Clone Sequence Records
BS11594.3prime Sequence
890 bp (819 high quality bases) assembled on 2006-05-08
> BS11594.3prime
ATGGTCTAGAAAGCTTCTACCGTGCAGTCAATGCAATTTTCTCCAGCTGC
GTTGCGGATTTTCCGTGACTCGTCCTGCGATTTTCCTCCTTGCGGCCAGC
CAGCAACTCTCTCGCCTGCTGAGTTTCTTTCGTTATCCCAATCCCTCCAG
GCGCTGTCCGATCCATGGATATTTTATCTGTATCTATATCTCTCGTGATT
CCCTGCGCCAGGGTTGCCATCACCATCACCGCCAGCGCCACCGGAAGGAG
GACGAGTGGCGTGATTGGTGTGGAGGGCGCTGAAGCCGTGGAACTGGCTG
CATTTGGTTGGACGAACAAGAGCGATAAGATTTTGGTCACAAATAATTCC
CGGTAAGACGTACCTTGGACGGGATCGGCGCGTGAGTTGCTGGCGTAGAC
CGTTTCCCGGGACTCGAGCACCGGCGCCTTCTGCGGCCGGTCGCCCTCCA
CGGACTCCTCGTTGCACCTCCAGTACACGGTCGACAATTCGGCTATGCAC
TTTAGTTTCATGTTGCCTTTGCGAAAGTGTTTCTGTTCCACCCGGAATTG
AAGGCCCAGCACAGAAGTTTCTAGACCATCTCGTCCCGATACAATTGTGT
CGTATTTGCGGAGTTTCTGCTGCTCAACTGGCTCTCCATTCACTTGCCAG
GATAGTTTCACAGCAGGCTTGGAACGTCCTGCGGTGCAATTAACCCGAAC
ATAGTCTCCGATTTGGTAACGCGGTCGTCCACCGCTGATTTTCGGTGATC
CTTCGTCCGGAAGATACGCAACAATCATGTCGCCGTGCTCGGTGACCGTT
TGGAAGGAGGGTGCCTCACCAGAAACTTCGCACCGGAAGCGGCCCGCCGA
CTGCAGATTGACGTTGCGCAGCGTAACAATCGCGTCGCTC
BS11594.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15138-PA | 1152 | beat-IIIc-RA | 279..1152 | 890..17 | 4370 | 100 | Minus |
CG15138-PB | 1086 | beat-IIIc-RB | 279..805 | 890..364 | 2635 | 100 | Minus |
CG15138-PB | 1086 | beat-IIIc-RB | 804..1086 | 299..17 | 1415 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:39:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
beat-IIIc-RA | 1709 | CG15138-RA | 716..1589 | 890..17 | 4370 | 100 | Minus |
beat-IIIc-RB | 3836 | CG15138-RB | 716..1242 | 890..364 | 2635 | 100 | Minus |
beat-IIIc-RB | 3836 | CG15138-RB | 1241..1523 | 299..17 | 1415 | 100 | Minus |
beat-IIIb-RD | 3249 | CG33179-RD | 1759..1878 | 517..398 | 195 | 77.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:38:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17189950..17190434 | 17..501 | 2425 | 100 | Plus |
2L | 23513712 | 2L | 17190834..17191099 | 500..765 | 1330 | 100 | Plus |
2L | 23513712 | 2L | 17193525..17193649 | 766..890 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:39:02 has no hits.
BS11594.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:14:04 Download gff for
BS11594.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15138-PA | 279..1152 | 17..890 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:46:37 Download gff for
BS11594.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15138-PA | 279..1152 | 17..890 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:17:32 Download gff for
BS11594.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-IIIc-RA | 716..1599 | 6..890 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:15:05 Download gff for
BS11594.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-IIIc-RA | 716..1599 | 6..890 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:15:05 Download gff for
BS11594.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17189940..17190432 | 6..499 | 98 | <- | Plus |
2L | 17190834..17191099 | 500..765 | 100 | <- | Plus |
2L | 17193525..17193649 | 766..890 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:17:32 Download gff for
BS11594.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17193525..17193649 | 766..890 | 100 | | Plus |
arm_2L | 17189940..17190432 | 6..499 | 98 | <- | Plus |
arm_2L | 17190834..17191099 | 500..765 | 100 | <- | Plus |
BS11594.5prime Sequence
912 bp (752 high quality bases) assembled on 2006-05-08
> BS11594.5prime
GAAGTTATCAGTCGACATGTTTGGCCATCTCAGTTTGCTGGCCGCTCTGT
TTTTCATCGGCACATTGAAAGATTTCCGCGTTGCTGGGCTGAGACTGACC
GAGGTTCGCATTCCGATGTACGTGATTAAGGGTACCGCGGCGCAGTTGGA
GTGTCTTTACGATCTGGATGGCGAGGCCCTCTACTCCGTGAAATGGTACA
AGGATGGCAACGAGTTCTACCGCTATGTGCCGAGGGATATGCCGCCTGCC
CAAACGTTCCTGCTGCCTGGTGTTAACGTCGATTTACACAACTCGAGCGA
CGCGATTGTTACGCTGCGCAACGTCAATCTGCAGTCGGCGGGCCGCTTCC
GGTGCGAAGTTTCTGGTGAGGCACCCTCCTTCCAAACGGTCACCGAGCAC
GGCGACATGATTGTTGCGTATCTTCCGGACGAAGGATCACCGAAAATCAG
CGGTGGACGACCGCGTTACCAAATCGGAGACTATGTTCGGGTTAATTGCA
CCGCAGGACGTTCCAAGCCTGCTGTGAAACTATCCTGGCAAGTGAATGGA
GAGCCAGTTGAGCAGCAGAAACTCCGCAAATACGACACAATTGTATCGGG
ACGAGATGGTCTAGAAACTTCTGTGCTGGGCCTTCAATTCCGGGTGGAAC
AGAAACACTTTCGCAAAGGCAACATGAAACTAAAGTGCATAGCCGAATTG
TCGACCGTGTACTGGAGGTGCAACGAGGAGTCCGTGGAGGGCGACCGGCC
GCAGAAGGCGCCGGTGCTCGAGTCCCGGGAAACGGTCTACGCCAGCAACT
CACGCGCCGATCCCGTCCAAGGTACGTCTTACCGGGAATTATTTGTGACC
AAAATCTTATCGCTCTTGTTCGTCCAACCAAATGCAGCCAGTTCCACGGC
TTCAGCGCCCTC
BS11594.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15138-PA | 1152 | beat-IIIc-RA | 1..896 | 17..912 | 4455 | 99.8 | Plus |
CG15138-PB | 1086 | beat-IIIc-RB | 1..805 | 17..821 | 4000 | 99.8 | Plus |
CG15138-PB | 1086 | beat-IIIc-RB | 804..830 | 886..912 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:22:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
beat-IIIc-RA | 1709 | CG15138-RA | 436..1333 | 15..912 | 4475 | 99.9 | Plus |
beat-IIIc-RB | 3836 | CG15138-RB | 436..1242 | 15..821 | 4020 | 99.9 | Plus |
beat-IIIb-RD | 3249 | CG33179-RD | 1254..1510 | 160..416 | 310 | 74.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:22:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17190834..17191099 | 685..420 | 1330 | 100 | Minus |
2L | 23513712 | 2L | 17190206..17190434 | 912..684 | 1145 | 100 | Minus |
2L | 23513712 | 2L | 17196875..17197088 | 283..70 | 1070 | 100 | Minus |
2L | 23513712 | 2L | 17193525..17193660 | 419..284 | 680 | 100 | Minus |
2L | 23513712 | 2L | 17251509..17251565 | 71..15 | 270 | 98.2 | Minus |
2L | 23513712 | 2L | 16984695..16984781 | 160..246 | 240 | 85.1 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:22:30 has no hits.
BS11594.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:14:05 Download gff for
BS11594.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15138-PA | 1..896 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:46:38 Download gff for
BS11594.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15138-PA | 1..896 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:10:36 Download gff for
BS11594.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-IIIc-RA | 430..1333 | 9..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:22:11 Download gff for
BS11594.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-IIIc-RA | 430..1333 | 9..912 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:22:11 Download gff for
BS11594.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17190834..17191099 | 420..685 | 100 | <- | Minus |
2L | 17193525..17193660 | 284..419 | 100 | <- | Minus |
2L | 17196875..17197086 | 72..283 | 100 | <- | Minus |
2L | 17251509..17251571 | 9..71 | 95 | | Minus |
2L | 17190206..17190432 | 686..912 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:10:36 Download gff for
BS11594.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17190206..17190432 | 686..912 | 100 | <- | Minus |
arm_2L | 17190834..17191099 | 420..685 | 100 | <- | Minus |
arm_2L | 17193525..17193660 | 284..419 | 100 | <- | Minus |
arm_2L | 17196875..17197086 | 72..283 | 100 | <- | Minus |
arm_2L | 17251509..17251571 | 9..71 | 95 | | Minus |
BS11594.complete Sequence
1184 bp assembled on 2006-11-01
GenBank Submission: FJ636912
> BS11594.complete
GAAGTTATCAGTCGACATGTTTGGCCATCTCAGTTTGCTGGCCGCTCTGT
TTTTCATCGGCACATTGAAAGATTTCCGCGTTGCTGGGCTGAGACTGACC
GAGGTTCGCATTCCGATGTACGTGATTAAGGGTACCGCGGCGCAGTTGGA
GTGTCTTTACGATCTGGATGGCGAGGCCCTCTACTCCGTGAAATGGTACA
AGGATGGCAACGAGTTCTACCGCTATGTGCCGAGGGATATGCCGCCTGCC
CAAACGTTCCTGCTGCCTGGTGTTAACGTCGATTTACACAACTCGAGCGA
CGCGATTGTTACGCTGCGCAACGTCAATCTGCAGTCGGCGGGCCGCTTCC
GGTGCGAAGTTTCTGGTGAGGCACCCTCCTTCCAAACGGTCACCGAGCAC
GGCGACATGATTGTTGCGTATCTTCCGGACGAAGGATCACCGAAAATCAG
CGGTGGACGACCGCGTTACCAAATCGGAGACTATGTTCGGGTTAATTGCA
CCGCAGGACGTTCCAAGCCTGCTGTGAAACTATCCTGGCAAGTGAATGGA
GAGCCAGTTGAGCAGCAGAAACTCCGCAAATACGACACAATTGTATCGGG
ACGAGATGGTCTAGAAACTTCTGTGCTGGGCCTTCAATTCCGGGTGGAAC
AGAAACACTTTCGCAAAGGCAACATGAAACTAAAGTGCATAGCCGAATTG
TCGACCGTGTACTGGAGGTGCAACGAGGAGTCCGTGGAGGGCGACCGGCC
GCAGAAGGCGCCGGTGCTCGAGTCCCGGGAAACGGTCTACGCCAGCAACT
CACGCGCCGATCCCGTCCAAGGTACGTCTTACCGGGAATTATTTGTGACC
AAAATCTTATCGCTCTTGTTCGTCCAACCAAATGCAGCCAGTTCCACGGC
TTCAGCGCCCTCCACACCAATCACGCCACTCGTCCTCCTTCCGGTGGCGC
TGGCGGTGATGGTGATGGCAACCCTGGCGCAGGGAATCACGAGAGATATA
GATACAGATAAAATATCCATGGATCGGACAGCGCCTGGAGGGATTGGGAT
AACGAAAGAAACTCAGCAGGCGAGAGAGTTGCTGGCTGGCCGCAAGGAGG
AAAATCGCAGGACGAGTCACGGAAAATCCGCAACGCAGCTGGAGAAAATT
GCATTGACTGCACGGTAGAAGCTTTCTAGACCAT
BS11594.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:06:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
beat-IIIc-RA | 1152 | CG15138-PA | 1..1152 | 17..1168 | 5745 | 99.9 | Plus |
beat-IIIc-RB | 1086 | CG15138-PB | 1..805 | 17..821 | 4010 | 99.9 | Plus |
beat-IIIc-RB | 1086 | CG15138-PB | 804..1086 | 886..1168 | 1415 | 100 | Plus |
beat-IIIb-RD | 1215 | CG33179-PD | 162..418 | 160..416 | 310 | 74.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:06:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
beat-IIIc-RA | 1709 | CG15138-RA | 436..1589 | 15..1168 | 5755 | 99.9 | Plus |
beat-IIIc-RB | 3836 | CG15138-RB | 436..1242 | 15..821 | 4020 | 99.9 | Plus |
beat-IIIc-RB | 3836 | CG15138-RB | 1241..1523 | 886..1168 | 1415 | 100 | Plus |
beat-IIIb-RD | 3249 | CG33179-RD | 1254..1510 | 160..416 | 310 | 74.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:06:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17189950..17190434 | 1168..684 | 2425 | 100 | Minus |
2L | 23513712 | 2L | 17190834..17191099 | 685..420 | 1330 | 100 | Minus |
2L | 23513712 | 2L | 17196875..17197088 | 283..70 | 1070 | 100 | Minus |
2L | 23513712 | 2L | 17193525..17193660 | 419..284 | 680 | 100 | Minus |
2L | 23513712 | 2L | 17251509..17251565 | 71..15 | 270 | 98.2 | Minus |
2L | 23513712 | 2L | 16984695..16984781 | 160..246 | 240 | 85.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:06:12 has no hits.
BS11594.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:58 Download gff for
BS11594.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-IIIc-RA | 1..1152 | 17..1168 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:40:56 Download gff for
BS11594.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-IIIc-RA | 442..1587 | 23..1168 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:13 Download gff for
BS11594.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-IIIc-RA | 444..1589 | 23..1168 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:58 Download gff for
BS11594.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-IIIc-RA | 428..1597 | 9..1179 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:04:16 Download gff for
BS11594.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-IIIc-RA | 444..1589 | 23..1168 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:04:16 Download gff for
BS11594.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17189950..17190432 | 686..1168 | 100 | <- | Minus |
2L | 17190834..17191099 | 420..685 | 100 | <- | Minus |
2L | 17193525..17193660 | 284..419 | 100 | <- | Minus |
2L | 17196875..17197086 | 72..283 | 100 | <- | Minus |
2L | 17251509..17251557 | 23..71 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:13 Download gff for
BS11594.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17196875..17197086 | 72..283 | 100 | <- | Minus |
arm_2L | 17251509..17251557 | 23..71 | 97 | | Minus |
arm_2L | 17189950..17190432 | 686..1168 | 100 | <- | Minus |
arm_2L | 17190834..17191099 | 420..685 | 100 | <- | Minus |
arm_2L | 17193525..17193660 | 284..419 | 100 | <- | Minus |
BS11594.pep Sequence
Translation from 16 to 1167
> BS11594.pep
MFGHLSLLAALFFIGTLKDFRVAGLRLTEVRIPMYVIKGTAAQLECLYDL
DGEALYSVKWYKDGNEFYRYVPRDMPPAQTFLLPGVNVDLHNSSDAIVTL
RNVNLQSAGRFRCEVSGEAPSFQTVTEHGDMIVAYLPDEGSPKISGGRPR
YQIGDYVRVNCTAGRSKPAVKLSWQVNGEPVEQQKLRKYDTIVSGRDGLE
TSVLGLQFRVEQKHFRKGNMKLKCIAELSTVYWRCNEESVEGDRPQKAPV
LESRETVYASNSRADPVQGTSYRELFVTKILSLLFVQPNAASSTASAPST
PITPLVLLPVALAVMVMATLAQGITRDIDTDKISMDRTAPGGIGITKETQ
QARELLAGRKEENRRTSHGKSATQLEKIALTAR*
BS11594.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
beat-IIIc-PA | 383 | CG15138-PA | 1..383 | 1..383 | 1960 | 100 | Plus |
beat-IIIc-PB | 361 | CG15138-PB | 1..361 | 1..383 | 1819 | 94.3 | Plus |
beat-IIIb-PD | 404 | CG33179-PD | 31..295 | 25..297 | 788 | 55.3 | Plus |
beat-IIIa-PE | 343 | CG12621-PE | 70..308 | 23..262 | 774 | 60.8 | Plus |
beat-IIIa-PD | 343 | CG12621-PD | 70..308 | 23..262 | 774 | 60.8 | Plus |