BS11611.complete Sequence
1397 bp assembled on 2006-11-01
GenBank Submission: FJ636917
> BS11611.complete
GAAGTTATCAGTCGACATGGTGCTGGCCACGCCCCCTGTGAGCAAGGGCG
GTAACGCGGGCGGCCTCTTCATGGACCAGTATCAGCAGTACGCGGCCCAC
TGTGAAACCGCCGACAGTGGCAATGGCAGTGACCTGGAGAGCACCGGATT
GCCCACCAAACCGGATGACAGCGAGGAGAGTGGCCCCTCCTCGCTGGGCA
GCGACTCCATGCACGGGAGCAGCACGGAGTACGTGCGACAGTCCGCCTCC
CAGCCCAGTGGCCAGCGGCAGCGACAGAAGTCCTTGCGGGTCCTGGGTGC
CCTGCTCCCCGACAGCCTGCTCCGCGACATACGGGACCGGAGGAGCACCG
AGTATGTGGTACAGTTCTCGCAGCCAGAGGATGAGGAGAAGATCCAGGTC
CCCGACAAGATTCCGGAGAAACCCAGTCCGTTCCGCCTGGCCCGCGAATC
GCTGAGCGAGGACAAAATAGAGGAGCTGCGGGCCGCAGTGGAGCGGGCCA
ACTTCGTTCAAACCGGTGAGGAGACGCTGGACAGCATCGATGCCACATCG
CAGTCTCTTCCAGCCAGCAGCAACATCGGCGGACACCGCGGCAATATCAA
TTACAAGTATGCTGACGACCAATACTACAGCTTTCACATCAACGAGCACG
AGAACTTCGGTGCGAGAAGCGCGAGAAGTGGCGACGAGGCGGACCACTCC
ACGGGAGCGGGATCGGAGGCTGGCTCCGACAGCGGGATCCTAACGGAGCA
GCAAGACCTCTTCGCCGGCTATCGGGACGTGCGATGTGGGGCCAGTTCCA
CCCAGTCCACTATCCGATCGGCCAAGGGAACGGTGCGGGGCGTCAAGAAC
CGTGTGCGCAATGGAATAGCCACGTTCTTGCAGCTCCAGCAGCAGCCCAA
TGCCAAGAACTTCAAGGAGAAAGACCTGGGCAAGGTGGTGCTGTACACCA
CCAGCATGGGCATCATCCGGGAAACCTACACGAAGTGTGCCAACGTCAAG
CAGATCCTGCGCACCCTGCTGGTCAAGTTTGAGGAGCGGGACGTCTTCAT
GAGCGTGGAGTACCAGGCGGAGATGCGCCAGCGGATGCAGAGCGGTCAGG
TGCGGGTGCCACAGCTGTACGTCGAGGGCCAGCACATCGGGGACGCCGAG
ACCGTGGAGCGGATGAACGAGTCCGGCGAGCTGAGGCAGCTGCTCAAACC
GTACAAGTCCATGGCCAGCACCTACACCTGCCAGACCTGCGGCGGCTACC
GCCTGCTGCCCTGCCCCTCCTGCAACGGGTCCAAGAAGTCCGTGCACCGC
AACCACTTCACTGCCGAGTTCGTGGCCCTCAAGTGCATGAACTGCGACGA
GGTGGGCCTGGTCAAGTGCCACAATTGCTGAAAGCTTTCTAGACCAT
BS11611.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:18:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31559-RA | 1365 | CG31559-PA | 1..1365 | 17..1381 | 6825 | 100 | Plus |
| CG12206-RC | 1749 | CG12206-PC | 1188..1749 | 817..1381 | 990 | 78.8 | Plus |
| CG12206-RB | 1749 | CG12206-PB | 1188..1749 | 817..1381 | 990 | 78.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31559-RA | 2003 | CG31559-RA | 180..1544 | 17..1381 | 6825 | 100 | Plus |
| CG12206-RC | 2348 | CG12206-RC | 1490..2051 | 817..1381 | 990 | 78.8 | Plus |
| CG12206-RB | 2653 | CG12206-RB | 1795..2356 | 817..1381 | 990 | 78.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6156166..6157056 | 907..17 | 4455 | 100 | Minus |
| 3R | 32079331 | 3R | 6150575..6151050 | 1381..906 | 2380 | 100 | Minus |
| X | 23542271 | X | 3466398..3466634 | 1142..906 | 435 | 78.9 | Minus |
| X | 23542271 | X | 3466034..3466186 | 1381..1229 | 315 | 80.4 | Minus |
| X | 23542271 | X | 3471885..3471961 | 893..817 | 250 | 88.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:18:30 has no hits.
BS11611.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:46 Download gff for
BS11611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31559-RA | 1..1365 | 17..1381 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:24:45 Download gff for
BS11611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31559-RA | 161..1536 | 3..1381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:39:37 Download gff for
BS11611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31559-RA | 180..1543 | 17..1380 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:47 Download gff for
BS11611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31559-RA | 161..1536 | 3..1381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:44 Download gff for
BS11611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31559-RA | 180..1543 | 17..1380 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:44 Download gff for
BS11611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6150576..6151048 | 908..1380 | 100 | <- | Minus |
| 3R | 6156166..6157056 | 17..907 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:39:37 Download gff for
BS11611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1976298..1976770 | 908..1380 | 100 | <- | Minus |
| arm_3R | 1981888..1982778 | 17..907 | 100 | | Minus |
BS11611.pep Sequence
Translation from 16 to 1380
> BS11611.pep
MVLATPPVSKGGNAGGLFMDQYQQYAAHCETADSGNGSDLESTGLPTKPD
DSEESGPSSLGSDSMHGSSTEYVRQSASQPSGQRQRQKSLRVLGALLPDS
LLRDIRDRRSTEYVVQFSQPEDEEKIQVPDKIPEKPSPFRLARESLSEDK
IEELRAAVERANFVQTGEETLDSIDATSQSLPASSNIGGHRGNINYKYAD
DQYYSFHINEHENFGARSARSGDEADHSTGAGSEAGSDSGILTEQQDLFA
GYRDVRCGASSTQSTIRSAKGTVRGVKNRVRNGIATFLQLQQQPNAKNFK
EKDLGKVVLYTTSMGIIRETYTKCANVKQILRTLLVKFEERDVFMSVEYQ
AEMRQRMQSGQVRVPQLYVEGQHIGDAETVERMNESGELRQLLKPYKSMA
STYTCQTCGGYRLLPCPSCNGSKKSVHRNHFTAEFVALKCMNCDEVGLVK
CHNC*
BS11611.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31559-PA | 454 | CG31559-PA | 1..454 | 1..454 | 2353 | 100 | Plus |
| CG12206-PC | 582 | CG12206-PC | 208..582 | 19..454 | 950 | 48.3 | Plus |
| CG12206-PB | 582 | CG12206-PB | 208..582 | 19..454 | 950 | 48.3 | Plus |
| CG12206-PA | 582 | CG12206-PA | 208..582 | 19..454 | 950 | 48.3 | Plus |
