Clone Sequence Records
BS11621.3prime Sequence
687 bp (687 high quality bases) assembled on 2006-06-16
> BS11621.3prime
ATGGTCTAGAAAGCTTCTAGCAGAGCGTTCCGGGCAGCTGACTGAAGCTC
TGGCAAAGCAAGGCGTGCAGAAGATCATCGTCCACCCGATCCTGGGTGTT
GGCCCAGAAGAAGGTGCCATTGTCCGTGCTGATGTATTGGAGGGGCAACT
GCAGATCCCAGAGATTACTGGGCAACTGTGTTGCACTGCTGCTGTTCATA
TTGCTGCTGCTGCTGCTACTGTTGATGTTGCTGCTGCTGTGATGTCGATG
CTGGCAGTTGCGTCCGTGTTGGCAGTTGCCGCAGCTCTGGGCGCTGACCT
TGTCCACATGCACGCTGCTAATCAATGTGGGTGTGTTGGGCGGCTGGGTG
AGGGACACCTGCTCCTCCTCGGGCAATTGCCTCAGCTCCAGACCGTACTT
GTGGATAGACTCCTCTGGCGTTGACTTGGTGTCATCTTCAATGAGCAACT
CCTGCTGCTGCTGCTGTTGCTGCTGCTGTGTGTTGTTGAGATCCACGTTG
TTGGGATGGGCCAAGGTCGCCTGTGCGGTGCGACCTTTGCCACCCACTTT
CAGTAGGCGACTCAGCGGTTTCCACACGTTACGCATGCGCCGTGTTGACT
TTGAGTTCGATGCTGTGGCCGCTGTCAGTGCTGAAGTGCTGCTGGCTGTC
AGGTTTTTCGTATCCAGATACATGTCGACTGATAACT
BS11621.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:55:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6104-PA | 657 | m2-RA | 1..657 | 673..17 | 3260 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:28:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)m2-BFM-RA | 957 | CG6104-RA | 107..765 | 675..17 | 3280 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:28:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26016706..26017364 | 17..675 | 3280 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:28:55 has no hits.
BS11621.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:36 Download gff for
BS11621.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6104-PA | 1..657 | 17..673 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:37:28 Download gff for
BS11621.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)m2-BFM-RA | 102..765 | 17..681 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:45:53 Download gff for
BS11621.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)m2-BFM-RA | 102..765 | 17..681 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:45:53 Download gff for
BS11621.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26016706..26017369 | 17..681 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:37:28 Download gff for
BS11621.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21842428..21843091 | 17..681 | 99 | | Plus |
BS11621.complete Sequence
689 bp assembled on 2009-02-12
GenBank Submission: KX800265
> BS11621.complete
GAAGTTATCAGTCGACATGTATCTGGATACGAAAAACCTGACAGCCAGCA
GCACTTCAGCACTGACAGCGGCCACAGCATCGAACTCAAAGTCAACACGG
CGCATGCGTAACGTGTGGAAACCGCTGAGTCGCCTACTGAAAGTGGGTGG
CAAAGGTCGCACCGCACAGGCGACCTTGGCCCATCCCAACAACGTGGATC
TCAACAACACACAGCAGCAGCAACAGCAGCAGCAGCAGGAGTTGCTCATT
GAAGATGACACCAAGTCAACGCCAGAGGAGTCTATCCACAAGTACGGTCT
GGAGCTGAGGCAATTGCCCGAGGAGGAGCAGGTGTCCCTCACCCAGCCGC
CCAACACACCCACATTGATTAGCAGCGTGCATGTGGACAAGGTCAGCGCC
CAGAGCTGCGGCAACTGCCAACACGGACGCAACTGCCAGCATCGACATCA
CAGCAGCAGCAACATCAACAGTAGCAGCAGCAGCAGCAATATGAACAGCA
GCAGTGCAACACAGTTGCCCAGTAATCTCTGGGATCTGCAGTTGCCCCTC
CAATACATCAGCACGGACAATGGCACCTTCTTCTGGGCCAACACCCAGGA
TCGGGTGGACGATGATCTTCTGCACGCCTTGCTTTGCCAGAGCTTCAGTC
AGCTGCCCGGAACGCTCTGCTAGAAGCTTTCTAGACCAT
BS11621.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:42:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)m2-BFM-RA | 657 | CG6104-PA | 1..657 | 17..673 | 3270 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:42:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)m2-BFM-RA | 957 | CG6104-RA | 107..765 | 15..673 | 3280 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:42:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26016706..26017364 | 673..15 | 3280 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:42:30 has no hits.
BS11621.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:20 Download gff for
BS11621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
m2-RA | 109..765 | 17..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:35:57 Download gff for
BS11621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)m2-BFM-RA | 109..765 | 17..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:38 Download gff for
BS11621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)m2-BFM-RA | 109..765 | 17..673 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:38 Download gff for
BS11621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26016706..26017362 | 17..673 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:35:57 Download gff for
BS11621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21842428..21843084 | 17..673 | 99 | | Minus |
BS11621.pep Sequence
Translation from 16 to 672
> BS11621.pep
MYLDTKNLTASSTSALTAATASNSKSTRRMRNVWKPLSRLLKVGGKGRTA
QATLAHPNNVDLNNTQQQQQQQQQELLIEDDTKSTPEESIHKYGLELRQL
PEEEQVSLTQPPNTPTLISSVHVDKVSAQSCGNCQHGRNCQHRHHSSSNI
NSSSSSSNMNSSSATQLPSNLWDLQLPLQYISTDNGTFFWANTQDRVDDD
LLHALLCQSFSQLPGTLC*
BS11621.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:11:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)m2-BFM-PA | 218 | CG6104-PA | 1..218 | 1..218 | 1136 | 100 | Plus |