Clone Sequence Records
BS11602.3prime Sequence
795 bp (733 high quality bases) assembled on 2006-06-16
> BS11602.3prime
ATGGTCTAGAAAGCTTTTATAGCGTGTAGCCCAATTTGGAGACCCAACCC
AAACCCTCGACAGTGGTCGTCTTCGGCTTGTACTCGCAACCGATCCATCC
ATCATAGCCGAATTCCTGGAGAGCCTTGAACACAAATCCGTAGTCCAGCT
CACCGGAAACATCCGGCTCGTGGCGATGCGGCACCTGGGCGATCTGAAAG
TGTCCAATCAGCGCCTTGTACTCCTCGAGCGTCTTGGAAACGTTGCCGTG
CAAATGCTGCAGGTGATACAGATCGGCCAGCAATTGAATGTTGTCCGCAG
CCACATCGGCCAGAATTCCAGCGGCTTTGGAGTATGAATTCATGTAGTAG
CCAGGCACGGCGTACTTGTTAATTGGCTCTATCACGCCGATCATTTTACT
GGCTCTAAGGCTATCGGCGGCGATCTTTAGATTGGCGGTATACGTCTTCG
TGTAGTCACTCTCCTGGCCGCCCTTGAAGAGTCCAGCGGTTAGATGAATC
TTGCCACAGTTAACCTGTCGGGCGAAATCAATGGTGGCATCCAATTGGCT
ACGGAACAGCTTTTCCGAGCCGGGCACACTGGTGGAGCCGAAACGCAGCT
GATCGTCGCTCTTGTCGAAGGCCAGATTCACCAGACTGACCACCACACCC
GTCTCCTTTACGGCGGACACCACGTCGCTCGTCTCGCCTTCGGGATAGGG
GATCTCTACCGCACGGAATCCGTTCTGGTGGGCCAGACGAATTCGCTCCG
CGATCGACGTCGCTCTTTCCGTGAACAAAAAGTTCAGATTCGCTG
BS11602.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:54:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2227-PA | 795 | Gip-RA | 17..795 | 795..17 | 3895 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:04:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gip-RA | 996 | CG2227-RA | 127..905 | 795..17 | 3895 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:04:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10328968..10329746 | 17..795 | 3895 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:04:49 has no hits.
BS11602.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:32 Download gff for
BS11602.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2227-PA | 17..795 | 17..795 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:30:16 Download gff for
BS11602.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gip-RA | 104..882 | 17..795 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:26:25 Download gff for
BS11602.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gip-RA | 127..905 | 17..795 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:26:25 Download gff for
BS11602.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10328968..10329746 | 17..795 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:30:16 Download gff for
BS11602.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10223001..10223779 | 17..795 | 100 | | Plus |
BS11602.5prime Sequence
825 bp (779 high quality bases) assembled on 2006-06-16
> BS11602.5prime
GAAGTTATCAGTCGACATGGCACTCAAGTTTGCAGCGAATCTGAACTTTT
TGTTCACGGAAAGAGCGACGTCGATCGCGGAGCGAATTCGTCTGGCCCAC
CAGAACGGATTCCGTGCGGTAGAGATCCCCTATCCCGAAGGCGAGACGAG
CGACGTGGTGTCCGCCGTAAAGGAGACGGGTGTGGTGGTCAGTCTGGTGA
ATCTGGCCTTCGACAAGAGCGACGATCAGCTGCGTTTCGGCTCCACCAGT
GTGCCCGGCTCGGAAAAGCTGTTCCGTAGCCAATTGGATGCCACCATTGA
TTTCGCCCGACAGGTTAACTGTGGCAAGATTCATCTAACCGCTGGACTCT
TCAAGGGCGGCCAGGAGAGTGACTACACGAAGACGTATACCGCCAATCTA
AAGATCGCCGCCGATAGCCTTAGAGCCAGTAAAATGATCGGCGTGATAGA
GCCAATTAACAAGTACGCCGTGCCTGGCTACTACATGAATTCATACTCCA
AAGCCGCTGGAATTCTGGCCGATGTGGCTGCGGACAACATTCAATTGCTG
GCCGATCTGTATCACCTGCAGCATTTGCACGGCAACGTTTCCAAGACGCT
CGAGGAGTACAAGGCGCTGATTGGACACTTTCAGATCGCCCAGGTGCCGC
ATCGCCACGAGCCGGATGTTTCCGGTGAGCTGGACTACGGATTTGTGTTC
AAGGCTCTCCAGGAATTCGGCTATGATGGATGGATCGGTTGCGAGTACAA
GCCGAAGACGACCACTGTCGAGGGTTTGGGTTGGGTCTCCAAATTGGGCT
ACACGCTAATAAAGCTTTCTAGACC
BS11602.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:55:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2227-PA | 795 | Gip-RA | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:04:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gip-RA | 996 | CG2227-RA | 111..902 | 17..808 | 3960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:04:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10328971..10329762 | 808..17 | 3960 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:04:43 has no hits.
BS11602.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:33 Download gff for
BS11602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2227-PA | 1..795 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:05:39 Download gff for
BS11602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gip-RA | 88..884 | 17..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:05:40 Download gff for
BS11602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gip-RA | 111..907 | 17..817 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:05:40 Download gff for
BS11602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10328966..10329762 | 17..817 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:05:39 Download gff for
BS11602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10222999..10223795 | 17..817 | 99 | | Minus |
BS11602.complete Sequence
827 bp assembled on 2007-10-17
GenBank Submission: FJ636913
> BS11602.complete
GAAGTTATCAGTCGACATGGCACTCAAGTTTGCAGCGAATCTGAACTTTT
TGTTCACGGAAAGAGCGACGTCGATCGCGGAGCGAATTCGTCTGGCCCAC
CAGAACGGATTCCGTGCGGTAGAGATCCCCTATCCCGAAGGCGAGACGAG
CGACGTGGTGTCCGCCGTAAAGGAGACGGGTGTGGTGGTCAGTCTGGTGA
ATCTGGCCTTCGACAAGAGCGACGATCAGCTGCGTTTCGGCTCCACCAGT
GTGCCCGGCTCGGAAAAGCTGTTCCGTAGCCAATTGGATGCCACCATTGA
TTTCGCCCGACAGGTTAACTGTGGCAAGATTCATCTAACCGCTGGACTCT
TCAAGGGCGGCCAGGAGAGTGACTACACGAAGACGTATACCGCCAATCTA
AAGATCGCCGCCGATAGCCTTAGAGCCAGTAAAATGATCGGCGTGATAGA
GCCAATTAACAAGTACGCCGTGCCTGGCTACTACATGAATTCATACTCCA
AAGCCGCTGGAATTCTGGCCGATGTGGCTGCGGACAACATTCAATTGCTG
GCCGATCTGTATCACCTGCAGCATTTGCACGGCAACGTTTCCAAGACGCT
CGAGGAGTACAAGGCGCTGATTGGACACTTTCAGATCGCCCAGGTGCCGC
ATCGCCACGAGCCGGATGTTTCCGGTGAGCTGGACTACGGATTTGTGTTC
AAGGCTCTCCAGGAATTCGGCTATGATGGATGGATCGGTTGCGAGTACAA
GCCGAAGACGACCACTGTCGAGGGTTTGGGTTGGGTCTCCAAATTGGGCT
ACACGCTATAAAAGCTTTCTAGACCAT
BS11602.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:03:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gip-RA | 795 | CG2227-PA | 1..795 | 17..811 | 3975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:03:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gip-RA | 996 | CG2227-RA | 111..905 | 17..811 | 3975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:03:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10328968..10329762 | 811..17 | 3975 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 17:03:11 has no hits.
BS11602.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:14:10 Download gff for
BS11602.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gip-RA | 1..795 | 17..811 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:45:01 Download gff for
BS11602.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gip-RA | 88..882 | 17..811 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:37 Download gff for
BS11602.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gip-RA | 88..880 | 17..809 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:31:55 Download gff for
BS11602.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gip-RA | 88..880 | 17..809 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:33:25 Download gff for
BS11602.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gip-RA | 111..903 | 17..809 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:33:25 Download gff for
BS11602.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10328970..10329762 | 17..809 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:37 Download gff for
BS11602.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10223003..10223795 | 17..809 | 100 | | Minus |
BS11602.pep Sequence
Translation from 16 to 810
> BS11602.pep
MALKFAANLNFLFTERATSIAERIRLAHQNGFRAVEIPYPEGETSDVVSA
VKETGVVVSLVNLAFDKSDDQLRFGSTSVPGSEKLFRSQLDATIDFARQV
NCGKIHLTAGLFKGGQESDYTKTYTANLKIAADSLRASKMIGVIEPINKY
AVPGYYMNSYSKAAGILADVAADNIQLLADLYHLQHLHGNVSKTLEEYKA
LIGHFQIAQVPHRHEPDVSGELDYGFVFKALQEFGYDGWIGCEYKPKTTT
VEGLGWVSKLGYTL*
BS11602.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:32:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gip-PA | 264 | CG2227-PA | 1..264 | 1..264 | 1363 | 100 | Plus |
