BS11616.complete Sequence
1415 bp assembled on 2006-11-01
GenBank Submission: FJ636918
> BS11616.complete
GAAGTTATCAGTCGACATGTTATTCTTGAGACGATTTTACAGCAAATCCG
GACGGATAGCTCAAATATTAAAGACTAATAAGCCAGGCGACTCTTTGGCC
ATACAGGGATGGATCAAAAACGTTCGCCGGTTGAAGAACAACACATTTCT
GGACATCAATGATGGTTCCACGAGCAGTAGGTTCCAGGTGGTCGTGCCCC
GGACTCCGGAAAACCAGCACTTGGCTCCGGGAAGCGTCATTGCAGCTGTC
GGTAAAATTCAAGTGGCTCCAAATGGCAGCTTCGAGTTGCATGCGAATCA
GGTGGAAATGTTGGCTGAAGGACGGCTGCAGGAGGGTTATCCCTTCAGTC
CCAAACAGAAACATCCACCGGAATATGTACGTGAGCATCTACATCTTCGA
TCACGCGTAGATTTCGTTGCCGCCCAGATGAGGGTCAGACACAAAGCACA
AAAAGCTATACACGACTACATGGATGATCAGGATTTCGTGCAGATCAACA
CTCCTCTGCTCACAACCAACGATTGCGAGGGAGCAGGAGAAGTGTTTCGG
GTACAACCGGACTCCCAAGACCTGCTCAAGCAGATGAACCGACCAAATAT
TCCCATGGAACAAAGCTACTTTGATAGCAAAGTATTCCTCAGCGTCTCTG
GTCAACTGCACCTGGAGGCCATGACATACGGTTTAGGCAAGACATACACT
CTCTCACCAGCCTTCCGAGCGGAGAACTCCAAGTCTCCGTTGCATTTAGC
AGAGTTCTATATGTTTGAAGCGGAACTTGCCCATTTGGAGGAGATGGAGA
AGTTAGCGCAGTTCATTGAACAGATGCTGAAATCTGTGACAAACCGTTTG
CTGGAAACGAGTGGCGAGGACCTAAGTTTCTGTCAACGGAATTCAAACTC
TAACTCCGATCTCCCTTGGCTGCAAGTACCGTGGAAGATAATGAGCTACG
ATGAAGCCCTGCAAGTACTGCAGGAAAACAAGGACAGTCTTAAGACTCCT
ATTAGCCTGAACGAAGGATTCTCCAAGGACCAAGAACTTTTTTTAGTGGC
CCATTGTGGTGCTCCCGTATTCGTTGTGGATTGGCCAGCTCAGCAGAAAC
CTTTTTACATGAAAGTCTCGCGTTCAAATCCCAATCGAGTTCATGCCCTA
GACCTACTGATGCCAGCTGTTGGAGAATTATGCGGCGGGAGCCTGCGTGA
AAGCGATCCTGCTATATTAAAATCCCATCCGCATCTGCCGAAGGATCTGG
AATGGTACGTTGACTTGCGAAAGTATGGAGGAGTTCCAACTGGAGGATTT
GGAATGGGCTTTGAGCGTTACTTGCAGCTTGTCACGGGCGTTAAAAACAT
TCGTGATGTGATACCCTTCCCCAGGTATCCACACAGCTGCAAGATGTGAA
AGCTTTCTAGACCAT
BS11616.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:02:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6796-RA | 1383 | CG6796-PA | 1..1383 | 17..1399 | 6915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:02:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6796-RA | 1482 | CG6796-RA | 39..1421 | 17..1399 | 6915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:02:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17002453..17003538 | 314..1399 | 5430 | 100 | Plus |
| 2R | 25286936 | 2R | 17002181..17002390 | 105..314 | 1050 | 100 | Plus |
| 2R | 25286936 | 2R | 17002032..17002122 | 17..107 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:02:04 has no hits.
BS11616.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:49 Download gff for
BS11616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6796-RA | 1..1383 | 17..1399 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:24:49 Download gff for
BS11616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6796-RA | 19..1401 | 17..1399 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:07:28 Download gff for
BS11616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6796-RA | 44..1420 | 22..1398 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:49 Download gff for
BS11616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6796-RA | 19..1401 | 17..1399 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:09:41 Download gff for
BS11616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6796-RA | 44..1420 | 22..1398 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:09:41 Download gff for
BS11616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17002037..17002121 | 22..106 | 100 | -> | Plus |
| 2R | 17002183..17002390 | 107..314 | 100 | -> | Plus |
| 2R | 17002454..17003537 | 315..1398 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:07:28 Download gff for
BS11616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12889542..12889626 | 22..106 | 100 | -> | Plus |
| arm_2R | 12889688..12889895 | 107..314 | 100 | -> | Plus |
| arm_2R | 12889959..12891042 | 315..1398 | 100 | | Plus |
BS11616.pep Sequence
Translation from 16 to 1398
> BS11616.pep
MLFLRRFYSKSGRIAQILKTNKPGDSLAIQGWIKNVRRLKNNTFLDINDG
STSSRFQVVVPRTPENQHLAPGSVIAAVGKIQVAPNGSFELHANQVEMLA
EGRLQEGYPFSPKQKHPPEYVREHLHLRSRVDFVAAQMRVRHKAQKAIHD
YMDDQDFVQINTPLLTTNDCEGAGEVFRVQPDSQDLLKQMNRPNIPMEQS
YFDSKVFLSVSGQLHLEAMTYGLGKTYTLSPAFRAENSKSPLHLAEFYMF
EAELAHLEEMEKLAQFIEQMLKSVTNRLLETSGEDLSFCQRNSNSNSDLP
WLQVPWKIMSYDEALQVLQENKDSLKTPISLNEGFSKDQELFLVAHCGAP
VFVVDWPAQQKPFYMKVSRSNPNRVHALDLLMPAVGELCGGSLRESDPAI
LKSHPHLPKDLEWYVDLRKYGGVPTGGFGMGFERYLQLVTGVKNIRDVIP
FPRYPHSCKM*
BS11616.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6796-PA | 460 | CG6796-PA | 1..460 | 1..460 | 2420 | 100 | Plus |
| Aats-asn-PB | 558 | CG10687-PB | 140..557 | 29..459 | 373 | 25.9 | Plus |
| Aats-asn-PA | 558 | CG10687-PA | 140..557 | 29..459 | 373 | 25.9 | Plus |
| Aats-asp-PB | 531 | CG3821-PB | 150..526 | 75..455 | 235 | 24.8 | Plus |
| Aats-asp-PC | 531 | CG3821-PC | 150..526 | 75..455 | 235 | 24.8 | Plus |
