Clone BS11609 Report

Search the DGRC for BS11609

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:116
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG17737-RA
Protein status:BS11609.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11609.5prime Sequence

363 bp (363 high quality bases) assembled on 2006-06-16

> BS11609.5prime
GAAGTTATCAGTCGACATGTCCATCCAGAATTTAAACACTCGTGACCCCT
TTGCTGATGCAATCAAGGGCAATGATGATGATATTCAAGACGGGCTAGTG
CATATAAGAATCCAGCAGAGGAACGGTCGCAAGACGCTAACCACTGTCCA
GGGCCTGTCCGCGGAGTATGACTTGAAGAAGATAGTCCGCTCCTGCAAGA
AGGAATTCGCATGCAATGGCACTGTAATCGAGCACCCAGAGTATGGTGAG
GTTCTGCAGCTCCAGGGCGATCAGCGTGAGAACATCTGTCAATGGTTGAC
GAAGGTGGGTCTAGCTAAGCCGGATCAGCTGAAGGTGCACGGCTTCTAAA
AGCTTTCTAGACC

BS11609.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG17737-PA 333 CG17737-RA 1..333 17..349 1665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:50:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG17737-RA 681 CG17737-RA 159..491 17..349 1665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:50:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3223769..3223928 44..203 800 100 Plus
3L 28110227 3L 3224312..3224460 201..349 745 100 Plus
Blast to na_te.dros performed on 2015-02-03 06:50:05 has no hits.

BS11609.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:35 Download gff for BS11609.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17737-PA 1..333 17..349 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:32:12 Download gff for BS11609.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17737-RA 149..497 5..357 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:54 Download gff for BS11609.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17737-RA 149..497 5..357 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:54 Download gff for BS11609.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3223770..3223927 45..202 100 -> Plus
3L 3224314..3224466 203..357 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:32:12 Download gff for BS11609.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3223770..3223927 45..202 100 -> Plus
arm_3L 3224314..3224466 203..357 97   Plus

BS11609.complete Sequence

365 bp assembled on 2006-11-01

GenBank Submission: FJ636916

> BS11609.complete
GAAGTTATCAGTCGACATGTCCATCCAGAATTTAAACACTCGTGACCCCT
TTGCTGATGCAATCAAGGGCAATGATGATGATATTCAAGACGGGCTAGTG
CATATAAGAATCCAGCAGAGGAACGGTCGCAAGACGCTAACCACTGTCCA
GGGCCTGTCCGCGGAGTATGACTTGAAGAAGATAGTCCGCTCCTGCAAGA
AGGAATTCGCATGCAATGGCACTGTAATCGAGCACCCAGAGTATGGTGAG
GTTCTGCAGCTCCAGGGCGATCAGCGTGAGAACATCTGTCAATGGTTGAC
GAAGGTGGGTCTAGCTAAGCCGGATCAGCTGAAGGTGCACGGCTTCTAAA
AGCTTTCTAGACCAT

BS11609.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG17737-RA 333 CG17737-PA 1..333 17..349 1665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:34:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG17737-RA 681 CG17737-RA 159..491 17..349 1665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:34:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3223769..3223928 44..203 800 100 Plus
3L 28110227 3L 3224312..3224460 201..349 745 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:34:07 has no hits.

BS11609.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:02 Download gff for BS11609.complete
Subject Subject Range Query Range Percent Splice Strand
CG17737-RA 1..333 17..349 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:02 Download gff for BS11609.complete
Subject Subject Range Query Range Percent Splice Strand
CG17737-RA 140..488 5..357 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:02 Download gff for BS11609.complete
Subject Subject Range Query Range Percent Splice Strand
CG17737-RA 159..489 17..347 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:02 Download gff for BS11609.complete
Subject Subject Range Query Range Percent Splice Strand
CG17737-RA 140..488 5..357 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:16 Download gff for BS11609.complete
Subject Subject Range Query Range Percent Splice Strand
CG17737-RA 159..489 17..347 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:25:16 Download gff for BS11609.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3223770..3223927 45..202 100 -> Plus
3L 3223499..3223526 17..44 100 -> Plus
3L 3224314..3224458 203..347 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:02 Download gff for BS11609.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3223499..3223526 17..44 100 -> Plus
arm_3L 3223770..3223927 45..202 100 -> Plus
arm_3L 3224314..3224458 203..347 100   Plus

BS11609.pep Sequence

Translation from 16 to 348

> BS11609.pep
MSIQNLNTRDPFADAIKGNDDDIQDGLVHIRIQQRNGRKTLTTVQGLSAE
YDLKKIVRSCKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKVGLA
KPDQLKVHGF*

BS11609.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG17737-PA 110 CG17737-PA 1..110 1..110 581 100 Plus