BS11605.complete Sequence
1349 bp assembled on 2006-11-01
GenBank Submission: FJ636915
> BS11605.complete
GAAGTTATCAGTCGACATGTGGAACCACCCAAGCCAGCGCTGGCTCATCT
TGATCTGCGTTATATGTTTGCTGTCTTTTGCGCTGGCCAATTCGCTTCAT
GGCTATGCTAATGCTGAAGGTCATCCAGTGGAGATTTCGGCCACATTGCC
AGGCCAGCTGAAGTTTGTGCATGTCATATATCGCCACGGCGACAGAACGC
CCGTGGATCCCTATCCCACGGACCCCTGGGGCGACAGGAAGTTCTGGCCC
ACCGGCTGGGGAGATTTGACCAATTTGGGCAAGCAAGAGCACTACGACCT
GGGAAAATGGCTGCGGAATCGCTATTCAAACCTCCTACCGCCTATATACT
CCAACGAGAACATCTACGTTCAGTCCACCGACGTGGATCGCACATTGATG
AGTGCCCAGTCGAATCTGGCTGGTCTCTACGAGCCGCAAGGGGAAGACAT
CTGGAACACGGACATCAACTGGCAACCCATACCCATTCACACCTCGCCCG
AGAGGGAGGATCCCATACTGGCCGCTAAGGCACCTTGTCCTGCCTATGAC
TATGAGCTGGCCAGCCTGGAATCATCGCCAGAATTCAAGGCCTTGACCGA
AAAACACCGAAATCTGTTTGCTTATTTGAGCGAAAAAGGCGGACGCCCCG
TGAAGACCTTCATTGATGCCCAGTATTTGAATAACACCTTGTTCATTGAG
AATCTGTACAACATGACACTGCCAAAATGGACTAAAATGGTTTATGGGAG
AGAGGAGCTCACGTATGTATCGAATTTCGCTTTCGCCATCAGCTCTTATA
CGCGAAAGCTGGCGAGACTGAAGGCGGGGCCTTTGCTAAAGGACATATTC
CAGCGGTTTAAAGAGAAATCCTCCGGGAGCCTAAAACCAGATCGTTCGAT
GTGGGTCTACAGTGCTCATGACACCACGGTAGCCAGCGTTTTGAATGCGC
TGAAATTATTTGAGCTGCACAGTCCTCCCTACACGGCGTGCATAATGATG
GAGTTGCGTGTGGATGAGACCAACACCCCGTTGGTCTCTATTTTCTACAA
GAACACCACAGCTGAACCCCTGCCTCTGGACATACCTGGTTGTGGGCCTT
CCTGTCCGCTGACCAAACTTATGAACATCTACGAGGACGTTTTGCCCGTA
GATTGGGAGCGCGAGTGCAAGCTATCCACGATGATGATGACTTATGAGGA
AGCCAATCTTGGAACTGCGACGGGCATTCTCATTTTAATCGTAATTGCGC
TGCTGTTCGCCAGCTATGGCCTCATGATCTACTACCGACGTCGCAACTAC
AAGCTGTATTCCTCGTACTCTCAAATGGCTTAGAAGCTTTCTAGACCAT
BS11605.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:58:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acph-1-RA | 1317 | CG7899-PA | 1..1317 | 17..1333 | 6585 | 100 | Plus |
| Acph-1-RB | 1368 | CG7899-PB | 52..1368 | 17..1333 | 6585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:58:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acph-1-RA | 1944 | CG7899-RA | 188..1504 | 17..1333 | 6585 | 100 | Plus |
| Acph-1-RB | 1889 | CG7899-RB | 133..1449 | 17..1333 | 6585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:58:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29992083..29992772 | 964..275 | 3450 | 100 | Minus |
| 3R | 32079331 | 3R | 29991753..29992014 | 1224..963 | 1310 | 100 | Minus |
| 3R | 32079331 | 3R | 29992986..29993144 | 175..17 | 795 | 100 | Minus |
| 3R | 32079331 | 3R | 29991584..29991694 | 1333..1223 | 555 | 100 | Minus |
| 3R | 32079331 | 3R | 29992829..29992927 | 274..176 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:58:26 has no hits.
BS11605.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:00 Download gff for
BS11605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acph-1-RA | 1..1317 | 17..1333 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:01 Download gff for
BS11605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acph-1-RA | 178..1508 | 8..1339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:03:35 Download gff for
BS11605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acph-1-RB | 133..1449 | 17..1333 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:01 Download gff for
BS11605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acph-1-RA | 178..1508 | 8..1339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:09 Download gff for
BS11605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acph-1-RB | 133..1449 | 17..1333 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:09 Download gff for
BS11605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29991584..29991693 | 1224..1333 | 100 | <- | Minus |
| 3R | 29991754..29992012 | 965..1223 | 100 | <- | Minus |
| 3R | 29992083..29992772 | 275..964 | 100 | <- | Minus |
| 3R | 29992829..29992927 | 176..274 | 100 | <- | Minus |
| 3R | 29992986..29993144 | 17..175 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:35 Download gff for
BS11605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25817306..25817415 | 1224..1333 | 100 | <- | Minus |
| arm_3R | 25817476..25817734 | 965..1223 | 100 | <- | Minus |
| arm_3R | 25817805..25818494 | 275..964 | 100 | <- | Minus |
| arm_3R | 25818551..25818649 | 176..274 | 100 | <- | Minus |
| arm_3R | 25818708..25818866 | 17..175 | 100 | | Minus |
BS11605.pep Sequence
Translation from 16 to 1332
> BS11605.pep
MWNHPSQRWLILICVICLLSFALANSLHGYANAEGHPVEISATLPGQLKF
VHVIYRHGDRTPVDPYPTDPWGDRKFWPTGWGDLTNLGKQEHYDLGKWLR
NRYSNLLPPIYSNENIYVQSTDVDRTLMSAQSNLAGLYEPQGEDIWNTDI
NWQPIPIHTSPEREDPILAAKAPCPAYDYELASLESSPEFKALTEKHRNL
FAYLSEKGGRPVKTFIDAQYLNNTLFIENLYNMTLPKWTKMVYGREELTY
VSNFAFAISSYTRKLARLKAGPLLKDIFQRFKEKSSGSLKPDRSMWVYSA
HDTTVASVLNALKLFELHSPPYTACIMMELRVDETNTPLVSIFYKNTTAE
PLPLDIPGCGPSCPLTKLMNIYEDVLPVDWERECKLSTMMMTYEEANLGT
ATGILILIVIALLFASYGLMIYYRRRNYKLYSSYSQMA*
BS11605.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acph-1-PA | 438 | CG7899-PA | 1..438 | 1..438 | 2353 | 100 | Plus |
| Acph-1-PB | 455 | CG7899-PB | 18..455 | 1..438 | 2353 | 100 | Plus |
| CG9449-PK | 391 | CG9449-PK | 36..370 | 48..379 | 658 | 38.4 | Plus |
| CG9449-PH | 404 | CG9449-PH | 49..383 | 48..379 | 658 | 38.4 | Plus |
| CG9449-PG | 404 | CG9449-PG | 49..383 | 48..379 | 658 | 38.4 | Plus |
