Clone BS11585 Report

Search the DGRC for BS11585

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:115
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptNelf-E-RA
Protein status:BS11585.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11585.3prime Sequence

873 bp (745 high quality bases) assembled on 2006-05-08

> BS11585.3prime
ATGGTCTAGAAAGCTTCTAGAGCAAGAAGTCTTCATCGTATTGAACCATC
TCGCGGTGGTCCTTGTGGCTACCCTTTTGTGATTTGCTGGCGGCAATAGA
TGACCAGACTGCCGACGAGGAGGCATCGTTAATGGGCTCAATCTGGGGCT
GGCGTCTAGCCAACTGCACCTGCAAGTTGATGCCATTCACATTCTTGCCA
TGAATCTCCGCAATGGCGCGATCTGCCGACTCGGGTTTGGCGAAGGAAAC
AAAGCCGCGACTCTTTTCGATCTCCATGGAGACATTGACAATGGTGCCGT
AGTCGTTGAATGTCTTTTTTAAGAAATCCTCGGTGACCTTGTTGCCGGAC
ACGAAGATGGTATTGCCGGCCCGTGGCTTCTCTGGCTGCGCTGTGTCCAT
GGGCACCTTCTCGGGCATGCCGCGCTCCTCTCGATCCCGCTCGGTGGCGA
AGTGTTGGTAGAGATTCTGTCGACGCGGCTCCTCCTTAATGATCTCACTA
ATGATCGTCTCCTGGGCCACGTCGTTCTGCGTAGACGAAAAGGGCTGGTA
GGAGGCAACAGTGGTTTCCGAGGTGGAGCGCTTGGCTCTTTCCTGTCCTT
TGGGCCGCTTGAAGGAGGTTTGATCTTGCTTGGTCTGCTTCTGGATGGCG
GGAATGGCGCCGCTTTTGATTAGTTTCCTGGCCACTTCACGGGCATCTCG
CGCATCCGTGGGACGCTTCAAGGTCAAGGAGCTCTCCGGCTCCGGCTTGG
GCGCCTTGTGCGCTTGCAGTGCCTTTTTCTTTTTCTTGAGTTTCTGATAC
TTGGCCTGCAGCATTTGCTCCTCTTCGGTTAAATGTTTGGGGAAGTGTAT
GTAAAACATGTCGACTGATAACT

BS11585.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:11:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG5994-PA 843 Nelf-E-RA 5..843 855..17 4145 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:31:26
Subject Length Description Subject Range Query Range Score Percent Strand
Nelf-E-RA 1227 CG5994-RA 135..980 861..16 4185 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8600087..8600606 261..780 2600 100 Plus
3L 28110227 3L 8599831..8599999 94..262 845 100 Plus
3L 28110227 3L 8599689..8599767 16..94 395 100 Plus
3L 28110227 3L 8600663..8600745 779..861 370 96.4 Plus
Blast to na_te.dros performed on 2015-02-12 10:31:25 has no hits.

BS11585.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:13:46 Download gff for BS11585.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5994-PA 1..843 17..859 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:46:14 Download gff for BS11585.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5994-PA 1..843 17..859 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:19:05 Download gff for BS11585.3prime
Subject Subject Range Query Range Percent Splice Strand
Nelf-E-RA 130..982 13..868 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:55 Download gff for BS11585.3prime
Subject Subject Range Query Range Percent Splice Strand
Nelf-E-RA 130..982 13..868 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:55 Download gff for BS11585.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8599687..8599766 13..93 98 <- Plus
3L 8599831..8599997 94..260 100 <- Plus
3L 8600087..8600604 261..778 100 <- Plus
3L 8600663..8600750 779..868 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:19:05 Download gff for BS11585.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8592787..8592866 13..93 98 <- Plus
arm_3L 8592931..8593097 94..260 100 <- Plus
arm_3L 8593187..8593704 261..778 100 <- Plus
arm_3L 8593763..8593850 779..868 92   Plus

BS11585.5prime Sequence

873 bp (858 high quality bases) assembled on 2006-05-08

> BS11585.5prime
GAAGTTATCAGTCGACATGGTTTACATACACTTCCCCAACAATTTAACCG
AAGAGGAGCAAATGCTGCAGGCCAAGTATCAGAAACTCAAGAAAAAGAAA
AAGGCACTGCAAGCGCACAAGGCGCCCAAGCCGGAGCCGGAGAGCTCCTT
GACCTTGAAGCGTCCCACGGATGCGCGAGATGCCCGTGAAGTGGCCAGGA
AACTAATCAAAAGCGGCGCCATTCCCGCCATCCAGAAGCAGACCAAGCAA
GATCAAACCTCCTTCAAGCGGCCCAAAGGACAGGAAAGAGCCAAGCGCTC
CACCTCGGAAACCACTGTTGCCTCCTACCAGCCCTTTTCGTCTACGCAGA
ACGACGTGGCCCAGGAGACGATCATTAGTGAGATCATTAAGGAGGAGCCG
CGTCGACAGAATCTCTACCAACACTTCGCCACCGAGCGGGATCGAGAGGA
GCGCGGCATGCCCGAGAAGGTGCCCATGGACACAGCGCAGCCAGAGAAGC
CACGGGCCGGCAATACCATCTTCGTGTCCGGCAACAAGGTCACCGAGGAT
TTCTTAAAAAAGACATTCAACGACTACGGCACCATTGTCAATGTCTCCAT
GGAGATCGAAAAGAGTCGCGGCTTTGTTTCCTTCGCCAAACCCGAGTCGG
CAGATCGCGCCATTGCGGAGATTCATGGCAAGAATGTGAATGGCATCAAC
TTGCAGGTGCAGTTGGCTAGACGCCAGCCCCAGATTGAGCCCATTAACGA
TGCCTCCTCGTCGGCAGTCTGGTCATCTATTGCCGCCAGCAAATCACAAA
AGGGTAGCCACAAGGACCACCGCGAGATGGTTCAATACGATGAAGACTTC
TTGCTCTAGAAGCTTTCTAGACC

BS11585.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG5994-PA 843 Nelf-E-RA 1..843 17..859 4215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:12:45
Subject Length Description Subject Range Query Range Score Percent Strand
Nelf-E-RA 1227 CG5994-RA 135..980 15..860 4230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:12:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8600087..8600606 615..96 2600 100 Minus
3L 28110227 3L 8599831..8599999 782..614 845 100 Minus
3L 28110227 3L 8600663..8600745 97..15 415 100 Minus
3L 28110227 3L 8599689..8599767 860..782 395 100 Minus
Blast to na_te.dros performed on 2015-02-02 10:12:41 has no hits.

BS11585.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:13:47 Download gff for BS11585.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5994-PA 1..843 17..859 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:46:16 Download gff for BS11585.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5994-PA 1..843 17..859 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:56:04 Download gff for BS11585.5prime
Subject Subject Range Query Range Percent Splice Strand
Nelf-E-RA 130..982 8..863 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:20:58 Download gff for BS11585.5prime
Subject Subject Range Query Range Percent Splice Strand
Nelf-E-RA 130..982 8..863 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:20:58 Download gff for BS11585.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8599687..8599766 783..863 98 <- Minus
3L 8599831..8599997 616..782 100 <- Minus
3L 8600087..8600604 98..615 100 <- Minus
3L 8600663..8600750 8..97 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:56:04 Download gff for BS11585.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8592787..8592866 783..863 98 <- Minus
arm_3L 8592931..8593097 616..782 100 <- Minus
arm_3L 8593187..8593704 98..615 100 <- Minus
arm_3L 8593763..8593850 8..97 95   Minus

BS11585.complete Sequence

875 bp assembled on 2006-11-01

GenBank Submission: FJ636909

> BS11585.complete
GAAGTTATCAGTCGACATGGTTTACATACACTTCCCCAACAATTTAACCG
AAGAGGAGCAAATGCTGCAGGCCAAGTATCAGAAACTCAAGAAAAAGAAA
AAGGCACTGCAAGCGCACAAGGCGCCCAAGCCGGAGCCGGAGAGCTCCTT
GACCTTGAAGCGTCCCACGGATGCGCGAGATGCCCGTGAAGTGGCCAGGA
AACTAATCAAAAGCGGCGCCATTCCCGCCATCCAGAAGCAGACCAAGCAA
GATCAAACCTCCTTCAAGCGGCCCAAAGGACAGGAAAGAGCCAAGCGCTC
CACCTCGGAAACCACTGTTGCCTCCTACCAGCCCTTTTCGTCTACGCAGA
ACGACGTGGCCCAGGAGACGATCATTAGTGAGATCATTAAGGAGGAGCCG
CGTCGACAGAATCTCTACCAACACTTCGCCACCGAGCGGGATCGAGAGGA
GCGCGGCATGCCCGAGAAGGTGCCCATGGACACAGCGCAGCCAGAGAAGC
CACGGGCCGGCAATACCATCTTCGTGTCCGGCAACAAGGTCACCGAGGAT
TTCTTAAAAAAGACATTCAACGACTACGGCACCATTGTCAATGTCTCCAT
GGAGATCGAAAAGAGTCGCGGCTTTGTTTCCTTCGCCAAACCCGAGTCGG
CAGATCGCGCCATTGCGGAGATTCATGGCAAGAATGTGAATGGCATCAAC
TTGCAGGTGCAGTTGGCTAGACGCCAGCCCCAGATTGAGCCCATTAACGA
TGCCTCCTCGTCGGCAGTCTGGTCATCTATTGCCGCCAGCAAATCACAAA
AGGGTAGCCACAAGGACCACCGCGAGATGGTTCAATACGATGAAGACTTC
TTGCTCTAGAAGCTTTCTAGACCAT

BS11585.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:45:21
Subject Length Description Subject Range Query Range Score Percent Strand
Nelf-E-RA 843 CG5994-PA 1..843 17..859 4215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:45:23
Subject Length Description Subject Range Query Range Score Percent Strand
Nelf-E-RA 1227 CG5994-RA 135..980 15..860 4230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8600087..8600606 615..96 2600 100 Minus
3L 28110227 3L 8599831..8599999 782..614 845 100 Minus
3L 28110227 3L 8600663..8600745 97..15 415 100 Minus
3L 28110227 3L 8599689..8599767 860..782 395 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:45:20 has no hits.

BS11585.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:17 Download gff for BS11585.complete
Subject Subject Range Query Range Percent Splice Strand
Nelf-E-RA 1..843 17..859 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:10 Download gff for BS11585.complete
Subject Subject Range Query Range Percent Splice Strand
Nelf-E-RA 125..977 8..863 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:10 Download gff for BS11585.complete
Subject Subject Range Query Range Percent Splice Strand
Nelf-E-RA 137..979 17..859 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:18 Download gff for BS11585.complete
Subject Subject Range Query Range Percent Splice Strand
Nelf-E-RA 125..977 8..863 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:31:14 Download gff for BS11585.complete
Subject Subject Range Query Range Percent Splice Strand
Nelf-E-RA 137..979 17..859 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:31:14 Download gff for BS11585.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8600663..8600743 17..97 100   Minus
3L 8599831..8599997 616..782 100 <- Minus
3L 8599690..8599766 783..859 100 <- Minus
3L 8600087..8600604 98..615 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:10 Download gff for BS11585.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8592790..8592866 783..859 100 <- Minus
arm_3L 8592931..8593097 616..782 100 <- Minus
arm_3L 8593187..8593704 98..615 100 <- Minus
arm_3L 8593763..8593843 17..97 100   Minus

BS11585.pep Sequence

Translation from 16 to 858

> BS11585.pep
MVYIHFPNNLTEEEQMLQAKYQKLKKKKKALQAHKAPKPEPESSLTLKRP
TDARDAREVARKLIKSGAIPAIQKQTKQDQTSFKRPKGQERAKRSTSETT
VASYQPFSSTQNDVAQETIISEIIKEEPRRQNLYQHFATERDREERGMPE
KVPMDTAQPEKPRAGNTIFVSGNKVTEDFLKKTFNDYGTIVNVSMEIEKS
RGFVSFAKPESADRAIAEIHGKNVNGINLQVQLARRQPQIEPINDASSSA
VWSSIAASKSQKGSHKDHREMVQYDEDFLL*

BS11585.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:17
Subject Length Description Subject Range Query Range Score Percent Strand
Nelf-E-PA 280 CG5994-PA 1..280 1..280 1422 100 Plus