BS11610.complete Sequence
1946 bp assembled on 2009-12-07
GenBank Submission: KX801172
> BS11610.complete
GAAGTTATCAGTCGACATGTTGGCACAAACGCAAATTATCCCAACGCCTT
GGCGACTTTTGACCCTGGCTTTATTCTGCTCAGCTTTATTTTTGGCCAGT
GAGGCTCAAAATGCCATCCCAAAAACGAATCCTGCCTCGCTGCTGATACA
GAAGACATCCTTCTCCTGCGCCGGACGTCCAGCCGGATATTATGCGGATG
TGGAGACGGGCTGCCAGGTGTACCACATGTGCGATGGCCTGGGTCGCCAG
TTCAGCTACACCTGCCCAAACACGACACTTTTCCAGCAGCGAATGCTTAT
CTGCGACCACTGGTACATGGTGAACTGCTCCAAGGCGGAGAGCAACTATG
CTGCCAATCTCCTAATTGGTCAGCGGGACAAGCCCTTCGTAAACGACGAG
GAAAACAGCTTGCGCACTCCAAGACCCGATCTTCTGGATCGTCCTTATGC
GCCCGACTATTCCGGCGAGTCCTTCAGAAGCCAATATAAGCAGTTTACTT
CCAACCAGAATCAGATACGTGATGAGTCCGTCAAAGGAGCCGGTGCGGGT
AAATCGGATCCCCAGATATCGCAGACGCGTTGGCGCATTCCACCACCCAG
CCGGACGATCCTTCCACCGGCCTATGAACCGCAAATCGAGCTGCCCAGTG
CCCAATCGGCCAAGCCCAGGATACCCATTATCACTAGCACCACCACAACC
ACTCGAGCGACCACCACCACCCGACCAACAACCACAACTCGTGCCACCAC
CACAACAACAACCACTCGAAGACCTCCGGTAACCGCCAGGCCGAAGGAGG
CCTTGCACAACAGGCGGCCAAATTTCCAGGAGCATGATATGGATGACTTG
GGCACCAGCCACAGCACACGGTACAACACCTCGGCAGACTTCAACTCGGC
GGAGTCGCCGCTCCGTGAAACGAAACAGTCCAGCACCAAGCTGACCAAGT
TCATCAAGCCGCCGTCCAAGATCTATGAGCCACCCTTTGTGTACCCCATC
TACAATCTAGAAGAGTCCCAGACCCAGAACGCGGCAGTCGCCACCACACT
GCGCACATCAACGGCGGCTCCTTTCAGTCCTGTTCCAAGTCGCAAGGAGG
TCAGCACCACAACTCCACGACCACTGAGTCGACCGACGACCTTGGCCGGT
GTACCCTTCTCCTCTGCCACACACCCAACTACGGTTACGACGGTCGGAGT
ACCGCCACGCAGCGATAATCGGACTCCAGCTCCGGCCCAGAGCTTCCGCC
TGGCCACGCCCACCAGCACTGCAGCACCACCATCGCGCCCGGCACAGTTG
CCCTTCAACGATTTACTGCCGCCGTTCGTTGACTTTGTGCCCCACGATAT
AGCCACCACCCAAGGACCGCCTATCTATTACGAATGGAAGGTGCCCTCGA
ACGGTCTTGAGCCTCCCAAATTAGACCCACCCATTGGTGTGGATGGACGT
GAGTATCCCGAGACCACTGGAGACTACGGGGTCACCAGCAAGCAGGATGT
ATTCAACACCCGACTAAACGATATTGGAAGCCATCAAAAGAAGCCAGTCC
AGATAACCTCGCCGCTCCAACAGTCGAGCACAAGCCATCGTTTGGCCATC
TCGAGATCCATTAAGCCCAAAGAGGAGCAGGAATCGGCACAGCGGCGATC
CGATGTGGTGGCCAGCTCCACGGATATAAGCCATCTGCGCAAGCAATTCC
TCATTCCGGAGTACGCCTTCCCGCTGGAAACCATTGGGCGCACGGGTTAT
GGTCCTGGTGCAGGAGCAGCGGCTGGGGGCTCCGGCTCCAGCAACGGCGA
TCTGTATAACTCGTTCCAGCTGAAGATCCCCGAGCAGCGCGCTAAGTGGT
TCGGAGAGAACCCCAAGTGCCCGGAGTGCCATCCTTCGTTCGTTCTGCCG
GGCACCTGCGAGCCCTGCCTGCGCAGATAGAAGCTTTCTAGACCAT
BS11610.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:09:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14880-RA | 1914 | CG14880-PA | 1..1914 | 17..1930 | 9570 | 100 | Plus |
| CG14880-RB | 1914 | CG14880-PB | 1..1914 | 17..1930 | 9570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:09:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14880-RA | 2591 | CG14880-RA | 505..2424 | 11..1930 | 9585 | 99.9 | Plus |
| CG14880-RB | 2599 | CG14880-RB | 513..2432 | 11..1930 | 9585 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:09:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16360496..16361937 | 1930..489 | 7210 | 100 | Minus |
| 3R | 32079331 | 3R | 16362179..16362447 | 370..102 | 1345 | 100 | Minus |
| 3R | 32079331 | 3R | 16362002..16362124 | 490..368 | 615 | 100 | Minus |
| 3R | 32079331 | 3R | 16365516..16365609 | 104..11 | 455 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:09:23 has no hits.
BS11610.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:16 Download gff for
BS11610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14880-RA | 514..2422 | 22..1930 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:07:21 Download gff for
BS11610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14880-RB | 524..2432 | 22..1930 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:01:17 Download gff for
BS11610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14880-RA | 514..2422 | 22..1930 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:10 Download gff for
BS11610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14880-RB | 524..2432 | 22..1930 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:10 Download gff for
BS11610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16360496..16361935 | 491..1930 | 100 | <- | Minus |
| 3R | 16362002..16362123 | 369..490 | 100 | <- | Minus |
| 3R | 16362181..16362445 | 104..368 | 100 | <- | Minus |
| 3R | 16365517..16365598 | 22..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:07:21 Download gff for
BS11610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12186218..12187657 | 491..1930 | 100 | <- | Minus |
| arm_3R | 12187724..12187845 | 369..490 | 100 | <- | Minus |
| arm_3R | 12187903..12188167 | 104..368 | 100 | <- | Minus |
| arm_3R | 12191239..12191320 | 22..103 | 100 | | Minus |
BS11610.pep Sequence
Translation from 16 to 1929
> BS11610.pep
MLAQTQIIPTPWRLLTLALFCSALFLASEAQNAIPKTNPASLLIQKTSFS
CAGRPAGYYADVETGCQVYHMCDGLGRQFSYTCPNTTLFQQRMLICDHWY
MVNCSKAESNYAANLLIGQRDKPFVNDEENSLRTPRPDLLDRPYAPDYSG
ESFRSQYKQFTSNQNQIRDESVKGAGAGKSDPQISQTRWRIPPPSRTILP
PAYEPQIELPSAQSAKPRIPIITSTTTTTRATTTTRPTTTTRATTTTTTT
RRPPVTARPKEALHNRRPNFQEHDMDDLGTSHSTRYNTSADFNSAESPLR
ETKQSSTKLTKFIKPPSKIYEPPFVYPIYNLEESQTQNAAVATTLRTSTA
APFSPVPSRKEVSTTTPRPLSRPTTLAGVPFSSATHPTTVTTVGVPPRSD
NRTPAPAQSFRLATPTSTAAPPSRPAQLPFNDLLPPFVDFVPHDIATTQG
PPIYYEWKVPSNGLEPPKLDPPIGVDGREYPETTGDYGVTSKQDVFNTRL
NDIGSHQKKPVQITSPLQQSSTSHRLAISRSIKPKEEQESAQRRSDVVAS
STDISHLRKQFLIPEYAFPLETIGRTGYGPGAGAAAGGSGSSNGDLYNSF
QLKIPEQRAKWFGENPKCPECHPSFVLPGTCEPCLRR*
BS11610.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:09:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14880-PA | 637 | CG14880-PA | 1..637 | 1..637 | 3381 | 100 | Plus |
| CG14880-PB | 637 | CG14880-PB | 1..637 | 1..637 | 3381 | 100 | Plus |
| CG13643-PC | 807 | CG13643-PC | 51..427 | 46..419 | 215 | 27.5 | Plus |
| CG13643-PB | 807 | CG13643-PB | 51..427 | 46..419 | 215 | 27.5 | Plus |
| CG13675-PC | 151 | CG13675-PC | 69..135 | 48..114 | 199 | 50.7 | Plus |
