Clone Sequence Records
BS11593.3prime Sequence
405 bp (404 high quality bases) assembled on 2006-05-08
> BS11593.3prime
ATGGTCTAGAAAGCTTTTACAGGGTTTTTGCGCGATCCAGCAGATCGCCA
ATGAACTTCGATATGTCTGATTGCGGGCGTTTGCAGACGGACAGTAATCT
TATAAGATGAGATCTTCTTATGTCATCTGTGTCCATGTCCAGTATCTCGT
CGATGTCCACATCGATGGCCTCGTTTGGTGGATCGAAGAGCTTCTGTAGC
TCGTCGTAGAGCCACATCTCCACGGCCAGCCGCTTGCGGATGAGGCTCAT
CTGGTGTGAACCGTACTTGGCCGTGAGGAACTTCTCCCGCCGCTCCTTCA
CCTCCGCCCCCTTCTCGTTGAAGTTGACCCGGAGGTTCGTCCGGTTCGGC
GACCGCTCACAGTCGTTCATCTGCTCCAGACCGCACTGCATGTCGACTGA
TAACT
BS11593.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17124-PA | 375 | CG17124-RA | 1..375 | 391..17 | 1875 | 100 | Minus |
CG17124-PB | 375 | CG17124-RB | 1..375 | 391..17 | 1875 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:13:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17124-RC | 2989 | CG17124-RC | 1202..1577 | 391..16 | 1880 | 100 | Minus |
CG17124-RB | 2291 | CG17124-RB | 504..879 | 391..16 | 1880 | 100 | Minus |
CG17124-RA | 1251 | CG17124-RA | 504..879 | 391..16 | 1880 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:13:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10745782..10745997 | 176..391 | 1080 | 100 | Plus |
2L | 23513712 | 2L | 10745487..10745571 | 16..100 | 425 | 100 | Plus |
2L | 23513712 | 2L | 10745635..10745722 | 101..188 | 395 | 96.6 | Plus |
Blast to na_te.dros performed on 2015-01-31 12:13:30 has no hits.
BS11593.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:14:01 Download gff for
BS11593.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17124-PB | 1..375 | 17..391 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:46:34 Download gff for
BS11593.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17124-PB | 1..375 | 17..391 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:57:29 Download gff for
BS11593.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17124-RA | 504..879 | 16..391 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:02:45 Download gff for
BS11593.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17124-RA | 504..879 | 16..391 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:02:45 Download gff for
BS11593.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10745487..10745571 | 16..100 | 100 | <- | Plus |
2L | 10745635..10745709 | 101..175 | 100 | <- | Plus |
2L | 10745782..10745997 | 176..391 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:57:29 Download gff for
BS11593.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10745487..10745571 | 16..100 | 100 | <- | Plus |
arm_2L | 10745635..10745709 | 101..175 | 100 | <- | Plus |
arm_2L | 10745782..10745997 | 176..391 | 100 | | Plus |
BS11593.5prime Sequence
405 bp (404 high quality bases) assembled on 2006-05-08
> BS11593.5prime
GAAGTTATCAGTCGACATGCAGTGCGGTCTGGAGCAGATGAACGACTGTG
AGCGGTCGCCGAACCGGACGAACCTCCGGGTCAACTTCAACGAGAAGGGG
GCGGAGGTGAAGGAGCGGCGGGAGAAGTTCCTCACGGCCAAGTACGGTTC
ACACCAGATGAGCCTCATCCGCAAGCGGCTGGCCGTGGAGATGTGGCTCT
ACGACGAGCTACAGAAGCTCTTCGATCCACCAAACGAGGCCATCGATGTG
GACATCGACGAGATACTGGACATGGACACAGATGACATAAGAAGATCTCA
TCTTATAAGATTACTGTCCGTCTGCAAACGCCCGCAATCAGACATATCGA
AGTTCATTGGCGATCTGCTGGATCGCGCAAAAACCCTGTAAAAGCTTTCT
AGACC
BS11593.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17124-PA | 375 | CG17124-RA | 1..375 | 17..391 | 1875 | 100 | Plus |
CG17124-PB | 375 | CG17124-RB | 1..375 | 17..391 | 1875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:22:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17124-RC | 2989 | CG17124-RC | 1202..1577 | 17..392 | 1880 | 100 | Plus |
CG17124-RB | 2291 | CG17124-RB | 504..879 | 17..392 | 1880 | 100 | Plus |
CG17124-RA | 1251 | CG17124-RA | 504..879 | 17..392 | 1880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:22:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10745782..10745997 | 232..17 | 1080 | 100 | Minus |
2L | 23513712 | 2L | 10745487..10745571 | 392..308 | 425 | 100 | Minus |
2L | 23513712 | 2L | 10745635..10745722 | 307..220 | 395 | 96.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:22:12 has no hits.
BS11593.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:14:02 Download gff for
BS11593.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17124-PB | 1..375 | 17..391 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:46:35 Download gff for
BS11593.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17124-PB | 1..375 | 17..391 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:41:30 Download gff for
BS11593.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17124-RA | 504..879 | 17..392 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:56:01 Download gff for
BS11593.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17124-RA | 504..879 | 17..392 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:56:01 Download gff for
BS11593.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10745487..10745571 | 308..392 | 100 | <- | Minus |
2L | 10745635..10745709 | 233..307 | 100 | <- | Minus |
2L | 10745782..10745997 | 17..232 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:41:30 Download gff for
BS11593.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10745487..10745571 | 308..392 | 100 | <- | Minus |
arm_2L | 10745635..10745709 | 233..307 | 100 | <- | Minus |
arm_2L | 10745782..10745997 | 17..232 | 100 | | Minus |
BS11593.complete Sequence
407 bp assembled on 2006-11-01
GenBank Submission: FJ636911
> BS11593.complete
GAAGTTATCAGTCGACATGCAGTGCGGTCTGGAGCAGATGAACGACTGTG
AGCGGTCGCCGAACCGGACGAACCTCCGGGTCAACTTCAACGAGAAGGGG
GCGGAGGTGAAGGAGCGGCGGGAGAAGTTCCTCACGGCCAAGTACGGTTC
ACACCAGATGAGCCTCATCCGCAAGCGGCTGGCCGTGGAGATGTGGCTCT
ACGACGAGCTACAGAAGCTCTTCGATCCACCAAACGAGGCCATCGATGTG
GACATCGACGAGATACTGGACATGGACACAGATGACATAAGAAGATCTCA
TCTTATAAGATTACTGTCCGTCTGCAAACGCCCGCAATCAGACATATCGA
AGTTCATTGGCGATCTGCTGGATCGCGCAAAAACCCTGTAAAAGCTTTCT
AGACCAT
BS11593.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:58:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17124-RC | 375 | CG17124-PC | 1..375 | 17..391 | 1875 | 100 | Plus |
CG17124-RB | 375 | CG17124-PB | 1..375 | 17..391 | 1875 | 100 | Plus |
CG17124-RA | 375 | CG17124-PA | 1..375 | 17..391 | 1875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17124-RC | 2989 | CG17124-RC | 1202..1577 | 17..392 | 1880 | 100 | Plus |
CG17124-RB | 2291 | CG17124-RB | 504..879 | 17..392 | 1880 | 100 | Plus |
CG17124-RA | 1251 | CG17124-RA | 504..879 | 17..392 | 1880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10745782..10745997 | 232..17 | 1080 | 100 | Minus |
2L | 23513712 | 2L | 10745487..10745571 | 392..308 | 425 | 100 | Minus |
2L | 23513712 | 2L | 10745635..10745722 | 307..220 | 395 | 96.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:58:14 has no hits.
BS11593.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:52 Download gff for
BS11593.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17124-RB | 1..375 | 17..391 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:50 Download gff for
BS11593.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17124-RB | 495..870 | 17..392 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:37 Download gff for
BS11593.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17124-RA | 504..876 | 17..389 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:53 Download gff for
BS11593.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17124-RB | 495..870 | 17..392 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:07:10 Download gff for
BS11593.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17124-RA | 504..876 | 17..389 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:07:10 Download gff for
BS11593.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10745490..10745571 | 308..389 | 100 | <- | Minus |
2L | 10745635..10745709 | 233..307 | 100 | <- | Minus |
2L | 10745782..10745997 | 17..232 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:37 Download gff for
BS11593.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10745490..10745571 | 308..389 | 100 | <- | Minus |
arm_2L | 10745635..10745709 | 233..307 | 100 | <- | Minus |
arm_2L | 10745782..10745997 | 17..232 | 100 | | Minus |
BS11593.pep Sequence
Translation from 16 to 390
> BS11593.pep
MQCGLEQMNDCERSPNRTNLRVNFNEKGAEVKERREKFLTAKYGSHQMSL
IRKRLAVEMWLYDELQKLFDPPNEAIDVDIDEILDMDTDDIRRSHLIRLL
SVCKRPQSDISKFIGDLLDRAKTL*
BS11593.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17124-PC | 124 | CG17124-PC | 1..124 | 1..124 | 643 | 100 | Plus |
CG17124-PB | 124 | CG17124-PB | 1..124 | 1..124 | 643 | 100 | Plus |
CG17124-PA | 124 | CG17124-PA | 1..124 | 1..124 | 643 | 100 | Plus |