Clone Sequence Records
BS11584.3prime Sequence
813 bp (812 high quality bases) assembled on 2006-05-08
> BS11584.3prime
ATGGTCTAGAAAGCTTTTATTTCACATCCGAGTTATTCTTAATCCATTCG
TTGTGGTAGTACACCCTGGCATATCCATCTGGATAGCTCGTTCCACAGGC
GGACCACACGAACCCGGCCACGCCCACCACTTGGTTGTTATATACGGCCG
GACCACCGGAGTCCCCATTGCACGCTCCATTATCGGCCTCGTGGATGAGG
CACAACTCGCTCTGGACTCCCCAGCCGATCAGTTCGTCGCACCTCTCCAA
GGAAATGGACTTCAGGGTGTTGTACTGCAGATAGCGTGGCAAGTCTCCCT
GGTGTTTGATCCTTCCCCAGCCGGAAATGATGACGTCCACATCCGCTGGA
GTATCCGCAGTGGGTAGATCGATGGGCTGAATACTCGCGGACAGGATCAG
TGGGCTCTCTAGTCGCAGCAGAGCAACGTCGTTAAGGAAGTTACCATACT
CCTCGTGGACAATTACCTCGGCCACCTGGACAAGGACTCCACCGCTGAAT
CGATCGTTGGAGCCCGCTCGAATGGTGAAACGCTCCGCAGCAATTGGAAC
GGAATTGCCATTTGAGTCCTGATTGGTTACACAATGGGCAGCGGTTAAGA
CGTAGTTCCTGGACAGAATCGAACCTCCACAGCTGTGGGAGCCGGCGTTC
CTCAGGGACACCTGGTGGGGAAACTGATTTTTCACGGCATCCTCACCGCC
CACCACTCGACCGTTGAGGCTACCAGGTGCCGAATGTACGGGCACTGCCA
ACAGCAGCAAAAAGCTACCGAGCAAAATCGCTGCCTTAACGGATCTCATG
TCGACTGATAACT
BS11584.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:11:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1304-PA | 783 | CG1304-RA | 1..783 | 799..17 | 3915 | 100 | Minus |
CG2071-PA | 780 | Ser6-RA | 253..542 | 547..258 | 1150 | 95.8 | Minus |
CG2071-PA | 780 | Ser6-RA | 85..221 | 715..579 | 460 | 93.4 | Minus |
CG2071-PA | 780 | Ser6-RA | 628..692 | 172..108 | 200 | 92.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:18:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1304-RA | 893 | CG1304-RA | 17..799 | 799..17 | 3915 | 100 | Minus |
Ser6-RA | 901 | CG2071-RA | 36..755 | 782..63 | 2165 | 87.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:18:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20964621..20965403 | 17..799 | 3915 | 100 | Plus |
X | 23542271 | X | 20962751..20963470 | 63..782 | 2100 | 86.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:18:44 has no hits.
BS11584.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:13:44 Download gff for
BS11584.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1304-PA | 1..783 | 17..799 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:46:10 Download gff for
BS11584.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1304-PA | 1..783 | 17..799 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:02:49 Download gff for
BS11584.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1304-RA | 17..803 | 12..799 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:13:57 Download gff for
BS11584.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1304-RA | 17..803 | 12..799 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:13:57 Download gff for
BS11584.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20964617..20965403 | 12..799 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:02:49 Download gff for
BS11584.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20835644..20836430 | 12..799 | 99 | | Plus |
BS11584.5prime Sequence
813 bp (812 high quality bases) assembled on 2006-05-08
> BS11584.5prime
GAAGTTATCAGTCGACATGAGATCCGTTAAGGCAGCGATTTTGCTCGGTA
GCTTTTTGCTGCTGTTGGCAGTGCCCGTACATTCGGCACCTGGTAGCCTC
AACGGTCGAGTGGTGGGCGGTGAGGATGCCGTGAAAAATCAGTTTCCCCA
CCAGGTGTCCCTGAGGAACGCCGGCTCCCACAGCTGTGGAGGTTCGATTC
TGTCCAGGAACTACGTCTTAACCGCTGCCCATTGTGTAACCAATCAGGAC
TCAAATGGCAATTCCGTTCCAATTGCTGCGGAGCGTTTCACCATTCGAGC
GGGCTCCAACGATCGATTCAGCGGTGGAGTCCTTGTCCAGGTGGCCGAGG
TAATTGTCCACGAGGAGTATGGTAACTTCCTTAACGACGTTGCTCTGCTG
CGACTAGAGAGCCCACTGATCCTGTCCGCGAGTATTCAGCCCATCGATCT
ACCCACTGCGGATACTCCAGCGGATGTGGACGTCATCATTTCCGGCTGGG
GAAGGATCAAACACCAGGGAGACTTGCCACGCTATCTGCAGTACAACACC
CTGAAGTCCATTTCCTTGGAGAGGTGCGACGAACTGATCGGCTGGGGAGT
CCAGAGCGAGTTGTGCCTCATCCACGAGGCCGATAATGGAGCGTGCAATG
GGGACTCCGGTGGTCCGGCCGTATATAACAACCAAGTGGTGGGCGTGGCC
GGGTTCGTGTGGTCCGCCTGTGGAACGAGCTATCCAGATGGATATGCCAG
GGTGTACTACCACAACGAATGGATTAAGAATAACTCGGATGTGAAATAAA
AGCTTTCTAGACC
BS11584.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:11:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1304-PA | 783 | CG1304-RA | 1..783 | 17..799 | 3915 | 100 | Plus |
CG2071-PA | 780 | Ser6-RA | 253..542 | 269..558 | 1150 | 95.8 | Plus |
CG2071-PA | 780 | Ser6-RA | 85..221 | 101..237 | 460 | 93.4 | Plus |
CG2071-PA | 780 | Ser6-RA | 628..692 | 644..708 | 200 | 92.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:53:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1304-RA | 893 | CG1304-RA | 17..799 | 17..799 | 3915 | 100 | Plus |
Ser6-RA | 901 | CG2071-RA | 36..755 | 34..753 | 2165 | 87.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:53:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20964621..20965403 | 799..17 | 3915 | 100 | Minus |
X | 23542271 | X | 20962751..20963470 | 753..34 | 2100 | 86.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:53:07 has no hits.
BS11584.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:13:45 Download gff for
BS11584.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1304-PA | 1..783 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:46:12 Download gff for
BS11584.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1304-PA | 1..783 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:07:27 Download gff for
BS11584.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1304-RA | 17..803 | 17..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:54:33 Download gff for
BS11584.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1304-RA | 17..803 | 17..804 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:54:33 Download gff for
BS11584.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20964617..20965403 | 17..804 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:07:27 Download gff for
BS11584.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20835644..20836430 | 17..804 | 99 | | Minus |
BS11584.complete Sequence
815 bp assembled on 2006-11-01
GenBank Submission: FJ636908
> BS11584.complete
GAAGTTATCAGTCGACATGAGATCCGTTAAGGCAGCGATTTTGCTCGGTA
GCTTTTTGCTGCTGTTGGCAGTGCCCGTACATTCGGCACCTGGTAGCCTC
AACGGTCGAGTGGTGGGCGGTGAGGATGCCGTGAAAAATCAGTTTCCCCA
CCAGGTGTCCCTGAGGAACGCCGGCTCCCACAGCTGTGGAGGTTCGATTC
TGTCCAGGAACTACGTCTTAACCGCTGCCCATTGTGTAACCAATCAGGAC
TCAAATGGCAATTCCGTTCCAATTGCTGCGGAGCGTTTCACCATTCGAGC
GGGCTCCAACGATCGATTCAGCGGTGGAGTCCTTGTCCAGGTGGCCGAGG
TAATTGTCCACGAGGAGTATGGTAACTTCCTTAACGACGTTGCTCTGCTG
CGACTAGAGAGCCCACTGATCCTGTCCGCGAGTATTCAGCCCATCGATCT
ACCCACTGCGGATACTCCAGCGGATGTGGACGTCATCATTTCCGGCTGGG
GAAGGATCAAACACCAGGGAGACTTGCCACGCTATCTGCAGTACAACACC
CTGAAGTCCATTTCCTTGGAGAGGTGCGACGAACTGATCGGCTGGGGAGT
CCAGAGCGAGTTGTGCCTCATCCACGAGGCCGATAATGGAGCGTGCAATG
GGGACTCCGGTGGTCCGGCCGTATATAACAACCAAGTGGTGGGCGTGGCC
GGGTTCGTGTGGTCCGCCTGTGGAACGAGCTATCCAGATGGATATGCCAG
GGTGTACTACCACAACGAATGGATTAAGAATAACTCGGATGTGAAATAAA
AGCTTTCTAGACCAT
BS11584.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:42:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1304-RA | 783 | CG1304-PA | 1..783 | 17..799 | 3915 | 100 | Plus |
Ser6-RA | 780 | CG2071-PA | 18..737 | 34..753 | 2100 | 86.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:42:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1304-RA | 893 | CG1304-RA | 17..799 | 17..799 | 3915 | 100 | Plus |
Ser6-RA | 901 | CG2071-RA | 36..755 | 34..753 | 2100 | 86.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:42:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20964621..20965403 | 799..17 | 3915 | 100 | Minus |
X | 23542271 | X | 20962751..20963470 | 753..34 | 2100 | 86.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:42:04 has no hits.
BS11584.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:51 Download gff for
BS11584.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1304-RA | 1..783 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:48 Download gff for
BS11584.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1304-RA | 14..800 | 17..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:59 Download gff for
BS11584.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1304-RA | 17..797 | 17..797 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:51 Download gff for
BS11584.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1304-RA | 14..800 | 17..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:43 Download gff for
BS11584.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1304-RA | 17..797 | 17..797 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:43 Download gff for
BS11584.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20964623..20965403 | 17..797 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:59 Download gff for
BS11584.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20835650..20836430 | 17..797 | 100 | | Minus |
BS11584.pep Sequence
Translation from 16 to 798
> BS11584.pep
MRSVKAAILLGSFLLLLAVPVHSAPGSLNGRVVGGEDAVKNQFPHQVSLR
NAGSHSCGGSILSRNYVLTAAHCVTNQDSNGNSVPIAAERFTIRAGSNDR
FSGGVLVQVAEVIVHEEYGNFLNDVALLRLESPLILSASIQPIDLPTADT
PADVDVIISGWGRIKHQGDLPRYLQYNTLKSISLERCDELIGWGVQSELC
LIHEADNGACNGDSGGPAVYNNQVVGVAGFVWSACGTSYPDGYARVYYHN
EWIKNNSDVK*
BS11584.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1304-PA | 260 | CG1304-PA | 1..260 | 1..260 | 1364 | 100 | Plus |
Ser6-PA | 259 | CG2071-PA | 5..259 | 5..259 | 1127 | 82.7 | Plus |
CG9676-PA | 251 | CG9676-PA | 7..251 | 12..259 | 504 | 45.6 | Plus |
CG32523-PA | 262 | CG32523-PA | 24..256 | 19..253 | 443 | 43.3 | Plus |
CG4653-PA | 254 | CG4653-PA | 37..253 | 44..257 | 433 | 40.9 | Plus |