Clone BS11594 Report

Search the DGRC for BS11594

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:115
Well:94
Vector:pDNR-Dual
Associated Gene/Transcriptbeat-IIIc-RA
Protein status:BS11594.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11594.3prime Sequence

890 bp (819 high quality bases) assembled on 2006-05-08

> BS11594.3prime
ATGGTCTAGAAAGCTTCTACCGTGCAGTCAATGCAATTTTCTCCAGCTGC
GTTGCGGATTTTCCGTGACTCGTCCTGCGATTTTCCTCCTTGCGGCCAGC
CAGCAACTCTCTCGCCTGCTGAGTTTCTTTCGTTATCCCAATCCCTCCAG
GCGCTGTCCGATCCATGGATATTTTATCTGTATCTATATCTCTCGTGATT
CCCTGCGCCAGGGTTGCCATCACCATCACCGCCAGCGCCACCGGAAGGAG
GACGAGTGGCGTGATTGGTGTGGAGGGCGCTGAAGCCGTGGAACTGGCTG
CATTTGGTTGGACGAACAAGAGCGATAAGATTTTGGTCACAAATAATTCC
CGGTAAGACGTACCTTGGACGGGATCGGCGCGTGAGTTGCTGGCGTAGAC
CGTTTCCCGGGACTCGAGCACCGGCGCCTTCTGCGGCCGGTCGCCCTCCA
CGGACTCCTCGTTGCACCTCCAGTACACGGTCGACAATTCGGCTATGCAC
TTTAGTTTCATGTTGCCTTTGCGAAAGTGTTTCTGTTCCACCCGGAATTG
AAGGCCCAGCACAGAAGTTTCTAGACCATCTCGTCCCGATACAATTGTGT
CGTATTTGCGGAGTTTCTGCTGCTCAACTGGCTCTCCATTCACTTGCCAG
GATAGTTTCACAGCAGGCTTGGAACGTCCTGCGGTGCAATTAACCCGAAC
ATAGTCTCCGATTTGGTAACGCGGTCGTCCACCGCTGATTTTCGGTGATC
CTTCGTCCGGAAGATACGCAACAATCATGTCGCCGTGCTCGGTGACCGTT
TGGAAGGAGGGTGCCTCACCAGAAACTTCGCACCGGAAGCGGCCCGCCGA
CTGCAGATTGACGTTGCGCAGCGTAACAATCGCGTCGCTC

BS11594.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG15138-PA 1152 beat-IIIc-RA 279..1152 890..17 4370 100 Minus
CG15138-PB 1086 beat-IIIc-RB 279..805 890..364 2635 100 Minus
CG15138-PB 1086 beat-IIIc-RB 804..1086 299..17 1415 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
beat-IIIc-RA 1709 CG15138-RA 716..1589 890..17 4370 100 Minus
beat-IIIc-RB 3836 CG15138-RB 716..1242 890..364 2635 100 Minus
beat-IIIc-RB 3836 CG15138-RB 1241..1523 299..17 1415 100 Minus
beat-IIIb-RD 3249 CG33179-RD 1759..1878 517..398 195 77.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:38:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17189950..17190434 17..501 2425 100 Plus
2L 23513712 2L 17190834..17191099 500..765 1330 100 Plus
2L 23513712 2L 17193525..17193649 766..890 625 100 Plus
Blast to na_te.dros performed on 2015-02-12 12:39:02 has no hits.

BS11594.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:14:04 Download gff for BS11594.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15138-PA 279..1152 17..890 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:46:37 Download gff for BS11594.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15138-PA 279..1152 17..890 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:17:32 Download gff for BS11594.3prime
Subject Subject Range Query Range Percent Splice Strand
beat-IIIc-RA 716..1599 6..890 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:15:05 Download gff for BS11594.3prime
Subject Subject Range Query Range Percent Splice Strand
beat-IIIc-RA 716..1599 6..890 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:15:05 Download gff for BS11594.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 17189940..17190432 6..499 98 <- Plus
2L 17190834..17191099 500..765 100 <- Plus
2L 17193525..17193649 766..890 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:17:32 Download gff for BS11594.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17193525..17193649 766..890 100   Plus
arm_2L 17189940..17190432 6..499 98 <- Plus
arm_2L 17190834..17191099 500..765 100 <- Plus

BS11594.5prime Sequence

912 bp (752 high quality bases) assembled on 2006-05-08

> BS11594.5prime
GAAGTTATCAGTCGACATGTTTGGCCATCTCAGTTTGCTGGCCGCTCTGT
TTTTCATCGGCACATTGAAAGATTTCCGCGTTGCTGGGCTGAGACTGACC
GAGGTTCGCATTCCGATGTACGTGATTAAGGGTACCGCGGCGCAGTTGGA
GTGTCTTTACGATCTGGATGGCGAGGCCCTCTACTCCGTGAAATGGTACA
AGGATGGCAACGAGTTCTACCGCTATGTGCCGAGGGATATGCCGCCTGCC
CAAACGTTCCTGCTGCCTGGTGTTAACGTCGATTTACACAACTCGAGCGA
CGCGATTGTTACGCTGCGCAACGTCAATCTGCAGTCGGCGGGCCGCTTCC
GGTGCGAAGTTTCTGGTGAGGCACCCTCCTTCCAAACGGTCACCGAGCAC
GGCGACATGATTGTTGCGTATCTTCCGGACGAAGGATCACCGAAAATCAG
CGGTGGACGACCGCGTTACCAAATCGGAGACTATGTTCGGGTTAATTGCA
CCGCAGGACGTTCCAAGCCTGCTGTGAAACTATCCTGGCAAGTGAATGGA
GAGCCAGTTGAGCAGCAGAAACTCCGCAAATACGACACAATTGTATCGGG
ACGAGATGGTCTAGAAACTTCTGTGCTGGGCCTTCAATTCCGGGTGGAAC
AGAAACACTTTCGCAAAGGCAACATGAAACTAAAGTGCATAGCCGAATTG
TCGACCGTGTACTGGAGGTGCAACGAGGAGTCCGTGGAGGGCGACCGGCC
GCAGAAGGCGCCGGTGCTCGAGTCCCGGGAAACGGTCTACGCCAGCAACT
CACGCGCCGATCCCGTCCAAGGTACGTCTTACCGGGAATTATTTGTGACC
AAAATCTTATCGCTCTTGTTCGTCCAACCAAATGCAGCCAGTTCCACGGC
TTCAGCGCCCTC

BS11594.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG15138-PA 1152 beat-IIIc-RA 1..896 17..912 4455 99.8 Plus
CG15138-PB 1086 beat-IIIc-RB 1..805 17..821 4000 99.8 Plus
CG15138-PB 1086 beat-IIIc-RB 804..830 886..912 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:22:33
Subject Length Description Subject Range Query Range Score Percent Strand
beat-IIIc-RA 1709 CG15138-RA 436..1333 15..912 4475 99.9 Plus
beat-IIIc-RB 3836 CG15138-RB 436..1242 15..821 4020 99.9 Plus
beat-IIIb-RD 3249 CG33179-RD 1254..1510 160..416 310 74.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:22:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17190834..17191099 685..420 1330 100 Minus
2L 23513712 2L 17190206..17190434 912..684 1145 100 Minus
2L 23513712 2L 17196875..17197088 283..70 1070 100 Minus
2L 23513712 2L 17193525..17193660 419..284 680 100 Minus
2L 23513712 2L 17251509..17251565 71..15 270 98.2 Minus
2L 23513712 2L 16984695..16984781 160..246 240 85.1 Plus
Blast to na_te.dros performed on 2015-02-13 02:22:30 has no hits.

BS11594.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:14:05 Download gff for BS11594.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15138-PA 1..896 17..912 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:46:38 Download gff for BS11594.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15138-PA 1..896 17..912 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:10:36 Download gff for BS11594.5prime
Subject Subject Range Query Range Percent Splice Strand
beat-IIIc-RA 430..1333 9..912 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:22:11 Download gff for BS11594.5prime
Subject Subject Range Query Range Percent Splice Strand
beat-IIIc-RA 430..1333 9..912 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:22:11 Download gff for BS11594.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 17190834..17191099 420..685 100 <- Minus
2L 17193525..17193660 284..419 100 <- Minus
2L 17196875..17197086 72..283 100 <- Minus
2L 17251509..17251571 9..71 95   Minus
2L 17190206..17190432 686..912 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:10:36 Download gff for BS11594.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17190206..17190432 686..912 100 <- Minus
arm_2L 17190834..17191099 420..685 100 <- Minus
arm_2L 17193525..17193660 284..419 100 <- Minus
arm_2L 17196875..17197086 72..283 100 <- Minus
arm_2L 17251509..17251571 9..71 95   Minus

BS11594.complete Sequence

1184 bp assembled on 2006-11-01

GenBank Submission: FJ636912

> BS11594.complete
GAAGTTATCAGTCGACATGTTTGGCCATCTCAGTTTGCTGGCCGCTCTGT
TTTTCATCGGCACATTGAAAGATTTCCGCGTTGCTGGGCTGAGACTGACC
GAGGTTCGCATTCCGATGTACGTGATTAAGGGTACCGCGGCGCAGTTGGA
GTGTCTTTACGATCTGGATGGCGAGGCCCTCTACTCCGTGAAATGGTACA
AGGATGGCAACGAGTTCTACCGCTATGTGCCGAGGGATATGCCGCCTGCC
CAAACGTTCCTGCTGCCTGGTGTTAACGTCGATTTACACAACTCGAGCGA
CGCGATTGTTACGCTGCGCAACGTCAATCTGCAGTCGGCGGGCCGCTTCC
GGTGCGAAGTTTCTGGTGAGGCACCCTCCTTCCAAACGGTCACCGAGCAC
GGCGACATGATTGTTGCGTATCTTCCGGACGAAGGATCACCGAAAATCAG
CGGTGGACGACCGCGTTACCAAATCGGAGACTATGTTCGGGTTAATTGCA
CCGCAGGACGTTCCAAGCCTGCTGTGAAACTATCCTGGCAAGTGAATGGA
GAGCCAGTTGAGCAGCAGAAACTCCGCAAATACGACACAATTGTATCGGG
ACGAGATGGTCTAGAAACTTCTGTGCTGGGCCTTCAATTCCGGGTGGAAC
AGAAACACTTTCGCAAAGGCAACATGAAACTAAAGTGCATAGCCGAATTG
TCGACCGTGTACTGGAGGTGCAACGAGGAGTCCGTGGAGGGCGACCGGCC
GCAGAAGGCGCCGGTGCTCGAGTCCCGGGAAACGGTCTACGCCAGCAACT
CACGCGCCGATCCCGTCCAAGGTACGTCTTACCGGGAATTATTTGTGACC
AAAATCTTATCGCTCTTGTTCGTCCAACCAAATGCAGCCAGTTCCACGGC
TTCAGCGCCCTCCACACCAATCACGCCACTCGTCCTCCTTCCGGTGGCGC
TGGCGGTGATGGTGATGGCAACCCTGGCGCAGGGAATCACGAGAGATATA
GATACAGATAAAATATCCATGGATCGGACAGCGCCTGGAGGGATTGGGAT
AACGAAAGAAACTCAGCAGGCGAGAGAGTTGCTGGCTGGCCGCAAGGAGG
AAAATCGCAGGACGAGTCACGGAAAATCCGCAACGCAGCTGGAGAAAATT
GCATTGACTGCACGGTAGAAGCTTTCTAGACCAT

BS11594.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
beat-IIIc-RA 1152 CG15138-PA 1..1152 17..1168 5745 99.9 Plus
beat-IIIc-RB 1086 CG15138-PB 1..805 17..821 4010 99.9 Plus
beat-IIIc-RB 1086 CG15138-PB 804..1086 886..1168 1415 100 Plus
beat-IIIb-RD 1215 CG33179-PD 162..418 160..416 310 74.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:06:15
Subject Length Description Subject Range Query Range Score Percent Strand
beat-IIIc-RA 1709 CG15138-RA 436..1589 15..1168 5755 99.9 Plus
beat-IIIc-RB 3836 CG15138-RB 436..1242 15..821 4020 99.9 Plus
beat-IIIc-RB 3836 CG15138-RB 1241..1523 886..1168 1415 100 Plus
beat-IIIb-RD 3249 CG33179-RD 1254..1510 160..416 310 74.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17189950..17190434 1168..684 2425 100 Minus
2L 23513712 2L 17190834..17191099 685..420 1330 100 Minus
2L 23513712 2L 17196875..17197088 283..70 1070 100 Minus
2L 23513712 2L 17193525..17193660 419..284 680 100 Minus
2L 23513712 2L 17251509..17251565 71..15 270 98.2 Minus
2L 23513712 2L 16984695..16984781 160..246 240 85.1 Plus
Blast to na_te.dros performed on 2014-11-28 05:06:12 has no hits.

BS11594.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:58 Download gff for BS11594.complete
Subject Subject Range Query Range Percent Splice Strand
beat-IIIc-RA 1..1152 17..1168 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:40:56 Download gff for BS11594.complete
Subject Subject Range Query Range Percent Splice Strand
beat-IIIc-RA 442..1587 23..1168 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:13 Download gff for BS11594.complete
Subject Subject Range Query Range Percent Splice Strand
beat-IIIc-RA 444..1589 23..1168 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:58 Download gff for BS11594.complete
Subject Subject Range Query Range Percent Splice Strand
beat-IIIc-RA 428..1597 9..1179 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:04:16 Download gff for BS11594.complete
Subject Subject Range Query Range Percent Splice Strand
beat-IIIc-RA 444..1589 23..1168 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:04:16 Download gff for BS11594.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17189950..17190432 686..1168 100 <- Minus
2L 17190834..17191099 420..685 100 <- Minus
2L 17193525..17193660 284..419 100 <- Minus
2L 17196875..17197086 72..283 100 <- Minus
2L 17251509..17251557 23..71 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:13 Download gff for BS11594.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17196875..17197086 72..283 100 <- Minus
arm_2L 17251509..17251557 23..71 97   Minus
arm_2L 17189950..17190432 686..1168 100 <- Minus
arm_2L 17190834..17191099 420..685 100 <- Minus
arm_2L 17193525..17193660 284..419 100 <- Minus

BS11594.pep Sequence

Translation from 16 to 1167

> BS11594.pep
MFGHLSLLAALFFIGTLKDFRVAGLRLTEVRIPMYVIKGTAAQLECLYDL
DGEALYSVKWYKDGNEFYRYVPRDMPPAQTFLLPGVNVDLHNSSDAIVTL
RNVNLQSAGRFRCEVSGEAPSFQTVTEHGDMIVAYLPDEGSPKISGGRPR
YQIGDYVRVNCTAGRSKPAVKLSWQVNGEPVEQQKLRKYDTIVSGRDGLE
TSVLGLQFRVEQKHFRKGNMKLKCIAELSTVYWRCNEESVEGDRPQKAPV
LESRETVYASNSRADPVQGTSYRELFVTKILSLLFVQPNAASSTASAPST
PITPLVLLPVALAVMVMATLAQGITRDIDTDKISMDRTAPGGIGITKETQ
QARELLAGRKEENRRTSHGKSATQLEKIALTAR*

BS11594.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:46
Subject Length Description Subject Range Query Range Score Percent Strand
beat-IIIc-PA 383 CG15138-PA 1..383 1..383 1960 100 Plus
beat-IIIc-PB 361 CG15138-PB 1..361 1..383 1819 94.3 Plus
beat-IIIb-PD 404 CG33179-PD 31..295 25..297 788 55.3 Plus
beat-IIIa-PE 343 CG12621-PE 70..308 23..262 774 60.8 Plus
beat-IIIa-PD 343 CG12621-PD 70..308 23..262 774 60.8 Plus