Clone Sequence Records
BS11624.complete Sequence
331 bp assembled on 2009-05-14
GenBank Submission: KX805647
> BS11624.complete
GAAGTTATCAGTCGACATGAAATTCCTGATCATTGCCATCGCCTTCTTGG
CCTGCGCATTCGCCGATGTCTCGGAGCTTTCTGGCTACGACTACCAGCAG
CCAGCTCCTGCTCCCGTGGAAACCTACATCCCACCTGCACCGCCAGCACC
TGCTCCCGTCGAGACCTACATCCCACCTGCACCACCAGCACCCGAGTACA
TCCCACCTGCTCCTGTCCAGGCCGAGGAACCCATCATCGAGGAGATCGAG
CAGCCCGCCCAGGACGGCTACCGCTACAAGACCGTCCGCCGCCACGTCTT
CCGTCACCGCAACTAAAGCTTTCTAGACCAT
BS11624.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:36:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17290-RC | 300 | CG17290-PC | 1..300 | 17..316 | 1500 | 100 | Plus |
CG17290-RA | 300 | CG17290-PA | 1..300 | 17..316 | 1500 | 100 | Plus |
CG30458-RA | 438 | CG30458-PA | 244..438 | 122..316 | 675 | 89.7 | Plus |
CG17290-RC | 300 | CG17290-PC | 84..134 | 142..192 | 195 | 92.2 | Plus |
CG17290-RC | 300 | CG17290-PC | 126..176 | 100..150 | 195 | 92.2 | Plus |
CG17290-RA | 300 | CG17290-PA | 126..176 | 100..150 | 195 | 92.2 | Plus |
CG17290-RA | 300 | CG17290-PA | 84..134 | 142..192 | 195 | 92.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:36:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17290-RC | 2443 | CG17290-RC | 153..453 | 16..316 | 1505 | 100 | Plus |
CG17290-RA | 440 | CG17290-RA | 45..345 | 16..316 | 1505 | 100 | Plus |
CG30458-RA | 614 | CG30458-RA | 300..494 | 122..316 | 675 | 89.7 | Plus |
CG17290-RC | 2443 | CG17290-RC | 237..287 | 142..192 | 195 | 92.2 | Plus |
CG17290-RC | 2443 | CG17290-RC | 279..329 | 100..150 | 195 | 92.2 | Plus |
CG17290-RA | 440 | CG17290-RA | 129..179 | 142..192 | 195 | 92.2 | Plus |
CG17290-RA | 440 | CG17290-RA | 171..221 | 100..150 | 195 | 92.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:36:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17154838..17155135 | 19..316 | 1490 | 100 | Plus |
2R | 25286936 | 2R | 17158445..17158639 | 316..122 | 675 | 89.7 | Minus |
2R | 25286936 | 2R | 17154919..17154969 | 142..192 | 195 | 92.2 | Plus |
2R | 25286936 | 2R | 17154961..17155011 | 100..150 | 195 | 92.2 | Plus |
2R | 25286936 | 2R | 17158822..17158880 | 77..19 | 190 | 88.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:36:09 has no hits.
BS11624.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-14 12:41:03 Download gff for
BS11624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17290-RA | 44..341 | 17..314 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:18:47 Download gff for
BS11624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17290-RA | 46..343 | 17..314 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:13:45 Download gff for
BS11624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17290-RA | 46..343 | 17..314 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:13:45 Download gff for
BS11624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17154837..17155133 | 17..314 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:18:47 Download gff for
BS11624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13042342..13042638 | 17..314 | 99 | | Plus |
BS11624.5prime Sequence
329 bp (329 high quality bases) assembled on 2006-06-16
> BS11624.5prime
GAAGTTATCAGTCGACATGAAATTCCTGATCATTGCCATCGCCTTCTTGG
CCTGCGCATTCGCCGATGTCTCGGAGCTTTCTGGCTACGACTACCAGCAG
CCAGCTCCTGCTCCCGTGGAAACCTACATCCCACCTGCACCGCCAGCACC
TGCTCCCGTCGAGACCTACATCCCACCTGCACCACCAGCACCCGAGTACA
TCCCACCTGCTCCTGTCCAGGCCGAGGAACCCATCATCGAGGAGATCGAG
CAGCCCGCCCAGGACGGCTACCGCTACAAGACCGTCCGCCGCCACGTCTT
CCGTCACCGCAACTAAAGCTTTCTAGACC
BS11624.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:55:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17290-PA | 300 | CG17290-RA | 1..300 | 17..316 | 1500 | 100 | Plus |
CG30458-PA | 438 | CG30458-RA | 319..438 | 197..316 | 475 | 95.8 | Plus |
CG30458-PA | 438 | CG30458-RA | 1..41 | 17..57 | 155 | 95.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:31:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17290-RC | 2443 | CG17290-RC | 153..453 | 16..316 | 1505 | 100 | Plus |
CG17290-RA | 440 | CG17290-RA | 45..345 | 16..316 | 1505 | 100 | Plus |
CG30458-RA | 614 | CG30458-RA | 300..494 | 122..316 | 675 | 89.7 | Plus |
CG17290-RC | 2443 | CG17290-RC | 237..287 | 142..192 | 195 | 92.2 | Plus |
CG17290-RC | 2443 | CG17290-RC | 279..329 | 100..150 | 195 | 92.2 | Plus |
CG17290-RA | 440 | CG17290-RA | 129..179 | 142..192 | 195 | 92.2 | Plus |
CG17290-RA | 440 | CG17290-RA | 171..221 | 100..150 | 195 | 92.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:31:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17154838..17155135 | 19..316 | 1490 | 100 | Plus |
2R | 25286936 | 2R | 17158445..17158639 | 316..122 | 675 | 89.7 | Minus |
2R | 25286936 | 2R | 17154919..17154969 | 142..192 | 195 | 92.2 | Plus |
2R | 25286936 | 2R | 17154961..17155011 | 100..150 | 195 | 92.2 | Plus |
2R | 25286936 | 2R | 17158822..17158880 | 77..19 | 190 | 88.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:31:56 has no hits.
BS11624.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:37 Download gff for
BS11624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17290-PA | 1..300 | 17..316 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:52:40 Download gff for
BS11624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17290-RA | 45..345 | 16..316 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:11:53 Download gff for
BS11624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17290-RA | 45..345 | 16..316 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:11:53 Download gff for
BS11624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17154836..17155135 | 16..316 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:52:40 Download gff for
BS11624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13042341..13042640 | 16..316 | 99 | | Plus |
BS11624.3prime Sequence
329 bp (329 high quality bases) assembled on 2006-06-16
> BS11624.3prime
ATGGTCTAGAAAGCTTTAGTTGCGGTGACGGAAGACGTGGCGGCGGACGG
TCTTGTAGCGGTAGCCGTCCTGGGCGGGCTGCTCGATCTCCTCGATGATG
GGTTCCTCGGCCTGGACAGGAGCAGGTGGGATGTACTCGGGTGCTGGTGG
TGCAGGTGGGATGTAGGTCTCGACGGGAGCAGGTGCTGGCGGTGCAGGTG
GGATGTAGGTTTCCACGGGAGCAGGAGCTGGCTGCTGGTAGTCGTAGCCA
GAAAGCTCCGAGACATCGGCGAATGCGCAGGCCAAGAAGGCGATGGCAAT
GATCAGGAATTTCATGTCGACTGATAACT
BS11624.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:55:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17290-PA | 300 | CG17290-RA | 1..300 | 315..16 | 1500 | 100 | Minus |
CG30458-PA | 438 | CG30458-RA | 319..438 | 135..16 | 475 | 95.8 | Minus |
CG30458-PA | 438 | CG30458-RA | 1..41 | 315..275 | 155 | 95.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:06:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17290-RC | 2443 | CG17290-RC | 153..453 | 316..16 | 1505 | 100 | Minus |
CG17290-RA | 440 | CG17290-RA | 45..345 | 316..16 | 1505 | 100 | Minus |
CG30458-RA | 614 | CG30458-RA | 300..494 | 210..16 | 675 | 89.7 | Minus |
CG17290-RC | 2443 | CG17290-RC | 237..287 | 190..140 | 195 | 92.2 | Minus |
CG17290-RC | 2443 | CG17290-RC | 279..329 | 232..182 | 195 | 92.2 | Minus |
CG17290-RA | 440 | CG17290-RA | 129..179 | 190..140 | 195 | 92.2 | Minus |
CG17290-RA | 440 | CG17290-RA | 171..221 | 232..182 | 195 | 92.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:06:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17154838..17155135 | 313..16 | 1490 | 100 | Minus |
2R | 25286936 | 2R | 17158445..17158639 | 16..210 | 675 | 89.7 | Plus |
2R | 25286936 | 2R | 17154919..17154969 | 190..140 | 195 | 92.2 | Minus |
2R | 25286936 | 2R | 17154961..17155011 | 232..182 | 195 | 92.2 | Minus |
2R | 25286936 | 2R | 17158822..17158880 | 255..313 | 190 | 88.1 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:06:32 has no hits.
BS11624.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:37 Download gff for
BS11624.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17290-PA | 1..300 | 16..315 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:30:24 Download gff for
BS11624.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17290-RA | 45..345 | 16..316 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:29:58 Download gff for
BS11624.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17290-RA | 45..345 | 16..316 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:29:58 Download gff for
BS11624.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17154836..17155135 | 16..316 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:30:24 Download gff for
BS11624.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13042341..13042640 | 16..316 | 99 | | Minus |
BS11624.pep Sequence
Translation from 16 to 315
> BS11624.pep
MKFLIIAIAFLACAFADVSELSGYDYQQPAPAPVETYIPPAPPAPAPVET
YIPPAPPAPEYIPPAPVQAEEPIIEEIEQPAQDGYRYKTVRRHVFRHRN*
BS11624.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:24:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17290-PC | 99 | CG17290-PC | 1..99 | 1..99 | 532 | 100 | Plus |
CG17290-PA | 99 | CG17290-PA | 1..99 | 1..99 | 532 | 100 | Plus |
CG30458-PA | 145 | CG30458-PA | 1..145 | 1..99 | 380 | 59.3 | Plus |
CG30457-PA | 189 | CG30457-PA | 1..187 | 1..96 | 228 | 38 | Plus |
CG10953-PB | 278 | CG10953-PB | 200..277 | 29..98 | 200 | 55.1 | Plus |