Clone Sequence Records
BS11604.3prime Sequence
384 bp (384 high quality bases) assembled on 2006-06-16
> BS11604.3prime
ATGGTCTAGAAAGCTTTTACGCCTCATCACCCTTGGTGGCACGTGTGTAG
ATGACCTGGGAATGATGCTGCACGACCTGCTTGATCAGACCCTTCTCGCG
CAGCTCGATGAGAGCACGCTTGGCCAGGGAGCCGCGGATCTTCAGACGCT
CGGAGACCACCGATGGGGTGATCAGCTTGTAGGCGGGCACTTCCTTGTAC
AGCTTCTCGTAGGTGGCCTTGTCGAACAGCACCTGGTTGTTCAGCTTGTC
CCTGACTTTTCCCTTGGACCACTTCTTCTTCTTGGCCTTGCCGCCGCCGG
ATCCCTCCTTCTTCTTTTGTGTCTTTTGCGGCTGCTTGGCCGAAGACTTC
GCGTCCTTCTTAGGCGGCATGTCGACTGATAACT
BS11604.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6684-PA | 354 | RpS25-RA | 1..354 | 370..17 | 1770 | 100 | Minus |
| CG6684-PB | 354 | RpS25-RB | 1..354 | 370..17 | 1770 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:35:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS25-RB | 515 | CG6684-RB | 27..381 | 370..16 | 1775 | 100 | Minus |
| RpS25-RA | 850 | CG6684-RA | 27..381 | 370..16 | 1775 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:35:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11215691..11215970 | 89..368 | 1400 | 100 | Plus |
| 3R | 32079331 | 3R | 11215550..11215625 | 16..91 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:35:12 has no hits.
BS11604.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:34 Download gff for
BS11604.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6684-PB | 1..354 | 17..370 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:43:13 Download gff for
BS11604.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS25-RA | 22..381 | 16..379 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:33 Download gff for
BS11604.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS25-RA | 22..381 | 16..379 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:33 Download gff for
BS11604.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11215550..11215624 | 16..90 | 100 | <- | Plus |
| 3R | 11215693..11215977 | 91..378 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:43:13 Download gff for
BS11604.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7041272..7041346 | 16..90 | 100 | <- | Plus |
| arm_3R | 7041415..7041699 | 91..378 | 98 | | Plus |
BS11604.5prime Sequence
384 bp (384 high quality bases) assembled on 2006-06-16
> BS11604.5prime
GAAGTTATCAGTCGACATGCCGCCTAAGAAGGACGCGAAGTCTTCGGCCA
AGCAGCCGCAAAAGACACAAAAGAAGAAGGAGGGATCCGGCGGCGGCAAG
GCCAAGAAGAAGAAGTGGTCCAAGGGAAAAGTCAGGGACAAGCTGAACAA
CCAGGTGCTGTTCGACAAGGCCACCTACGAGAAGCTGTACAAGGAAGTGC
CCGCCTACAAGCTGATCACCCCATCGGTGGTCTCCGAGCGTCTGAAGATC
CGCGGCTCCCTGGCCAAGCGTGCTCTCATCGAGCTGCGCGAGAAGGGTCT
GATCAAGCAGGTCGTGCAGCATCATTCCCAGGTCATCTACACACGTGCCA
CCAAGGGTGATGAGGCGTAAAAGCTTTCTAGACC
BS11604.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6684-PA | 354 | RpS25-RA | 1..354 | 17..370 | 1770 | 100 | Plus |
| CG6684-PB | 354 | RpS25-RB | 1..354 | 17..370 | 1770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:15:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS25-RB | 515 | CG6684-RB | 27..381 | 17..371 | 1775 | 100 | Plus |
| RpS25-RA | 850 | CG6684-RA | 27..381 | 17..371 | 1775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:14:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11215691..11215970 | 298..19 | 1400 | 100 | Minus |
| 3R | 32079331 | 3R | 11215550..11215625 | 371..296 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:15:02 has no hits.
BS11604.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:34 Download gff for
BS11604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6684-PB | 1..354 | 17..370 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:24:11 Download gff for
BS11604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS25-RA | 22..381 | 8..371 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:08:11 Download gff for
BS11604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS25-RA | 22..381 | 8..371 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:08:11 Download gff for
BS11604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11215550..11215624 | 297..371 | 100 | <- | Minus |
| 3R | 11215693..11215977 | 9..296 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:24:11 Download gff for
BS11604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7041272..7041346 | 297..371 | 100 | <- | Minus |
| arm_3R | 7041415..7041699 | 9..296 | 98 | | Minus |
BS11604.complete Sequence
386 bp assembled on 2006-11-01
GenBank Submission: FJ636914
> BS11604.complete
GAAGTTATCAGTCGACATGCCGCCTAAGAAGGACGCGAAGTCTTCGGCCA
AGCAGCCGCAAAAGACACAAAAGAAGAAGGAGGGATCCGGCGGCGGCAAG
GCCAAGAAGAAGAAGTGGTCCAAGGGAAAAGTCAGGGACAAGCTGAACAA
CCAGGTGCTGTTCGACAAGGCCACCTACGAGAAGCTGTACAAGGAAGTGC
CCGCCTACAAGCTGATCACCCCATCGGTGGTCTCCGAGCGTCTGAAGATC
CGCGGCTCCCTGGCCAAGCGTGCTCTCATCGAGCTGCGCGAGAAGGGTCT
GATCAAGCAGGTCGTGCAGCATCATTCCCAGGTCATCTACACACGTGCCA
CCAAGGGTGATGAGGCGTAAAAGCTTTCTAGACCAT
BS11604.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:24:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS25-RB | 354 | CG6684-PB | 1..354 | 17..370 | 1770 | 100 | Plus |
| RpS25-RA | 354 | CG6684-PA | 1..354 | 17..370 | 1770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:24:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS25-RB | 515 | CG6684-RB | 27..381 | 17..371 | 1775 | 100 | Plus |
| RpS25-RA | 850 | CG6684-RA | 27..381 | 17..371 | 1775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:24:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11215691..11215970 | 298..19 | 1400 | 100 | Minus |
| 3R | 32079331 | 3R | 11215550..11215625 | 371..296 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:24:25 has no hits.
BS11604.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:59 Download gff for
BS11604.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS25-RB | 1..354 | 17..370 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:13 Download gff for
BS11604.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS25-RA | 50..409 | 8..371 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:40 Download gff for
BS11604.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS25-RA | 27..378 | 17..368 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:59 Download gff for
BS11604.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS25-RA | 50..409 | 8..371 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:47 Download gff for
BS11604.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS25-RA | 27..378 | 17..368 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:47 Download gff for
BS11604.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11215553..11215624 | 297..368 | 100 | <- | Minus |
| 3R | 11215693..11215971 | 17..296 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:40 Download gff for
BS11604.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7041275..7041346 | 297..368 | 100 | <- | Minus |
| arm_3R | 7041415..7041693 | 17..296 | 99 | | Minus |
BS11604.pep Sequence
Translation from 16 to 369
> BS11604.pep
MPPKKDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFD
KATYEKLYKEVPAYKLITPSVVSERLKIRGSLAKRALIELREKGLIKQVV
QHHSQVIYTRATKGDEA*
BS11604.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS25-PB | 117 | CG6684-PB | 1..117 | 1..117 | 591 | 100 | Plus |
| RpS25-PA | 117 | CG6684-PA | 1..117 | 1..117 | 591 | 100 | Plus |
