Clone BS11621 Report

Search the DGRC for BS11621

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:116
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptE(spl)m2-BFM-RA
Protein status:BS11621.pep: full length peptide match
Sequenced Size:689

Clone Sequence Records

BS11621.3prime Sequence

687 bp (687 high quality bases) assembled on 2006-06-16

> BS11621.3prime
ATGGTCTAGAAAGCTTCTAGCAGAGCGTTCCGGGCAGCTGACTGAAGCTC
TGGCAAAGCAAGGCGTGCAGAAGATCATCGTCCACCCGATCCTGGGTGTT
GGCCCAGAAGAAGGTGCCATTGTCCGTGCTGATGTATTGGAGGGGCAACT
GCAGATCCCAGAGATTACTGGGCAACTGTGTTGCACTGCTGCTGTTCATA
TTGCTGCTGCTGCTGCTACTGTTGATGTTGCTGCTGCTGTGATGTCGATG
CTGGCAGTTGCGTCCGTGTTGGCAGTTGCCGCAGCTCTGGGCGCTGACCT
TGTCCACATGCACGCTGCTAATCAATGTGGGTGTGTTGGGCGGCTGGGTG
AGGGACACCTGCTCCTCCTCGGGCAATTGCCTCAGCTCCAGACCGTACTT
GTGGATAGACTCCTCTGGCGTTGACTTGGTGTCATCTTCAATGAGCAACT
CCTGCTGCTGCTGCTGTTGCTGCTGCTGTGTGTTGTTGAGATCCACGTTG
TTGGGATGGGCCAAGGTCGCCTGTGCGGTGCGACCTTTGCCACCCACTTT
CAGTAGGCGACTCAGCGGTTTCCACACGTTACGCATGCGCCGTGTTGACT
TTGAGTTCGATGCTGTGGCCGCTGTCAGTGCTGAAGTGCTGCTGGCTGTC
AGGTTTTTCGTATCCAGATACATGTCGACTGATAACT

BS11621.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG6104-PA 657 m2-RA 1..657 673..17 3260 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:28:57
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)m2-BFM-RA 957 CG6104-RA 107..765 675..17 3280 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:28:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26016706..26017364 17..675 3280 99.8 Plus
Blast to na_te.dros performed on 2015-02-12 11:28:55 has no hits.

BS11621.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:36 Download gff for BS11621.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6104-PA 1..657 17..673 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:37:28 Download gff for BS11621.3prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)m2-BFM-RA 102..765 17..681 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:45:53 Download gff for BS11621.3prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)m2-BFM-RA 102..765 17..681 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:45:53 Download gff for BS11621.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26016706..26017369 17..681 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:37:28 Download gff for BS11621.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21842428..21843091 17..681 99   Plus

BS11621.complete Sequence

689 bp assembled on 2009-02-12

GenBank Submission: KX800265

> BS11621.complete
GAAGTTATCAGTCGACATGTATCTGGATACGAAAAACCTGACAGCCAGCA
GCACTTCAGCACTGACAGCGGCCACAGCATCGAACTCAAAGTCAACACGG
CGCATGCGTAACGTGTGGAAACCGCTGAGTCGCCTACTGAAAGTGGGTGG
CAAAGGTCGCACCGCACAGGCGACCTTGGCCCATCCCAACAACGTGGATC
TCAACAACACACAGCAGCAGCAACAGCAGCAGCAGCAGGAGTTGCTCATT
GAAGATGACACCAAGTCAACGCCAGAGGAGTCTATCCACAAGTACGGTCT
GGAGCTGAGGCAATTGCCCGAGGAGGAGCAGGTGTCCCTCACCCAGCCGC
CCAACACACCCACATTGATTAGCAGCGTGCATGTGGACAAGGTCAGCGCC
CAGAGCTGCGGCAACTGCCAACACGGACGCAACTGCCAGCATCGACATCA
CAGCAGCAGCAACATCAACAGTAGCAGCAGCAGCAGCAATATGAACAGCA
GCAGTGCAACACAGTTGCCCAGTAATCTCTGGGATCTGCAGTTGCCCCTC
CAATACATCAGCACGGACAATGGCACCTTCTTCTGGGCCAACACCCAGGA
TCGGGTGGACGATGATCTTCTGCACGCCTTGCTTTGCCAGAGCTTCAGTC
AGCTGCCCGGAACGCTCTGCTAGAAGCTTTCTAGACCAT

BS11621.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:42:31
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)m2-BFM-RA 657 CG6104-PA 1..657 17..673 3270 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:42:32
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)m2-BFM-RA 957 CG6104-RA 107..765 15..673 3280 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:42:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26016706..26017364 673..15 3280 99.8 Minus
Blast to na_te.dros performed on 2014-11-27 23:42:30 has no hits.

BS11621.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:20 Download gff for BS11621.complete
Subject Subject Range Query Range Percent Splice Strand
m2-RA 109..765 17..673 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:35:57 Download gff for BS11621.complete
Subject Subject Range Query Range Percent Splice Strand
E(spl)m2-BFM-RA 109..765 17..673 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:38 Download gff for BS11621.complete
Subject Subject Range Query Range Percent Splice Strand
E(spl)m2-BFM-RA 109..765 17..673 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:38 Download gff for BS11621.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26016706..26017362 17..673 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:35:57 Download gff for BS11621.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21842428..21843084 17..673 99   Minus

BS11621.pep Sequence

Translation from 16 to 672

> BS11621.pep
MYLDTKNLTASSTSALTAATASNSKSTRRMRNVWKPLSRLLKVGGKGRTA
QATLAHPNNVDLNNTQQQQQQQQQELLIEDDTKSTPEESIHKYGLELRQL
PEEEQVSLTQPPNTPTLISSVHVDKVSAQSCGNCQHGRNCQHRHHSSSNI
NSSSSSSNMNSSSATQLPSNLWDLQLPLQYISTDNGTFFWANTQDRVDDD
LLHALLCQSFSQLPGTLC*

BS11621.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:11:06
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)m2-BFM-PA 218 CG6104-PA 1..218 1..218 1136 100 Plus