-PA 254 CG4653-PA 37..253 44..257 433 40.9 Plus