BS11612.complete Sequence
2240 bp assembled on 2009-12-07
GenBank Submission: KX802121
> BS11612.complete
GAAGTTATCAGTCGACATGACTCTGCCCCGCTTAGAAACTCCGCTCAGGC
GGTCCGCAGTAGGCAGTTACCAGGAGGGGGTGTCCCGCATGCTAACCCCC
TTTAACGACGACGAGGCGGAAAGGCGGGAAGCCCGACGTCGCACGCTCCT
TCAGCAGCATCACCGGTCGAGCACTCTGGAGTCCATCGAGGACAATGAGA
CCATCAAAAATTGCTTGGAGCTCTACAATGGCAACAAGGTGAGCAAGGAC
AACGCCTGGAACCTGATGCTCATCGATTCGTTGGCCAATTTGCTGGATCA
CCATCACAAGCGCATGAGCAACTTCAAGATGGCTGGTTCCTCTTTAGAAG
CCTCTTCCAAGGTTTACGGCCTGCGTGTGGACTCCATCTACTTGGACGCC
ATGCGCATTTCAGCTGGCTTGAGTGCACGAACTCTTACGGATAAGCAAAT
AAATGCTGCCGAGGATGATGATGGCCCCCAAGGTGAACAGGCTACTGGCG
AGGGTCAGGACTCAGCGCAACAGGCAGCAAAAGAAGCAGCACCGAAGCCC
AAACGGCAAAAGAAACCCATATCCACCGTGACCAAAAACAGAGAAACGCT
GAACAGCCGGCTGGATACGGCTCCCTTGCAGGATCCTGTGTTTGGCAAGC
TGAACTCCACTGTGGGCTCTATAAATGCTTCCAATCGTCTGATGCACAAC
ATTCTTCCTAGTTTCGACTCTGAATTGCGCTTGCGTACCACCTACAATTT
TTGGAACAGCGAAGAGTCCACCGAGGAGGTCCAGGACCACACTACACTCA
ATGCAGAAATGGAACAATGGCCAGCCACATCACTTATGAGCACCAATCTT
ATGCGCAAACTGCTGCCACATGCTGAAAGGTCAAATCTGCGACCGCTGCA
TACGGGCTACATCATCACAAGTGCTCCCAATCCCAAGTCGGCAAATGAAA
AGGCCGCCGAGGTAGTGCAGGATGAAGATCATGACGAGGGTCTGGATAAT
GCCGACGATATGTGTGTAAATGAGATTTCCATGGCCTTTGACATCAATGC
CGAGTGTGAGCCCATGCCGGACCTGGATGGACCACCGCCTCTGGTGCTGG
AGGTGGACTCCAATGAGCTGGAAGAGCTCACTGCCGAGGAGCAAATGGTG
ATCAATAATTGCCGTCGGCTACGTAAGCAGACAGAGTTCATCGAGGATTT
GCGACCGGTAGACGGGAATTCCAAGCTAGAGTACTCCTACAGGCCGATGG
ACCAGATCTCCCAGTTTTGGGCCGGCCCCTCGCATTGGAAGTTTAAGCGG
ACTCGCCCGCGCAGCACTTTCTCGCAGACCAATGGACAGGTGGACACTCA
GCCTATTCGCACTCAACGAGCGAAGAAGTCAGCGCATCTGAATGCCAACC
GAAGAGCCAAGGCTTTGGACTATGGCAATGTGACGGAAAACTTCTTCCAA
CAGCTGGACACCACCATAAGGCAGCGCAAGGCGAATTTCCAAAAGAAGTG
GGATCCCCGAAAGCTGATATTGCCCACCAAGTTCGAATTGGACCCGGATC
TTTTCTTCAAGTACGAATCCGCTCCCAGCATAAAGTTGTCGAAACGCGCA
GGTGAACCTGATTCGGATGAGGGTGGAGATCTTGGCATCGATATGGATGC
GGATATGCACCACGATGATGACAATGACCAGGAGCTATTCAACAACGAGC
ATTTTACCGACGCCGTTCCCGCCAACGTGAGCGTTATTGCCGCGATTGCT
GCGGAGCAAGCGGCCGAGGCAAGCATGATGAACGTGTCCGCGGGTGAGAT
TGGCCTCACCCAGATGAACGCCACTTGCAACAACACAGTCTTCGAGATCG
GCACCGAGTTCGAGGGTGCGCCGTCGCAGGTTGCCAAAGTGATTGTTCCA
TTCGCGAAGAGAGCCAAGGTTATAGACATGAAGAATCTGAAAAAGTCCTG
CAACTCTCTAATACAGAAACAATTGCTAAACGCTGTGCCGGAGGAGACGA
TACCCTCGCATCCCAAGAAAAAGGGCGAACACTATTCAAAGGGTTTCGCG
AGTTTTCAGCAGGTGTATCAGAAGCTGCCCGACCTTTTGACCACCAAAAT
GTCAGACTCGCTGTCCCCGTCGGTGGCATTCTATGCGGTTCTGCATTTGG
CCAACGATTTGAAACTGCGGCTAATTCCGCAGGAGGACTTGGAGGACTTT
CAAATTCGCCAGGTGTTGGATTGAAAGCTTTCTAGACCAT
BS11612.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:21:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| barr-RC | 2208 | CG10726-PC | 1..2208 | 17..2224 | 11040 | 100 | Plus |
| barr-RB | 2208 | CG10726-PB | 1..2208 | 17..2224 | 11040 | 100 | Plus |
| barr-RA | 2208 | CG10726-PA | 1..2208 | 17..2224 | 11040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:21:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| barr-RC | 2908 | CG10726-RC | 479..2687 | 17..2225 | 11045 | 100 | Plus |
| barr-RB | 2684 | CG10726-RB | 255..2463 | 17..2225 | 11045 | 100 | Plus |
| barr-RA | 2580 | CG10726-RA | 151..2359 | 17..2225 | 11045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:21:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20058800..20060354 | 1881..327 | 7775 | 100 | Minus |
| 2L | 23513712 | 2L | 20058384..20058733 | 2225..1876 | 1750 | 100 | Minus |
| 2L | 23513712 | 2L | 20060408..20060723 | 332..17 | 1565 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:21:17 has no hits.
BS11612.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:43 Download gff for
BS11612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| barr-RB | 253..2459 | 17..2223 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:12:12 Download gff for
BS11612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| barr-RA | 151..2357 | 17..2223 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:08:01 Download gff for
BS11612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| barr-RB | 253..2459 | 17..2223 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:39 Download gff for
BS11612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| barr-RA | 151..2357 | 17..2223 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:39 Download gff for
BS11612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20058386..20058729 | 1880..2223 | 100 | <- | Minus |
| 2L | 20058802..20060352 | 329..1879 | 100 | <- | Minus |
| 2L | 20060412..20060723 | 17..328 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:12:12 Download gff for
BS11612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20058386..20058729 | 1880..2223 | 100 | <- | Minus |
| arm_2L | 20058802..20060352 | 329..1879 | 100 | <- | Minus |
| arm_2L | 20060412..20060723 | 17..328 | 100 | | Minus |
BS11612.pep Sequence
Translation from 16 to 2223
> BS11612.pep
MTLPRLETPLRRSAVGSYQEGVSRMLTPFNDDEAERREARRRTLLQQHHR
SSTLESIEDNETIKNCLELYNGNKVSKDNAWNLMLIDSLANLLDHHHKRM
SNFKMAGSSLEASSKVYGLRVDSIYLDAMRISAGLSARTLTDKQINAAED
DDGPQGEQATGEGQDSAQQAAKEAAPKPKRQKKPISTVTKNRETLNSRLD
TAPLQDPVFGKLNSTVGSINASNRLMHNILPSFDSELRLRTTYNFWNSEE
STEEVQDHTTLNAEMEQWPATSLMSTNLMRKLLPHAERSNLRPLHTGYII
TSAPNPKSANEKAAEVVQDEDHDEGLDNADDMCVNEISMAFDINAECEPM
PDLDGPPPLVLEVDSNELEELTAEEQMVINNCRRLRKQTEFIEDLRPVDG
NSKLEYSYRPMDQISQFWAGPSHWKFKRTRPRSTFSQTNGQVDTQPIRTQ
RAKKSAHLNANRRAKALDYGNVTENFFQQLDTTIRQRKANFQKKWDPRKL
ILPTKFELDPDLFFKYESAPSIKLSKRAGEPDSDEGGDLGIDMDADMHHD
DDNDQELFNNEHFTDAVPANVSVIAAIAAEQAAEASMMNVSAGEIGLTQM
NATCNNTVFEIGTEFEGAPSQVAKVIVPFAKRAKVIDMKNLKKSCNSLIQ
KQLLNAVPEETIPSHPKKKGEHYSKGFASFQQVYQKLPDLLTTKMSDSLS
PSVAFYAVLHLANDLKLRLIPQEDLEDFQIRQVLD*
BS11612.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:56:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| barr-PC | 735 | CG10726-PC | 1..735 | 1..735 | 3799 | 100 | Plus |
| barr-PB | 735 | CG10726-PB | 1..735 | 1..735 | 3799 | 100 | Plus |
| barr-PA | 735 | CG10726-PA | 1..735 | 1..735 | 3799 | 100 | Plus |
