Clone BS11593 Report

Search the DGRC for BS11593

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:115
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptCG17124-RA
Protein status:BS11593.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11593.3prime Sequence

405 bp (404 high quality bases) assembled on 2006-05-08

> BS11593.3prime
ATGGTCTAGAAAGCTTTTACAGGGTTTTTGCGCGATCCAGCAGATCGCCA
ATGAACTTCGATATGTCTGATTGCGGGCGTTTGCAGACGGACAGTAATCT
TATAAGATGAGATCTTCTTATGTCATCTGTGTCCATGTCCAGTATCTCGT
CGATGTCCACATCGATGGCCTCGTTTGGTGGATCGAAGAGCTTCTGTAGC
TCGTCGTAGAGCCACATCTCCACGGCCAGCCGCTTGCGGATGAGGCTCAT
CTGGTGTGAACCGTACTTGGCCGTGAGGAACTTCTCCCGCCGCTCCTTCA
CCTCCGCCCCCTTCTCGTTGAAGTTGACCCGGAGGTTCGTCCGGTTCGGC
GACCGCTCACAGTCGTTCATCTGCTCCAGACCGCACTGCATGTCGACTGA
TAACT

BS11593.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG17124-PA 375 CG17124-RA 1..375 391..17 1875 100 Minus
CG17124-PB 375 CG17124-RB 1..375 391..17 1875 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:13:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG17124-RC 2989 CG17124-RC 1202..1577 391..16 1880 100 Minus
CG17124-RB 2291 CG17124-RB 504..879 391..16 1880 100 Minus
CG17124-RA 1251 CG17124-RA 504..879 391..16 1880 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:13:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10745782..10745997 176..391 1080 100 Plus
2L 23513712 2L 10745487..10745571 16..100 425 100 Plus
2L 23513712 2L 10745635..10745722 101..188 395 96.6 Plus
Blast to na_te.dros performed on 2015-01-31 12:13:30 has no hits.

BS11593.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:14:01 Download gff for BS11593.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17124-PB 1..375 17..391 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:46:34 Download gff for BS11593.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17124-PB 1..375 17..391 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:57:29 Download gff for BS11593.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17124-RA 504..879 16..391 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:02:45 Download gff for BS11593.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17124-RA 504..879 16..391 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:02:45 Download gff for BS11593.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10745487..10745571 16..100 100 <- Plus
2L 10745635..10745709 101..175 100 <- Plus
2L 10745782..10745997 176..391 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:57:29 Download gff for BS11593.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10745487..10745571 16..100 100 <- Plus
arm_2L 10745635..10745709 101..175 100 <- Plus
arm_2L 10745782..10745997 176..391 100   Plus

BS11593.5prime Sequence

405 bp (404 high quality bases) assembled on 2006-05-08

> BS11593.5prime
GAAGTTATCAGTCGACATGCAGTGCGGTCTGGAGCAGATGAACGACTGTG
AGCGGTCGCCGAACCGGACGAACCTCCGGGTCAACTTCAACGAGAAGGGG
GCGGAGGTGAAGGAGCGGCGGGAGAAGTTCCTCACGGCCAAGTACGGTTC
ACACCAGATGAGCCTCATCCGCAAGCGGCTGGCCGTGGAGATGTGGCTCT
ACGACGAGCTACAGAAGCTCTTCGATCCACCAAACGAGGCCATCGATGTG
GACATCGACGAGATACTGGACATGGACACAGATGACATAAGAAGATCTCA
TCTTATAAGATTACTGTCCGTCTGCAAACGCCCGCAATCAGACATATCGA
AGTTCATTGGCGATCTGCTGGATCGCGCAAAAACCCTGTAAAAGCTTTCT
AGACC

BS11593.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG17124-PA 375 CG17124-RA 1..375 17..391 1875 100 Plus
CG17124-PB 375 CG17124-RB 1..375 17..391 1875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:22:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG17124-RC 2989 CG17124-RC 1202..1577 17..392 1880 100 Plus
CG17124-RB 2291 CG17124-RB 504..879 17..392 1880 100 Plus
CG17124-RA 1251 CG17124-RA 504..879 17..392 1880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:22:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10745782..10745997 232..17 1080 100 Minus
2L 23513712 2L 10745487..10745571 392..308 425 100 Minus
2L 23513712 2L 10745635..10745722 307..220 395 96.6 Minus
Blast to na_te.dros performed on 2015-02-11 23:22:12 has no hits.

BS11593.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:14:02 Download gff for BS11593.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17124-PB 1..375 17..391 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:46:35 Download gff for BS11593.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17124-PB 1..375 17..391 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:41:30 Download gff for BS11593.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17124-RA 504..879 17..392 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:56:01 Download gff for BS11593.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17124-RA 504..879 17..392 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:56:01 Download gff for BS11593.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10745487..10745571 308..392 100 <- Minus
2L 10745635..10745709 233..307 100 <- Minus
2L 10745782..10745997 17..232 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:41:30 Download gff for BS11593.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10745487..10745571 308..392 100 <- Minus
arm_2L 10745635..10745709 233..307 100 <- Minus
arm_2L 10745782..10745997 17..232 100   Minus

BS11593.complete Sequence

407 bp assembled on 2006-11-01

GenBank Submission: FJ636911

> BS11593.complete
GAAGTTATCAGTCGACATGCAGTGCGGTCTGGAGCAGATGAACGACTGTG
AGCGGTCGCCGAACCGGACGAACCTCCGGGTCAACTTCAACGAGAAGGGG
GCGGAGGTGAAGGAGCGGCGGGAGAAGTTCCTCACGGCCAAGTACGGTTC
ACACCAGATGAGCCTCATCCGCAAGCGGCTGGCCGTGGAGATGTGGCTCT
ACGACGAGCTACAGAAGCTCTTCGATCCACCAAACGAGGCCATCGATGTG
GACATCGACGAGATACTGGACATGGACACAGATGACATAAGAAGATCTCA
TCTTATAAGATTACTGTCCGTCTGCAAACGCCCGCAATCAGACATATCGA
AGTTCATTGGCGATCTGCTGGATCGCGCAAAAACCCTGTAAAAGCTTTCT
AGACCAT

BS11593.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG17124-RC 375 CG17124-PC 1..375 17..391 1875 100 Plus
CG17124-RB 375 CG17124-PB 1..375 17..391 1875 100 Plus
CG17124-RA 375 CG17124-PA 1..375 17..391 1875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG17124-RC 2989 CG17124-RC 1202..1577 17..392 1880 100 Plus
CG17124-RB 2291 CG17124-RB 504..879 17..392 1880 100 Plus
CG17124-RA 1251 CG17124-RA 504..879 17..392 1880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10745782..10745997 232..17 1080 100 Minus
2L 23513712 2L 10745487..10745571 392..308 425 100 Minus
2L 23513712 2L 10745635..10745722 307..220 395 96.6 Minus
Blast to na_te.dros performed on 2014-11-27 15:58:14 has no hits.

BS11593.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:52 Download gff for BS11593.complete
Subject Subject Range Query Range Percent Splice Strand
CG17124-RB 1..375 17..391 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:50 Download gff for BS11593.complete
Subject Subject Range Query Range Percent Splice Strand
CG17124-RB 495..870 17..392 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:37 Download gff for BS11593.complete
Subject Subject Range Query Range Percent Splice Strand
CG17124-RA 504..876 17..389 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:53 Download gff for BS11593.complete
Subject Subject Range Query Range Percent Splice Strand
CG17124-RB 495..870 17..392 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:07:10 Download gff for BS11593.complete
Subject Subject Range Query Range Percent Splice Strand
CG17124-RA 504..876 17..389 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:07:10 Download gff for BS11593.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10745490..10745571 308..389 100 <- Minus
2L 10745635..10745709 233..307 100 <- Minus
2L 10745782..10745997 17..232 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:37 Download gff for BS11593.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10745490..10745571 308..389 100 <- Minus
arm_2L 10745635..10745709 233..307 100 <- Minus
arm_2L 10745782..10745997 17..232 100   Minus

BS11593.pep Sequence

Translation from 16 to 390

> BS11593.pep
MQCGLEQMNDCERSPNRTNLRVNFNEKGAEVKERREKFLTAKYGSHQMSL
IRKRLAVEMWLYDELQKLFDPPNEAIDVDIDEILDMDTDDIRRSHLIRLL
SVCKRPQSDISKFIGDLLDRAKTL*

BS11593.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG17124-PC 124 CG17124-PC 1..124 1..124 643 100 Plus
CG17124-PB 124 CG17124-PB 1..124 1..124 643 100 Plus
CG17124-PA 124 CG17124-PA 1..124 1..124 643 100 Plus