Clone Sequence Records
BS11585.3prime Sequence
873 bp (745 high quality bases) assembled on 2006-05-08
> BS11585.3prime
ATGGTCTAGAAAGCTTCTAGAGCAAGAAGTCTTCATCGTATTGAACCATC
TCGCGGTGGTCCTTGTGGCTACCCTTTTGTGATTTGCTGGCGGCAATAGA
TGACCAGACTGCCGACGAGGAGGCATCGTTAATGGGCTCAATCTGGGGCT
GGCGTCTAGCCAACTGCACCTGCAAGTTGATGCCATTCACATTCTTGCCA
TGAATCTCCGCAATGGCGCGATCTGCCGACTCGGGTTTGGCGAAGGAAAC
AAAGCCGCGACTCTTTTCGATCTCCATGGAGACATTGACAATGGTGCCGT
AGTCGTTGAATGTCTTTTTTAAGAAATCCTCGGTGACCTTGTTGCCGGAC
ACGAAGATGGTATTGCCGGCCCGTGGCTTCTCTGGCTGCGCTGTGTCCAT
GGGCACCTTCTCGGGCATGCCGCGCTCCTCTCGATCCCGCTCGGTGGCGA
AGTGTTGGTAGAGATTCTGTCGACGCGGCTCCTCCTTAATGATCTCACTA
ATGATCGTCTCCTGGGCCACGTCGTTCTGCGTAGACGAAAAGGGCTGGTA
GGAGGCAACAGTGGTTTCCGAGGTGGAGCGCTTGGCTCTTTCCTGTCCTT
TGGGCCGCTTGAAGGAGGTTTGATCTTGCTTGGTCTGCTTCTGGATGGCG
GGAATGGCGCCGCTTTTGATTAGTTTCCTGGCCACTTCACGGGCATCTCG
CGCATCCGTGGGACGCTTCAAGGTCAAGGAGCTCTCCGGCTCCGGCTTGG
GCGCCTTGTGCGCTTGCAGTGCCTTTTTCTTTTTCTTGAGTTTCTGATAC
TTGGCCTGCAGCATTTGCTCCTCTTCGGTTAAATGTTTGGGGAAGTGTAT
GTAAAACATGTCGACTGATAACT
BS11585.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:11:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5994-PA | 843 | Nelf-E-RA | 5..843 | 855..17 | 4145 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:31:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nelf-E-RA | 1227 | CG5994-RA | 135..980 | 861..16 | 4185 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:31:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8600087..8600606 | 261..780 | 2600 | 100 | Plus |
3L | 28110227 | 3L | 8599831..8599999 | 94..262 | 845 | 100 | Plus |
3L | 28110227 | 3L | 8599689..8599767 | 16..94 | 395 | 100 | Plus |
3L | 28110227 | 3L | 8600663..8600745 | 779..861 | 370 | 96.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:31:25 has no hits.
BS11585.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:13:46 Download gff for
BS11585.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5994-PA | 1..843 | 17..859 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:46:14 Download gff for
BS11585.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5994-PA | 1..843 | 17..859 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:19:05 Download gff for
BS11585.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nelf-E-RA | 130..982 | 13..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:55 Download gff for
BS11585.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nelf-E-RA | 130..982 | 13..868 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:55 Download gff for
BS11585.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8599687..8599766 | 13..93 | 98 | <- | Plus |
3L | 8599831..8599997 | 94..260 | 100 | <- | Plus |
3L | 8600087..8600604 | 261..778 | 100 | <- | Plus |
3L | 8600663..8600750 | 779..868 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:19:05 Download gff for
BS11585.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8592787..8592866 | 13..93 | 98 | <- | Plus |
arm_3L | 8592931..8593097 | 94..260 | 100 | <- | Plus |
arm_3L | 8593187..8593704 | 261..778 | 100 | <- | Plus |
arm_3L | 8593763..8593850 | 779..868 | 92 | | Plus |
BS11585.5prime Sequence
873 bp (858 high quality bases) assembled on 2006-05-08
> BS11585.5prime
GAAGTTATCAGTCGACATGGTTTACATACACTTCCCCAACAATTTAACCG
AAGAGGAGCAAATGCTGCAGGCCAAGTATCAGAAACTCAAGAAAAAGAAA
AAGGCACTGCAAGCGCACAAGGCGCCCAAGCCGGAGCCGGAGAGCTCCTT
GACCTTGAAGCGTCCCACGGATGCGCGAGATGCCCGTGAAGTGGCCAGGA
AACTAATCAAAAGCGGCGCCATTCCCGCCATCCAGAAGCAGACCAAGCAA
GATCAAACCTCCTTCAAGCGGCCCAAAGGACAGGAAAGAGCCAAGCGCTC
CACCTCGGAAACCACTGTTGCCTCCTACCAGCCCTTTTCGTCTACGCAGA
ACGACGTGGCCCAGGAGACGATCATTAGTGAGATCATTAAGGAGGAGCCG
CGTCGACAGAATCTCTACCAACACTTCGCCACCGAGCGGGATCGAGAGGA
GCGCGGCATGCCCGAGAAGGTGCCCATGGACACAGCGCAGCCAGAGAAGC
CACGGGCCGGCAATACCATCTTCGTGTCCGGCAACAAGGTCACCGAGGAT
TTCTTAAAAAAGACATTCAACGACTACGGCACCATTGTCAATGTCTCCAT
GGAGATCGAAAAGAGTCGCGGCTTTGTTTCCTTCGCCAAACCCGAGTCGG
CAGATCGCGCCATTGCGGAGATTCATGGCAAGAATGTGAATGGCATCAAC
TTGCAGGTGCAGTTGGCTAGACGCCAGCCCCAGATTGAGCCCATTAACGA
TGCCTCCTCGTCGGCAGTCTGGTCATCTATTGCCGCCAGCAAATCACAAA
AGGGTAGCCACAAGGACCACCGCGAGATGGTTCAATACGATGAAGACTTC
TTGCTCTAGAAGCTTTCTAGACC
BS11585.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5994-PA | 843 | Nelf-E-RA | 1..843 | 17..859 | 4215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:12:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nelf-E-RA | 1227 | CG5994-RA | 135..980 | 15..860 | 4230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:12:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8600087..8600606 | 615..96 | 2600 | 100 | Minus |
3L | 28110227 | 3L | 8599831..8599999 | 782..614 | 845 | 100 | Minus |
3L | 28110227 | 3L | 8600663..8600745 | 97..15 | 415 | 100 | Minus |
3L | 28110227 | 3L | 8599689..8599767 | 860..782 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 10:12:41 has no hits.
BS11585.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:13:47 Download gff for
BS11585.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5994-PA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:46:16 Download gff for
BS11585.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5994-PA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:56:04 Download gff for
BS11585.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nelf-E-RA | 130..982 | 8..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:20:58 Download gff for
BS11585.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nelf-E-RA | 130..982 | 8..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:20:58 Download gff for
BS11585.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8599687..8599766 | 783..863 | 98 | <- | Minus |
3L | 8599831..8599997 | 616..782 | 100 | <- | Minus |
3L | 8600087..8600604 | 98..615 | 100 | <- | Minus |
3L | 8600663..8600750 | 8..97 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:56:04 Download gff for
BS11585.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8592787..8592866 | 783..863 | 98 | <- | Minus |
arm_3L | 8592931..8593097 | 616..782 | 100 | <- | Minus |
arm_3L | 8593187..8593704 | 98..615 | 100 | <- | Minus |
arm_3L | 8593763..8593850 | 8..97 | 95 | | Minus |
BS11585.complete Sequence
875 bp assembled on 2006-11-01
GenBank Submission: FJ636909
> BS11585.complete
GAAGTTATCAGTCGACATGGTTTACATACACTTCCCCAACAATTTAACCG
AAGAGGAGCAAATGCTGCAGGCCAAGTATCAGAAACTCAAGAAAAAGAAA
AAGGCACTGCAAGCGCACAAGGCGCCCAAGCCGGAGCCGGAGAGCTCCTT
GACCTTGAAGCGTCCCACGGATGCGCGAGATGCCCGTGAAGTGGCCAGGA
AACTAATCAAAAGCGGCGCCATTCCCGCCATCCAGAAGCAGACCAAGCAA
GATCAAACCTCCTTCAAGCGGCCCAAAGGACAGGAAAGAGCCAAGCGCTC
CACCTCGGAAACCACTGTTGCCTCCTACCAGCCCTTTTCGTCTACGCAGA
ACGACGTGGCCCAGGAGACGATCATTAGTGAGATCATTAAGGAGGAGCCG
CGTCGACAGAATCTCTACCAACACTTCGCCACCGAGCGGGATCGAGAGGA
GCGCGGCATGCCCGAGAAGGTGCCCATGGACACAGCGCAGCCAGAGAAGC
CACGGGCCGGCAATACCATCTTCGTGTCCGGCAACAAGGTCACCGAGGAT
TTCTTAAAAAAGACATTCAACGACTACGGCACCATTGTCAATGTCTCCAT
GGAGATCGAAAAGAGTCGCGGCTTTGTTTCCTTCGCCAAACCCGAGTCGG
CAGATCGCGCCATTGCGGAGATTCATGGCAAGAATGTGAATGGCATCAAC
TTGCAGGTGCAGTTGGCTAGACGCCAGCCCCAGATTGAGCCCATTAACGA
TGCCTCCTCGTCGGCAGTCTGGTCATCTATTGCCGCCAGCAAATCACAAA
AGGGTAGCCACAAGGACCACCGCGAGATGGTTCAATACGATGAAGACTTC
TTGCTCTAGAAGCTTTCTAGACCAT
BS11585.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:45:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nelf-E-RA | 843 | CG5994-PA | 1..843 | 17..859 | 4215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:45:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nelf-E-RA | 1227 | CG5994-RA | 135..980 | 15..860 | 4230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:45:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8600087..8600606 | 615..96 | 2600 | 100 | Minus |
3L | 28110227 | 3L | 8599831..8599999 | 782..614 | 845 | 100 | Minus |
3L | 28110227 | 3L | 8600663..8600745 | 97..15 | 415 | 100 | Minus |
3L | 28110227 | 3L | 8599689..8599767 | 860..782 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:45:20 has no hits.
BS11585.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:17 Download gff for
BS11585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nelf-E-RA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:10 Download gff for
BS11585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nelf-E-RA | 125..977 | 8..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:10 Download gff for
BS11585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nelf-E-RA | 137..979 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:18 Download gff for
BS11585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nelf-E-RA | 125..977 | 8..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:31:14 Download gff for
BS11585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nelf-E-RA | 137..979 | 17..859 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:31:14 Download gff for
BS11585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8600663..8600743 | 17..97 | 100 | | Minus |
3L | 8599831..8599997 | 616..782 | 100 | <- | Minus |
3L | 8599690..8599766 | 783..859 | 100 | <- | Minus |
3L | 8600087..8600604 | 98..615 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:10 Download gff for
BS11585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8592790..8592866 | 783..859 | 100 | <- | Minus |
arm_3L | 8592931..8593097 | 616..782 | 100 | <- | Minus |
arm_3L | 8593187..8593704 | 98..615 | 100 | <- | Minus |
arm_3L | 8593763..8593843 | 17..97 | 100 | | Minus |
BS11585.pep Sequence
Translation from 16 to 858
> BS11585.pep
MVYIHFPNNLTEEEQMLQAKYQKLKKKKKALQAHKAPKPEPESSLTLKRP
TDARDAREVARKLIKSGAIPAIQKQTKQDQTSFKRPKGQERAKRSTSETT
VASYQPFSSTQNDVAQETIISEIIKEEPRRQNLYQHFATERDREERGMPE
KVPMDTAQPEKPRAGNTIFVSGNKVTEDFLKKTFNDYGTIVNVSMEIEKS
RGFVSFAKPESADRAIAEIHGKNVNGINLQVQLARRQPQIEPINDASSSA
VWSSIAASKSQKGSHKDHREMVQYDEDFLL*
BS11585.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nelf-E-PA | 280 | CG5994-PA | 1..280 | 1..280 | 1422 | 100 | Plus |