Clone Sequence Records
BS11609.5prime Sequence
363 bp (363 high quality bases) assembled on 2006-06-16
> BS11609.5prime
GAAGTTATCAGTCGACATGTCCATCCAGAATTTAAACACTCGTGACCCCT
TTGCTGATGCAATCAAGGGCAATGATGATGATATTCAAGACGGGCTAGTG
CATATAAGAATCCAGCAGAGGAACGGTCGCAAGACGCTAACCACTGTCCA
GGGCCTGTCCGCGGAGTATGACTTGAAGAAGATAGTCCGCTCCTGCAAGA
AGGAATTCGCATGCAATGGCACTGTAATCGAGCACCCAGAGTATGGTGAG
GTTCTGCAGCTCCAGGGCGATCAGCGTGAGAACATCTGTCAATGGTTGAC
GAAGGTGGGTCTAGCTAAGCCGGATCAGCTGAAGGTGCACGGCTTCTAAA
AGCTTTCTAGACC
BS11609.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17737-PA | 333 | CG17737-RA | 1..333 | 17..349 | 1665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:50:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17737-RA | 681 | CG17737-RA | 159..491 | 17..349 | 1665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:50:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3223769..3223928 | 44..203 | 800 | 100 | Plus |
3L | 28110227 | 3L | 3224312..3224460 | 201..349 | 745 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:50:05 has no hits.
BS11609.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:35 Download gff for
BS11609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17737-PA | 1..333 | 17..349 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:32:12 Download gff for
BS11609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17737-RA | 149..497 | 5..357 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:54 Download gff for
BS11609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17737-RA | 149..497 | 5..357 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:54 Download gff for
BS11609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3223770..3223927 | 45..202 | 100 | -> | Plus |
3L | 3224314..3224466 | 203..357 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:32:12 Download gff for
BS11609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3223770..3223927 | 45..202 | 100 | -> | Plus |
arm_3L | 3224314..3224466 | 203..357 | 97 | | Plus |
BS11609.complete Sequence
365 bp assembled on 2006-11-01
GenBank Submission: FJ636916
> BS11609.complete
GAAGTTATCAGTCGACATGTCCATCCAGAATTTAAACACTCGTGACCCCT
TTGCTGATGCAATCAAGGGCAATGATGATGATATTCAAGACGGGCTAGTG
CATATAAGAATCCAGCAGAGGAACGGTCGCAAGACGCTAACCACTGTCCA
GGGCCTGTCCGCGGAGTATGACTTGAAGAAGATAGTCCGCTCCTGCAAGA
AGGAATTCGCATGCAATGGCACTGTAATCGAGCACCCAGAGTATGGTGAG
GTTCTGCAGCTCCAGGGCGATCAGCGTGAGAACATCTGTCAATGGTTGAC
GAAGGTGGGTCTAGCTAAGCCGGATCAGCTGAAGGTGCACGGCTTCTAAA
AGCTTTCTAGACCAT
BS11609.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:34:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17737-RA | 333 | CG17737-PA | 1..333 | 17..349 | 1665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:34:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17737-RA | 681 | CG17737-RA | 159..491 | 17..349 | 1665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:34:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3223769..3223928 | 44..203 | 800 | 100 | Plus |
3L | 28110227 | 3L | 3224312..3224460 | 201..349 | 745 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:34:07 has no hits.
BS11609.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:02 Download gff for
BS11609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17737-RA | 1..333 | 17..349 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:02 Download gff for
BS11609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17737-RA | 140..488 | 5..357 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:02 Download gff for
BS11609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17737-RA | 159..489 | 17..347 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:02 Download gff for
BS11609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17737-RA | 140..488 | 5..357 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:16 Download gff for
BS11609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17737-RA | 159..489 | 17..347 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:25:16 Download gff for
BS11609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3223770..3223927 | 45..202 | 100 | -> | Plus |
3L | 3223499..3223526 | 17..44 | 100 | -> | Plus |
3L | 3224314..3224458 | 203..347 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:02 Download gff for
BS11609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3223499..3223526 | 17..44 | 100 | -> | Plus |
arm_3L | 3223770..3223927 | 45..202 | 100 | -> | Plus |
arm_3L | 3224314..3224458 | 203..347 | 100 | | Plus |
BS11609.pep Sequence
Translation from 16 to 348
> BS11609.pep
MSIQNLNTRDPFADAIKGNDDDIQDGLVHIRIQQRNGRKTLTTVQGLSAE
YDLKKIVRSCKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKVGLA
KPDQLKVHGF*
BS11609.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17737-PA | 110 | CG17737-PA | 1..110 | 1..110 | 581 | 100 | Plus |