Clone BS11624 Report

Search the DGRC for BS11624

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:116
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptCG17290-RA
Protein status:BS11624.pep: full length peptide match
Sequenced Size:331

Clone Sequence Records

BS11624.complete Sequence

331 bp assembled on 2009-05-14

GenBank Submission: KX805647

> BS11624.complete
GAAGTTATCAGTCGACATGAAATTCCTGATCATTGCCATCGCCTTCTTGG
CCTGCGCATTCGCCGATGTCTCGGAGCTTTCTGGCTACGACTACCAGCAG
CCAGCTCCTGCTCCCGTGGAAACCTACATCCCACCTGCACCGCCAGCACC
TGCTCCCGTCGAGACCTACATCCCACCTGCACCACCAGCACCCGAGTACA
TCCCACCTGCTCCTGTCCAGGCCGAGGAACCCATCATCGAGGAGATCGAG
CAGCCCGCCCAGGACGGCTACCGCTACAAGACCGTCCGCCGCCACGTCTT
CCGTCACCGCAACTAAAGCTTTCTAGACCAT

BS11624.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:36:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG17290-RC 300 CG17290-PC 1..300 17..316 1500 100 Plus
CG17290-RA 300 CG17290-PA 1..300 17..316 1500 100 Plus
CG30458-RA 438 CG30458-PA 244..438 122..316 675 89.7 Plus
CG17290-RC 300 CG17290-PC 84..134 142..192 195 92.2 Plus
CG17290-RC 300 CG17290-PC 126..176 100..150 195 92.2 Plus
CG17290-RA 300 CG17290-PA 126..176 100..150 195 92.2 Plus
CG17290-RA 300 CG17290-PA 84..134 142..192 195 92.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:36:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG17290-RC 2443 CG17290-RC 153..453 16..316 1505 100 Plus
CG17290-RA 440 CG17290-RA 45..345 16..316 1505 100 Plus
CG30458-RA 614 CG30458-RA 300..494 122..316 675 89.7 Plus
CG17290-RC 2443 CG17290-RC 237..287 142..192 195 92.2 Plus
CG17290-RC 2443 CG17290-RC 279..329 100..150 195 92.2 Plus
CG17290-RA 440 CG17290-RA 129..179 142..192 195 92.2 Plus
CG17290-RA 440 CG17290-RA 171..221 100..150 195 92.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:36:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17154838..17155135 19..316 1490 100 Plus
2R 25286936 2R 17158445..17158639 316..122 675 89.7 Minus
2R 25286936 2R 17154919..17154969 142..192 195 92.2 Plus
2R 25286936 2R 17154961..17155011 100..150 195 92.2 Plus
2R 25286936 2R 17158822..17158880 77..19 190 88.1 Minus
Blast to na_te.dros performed on 2014-11-27 07:36:09 has no hits.

BS11624.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-14 12:41:03 Download gff for BS11624.complete
Subject Subject Range Query Range Percent Splice Strand
CG17290-RA 44..341 17..314 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:18:47 Download gff for BS11624.complete
Subject Subject Range Query Range Percent Splice Strand
CG17290-RA 46..343 17..314 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:13:45 Download gff for BS11624.complete
Subject Subject Range Query Range Percent Splice Strand
CG17290-RA 46..343 17..314 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:13:45 Download gff for BS11624.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17154837..17155133 17..314 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:18:47 Download gff for BS11624.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13042342..13042638 17..314 99   Plus

BS11624.5prime Sequence

329 bp (329 high quality bases) assembled on 2006-06-16

> BS11624.5prime
GAAGTTATCAGTCGACATGAAATTCCTGATCATTGCCATCGCCTTCTTGG
CCTGCGCATTCGCCGATGTCTCGGAGCTTTCTGGCTACGACTACCAGCAG
CCAGCTCCTGCTCCCGTGGAAACCTACATCCCACCTGCACCGCCAGCACC
TGCTCCCGTCGAGACCTACATCCCACCTGCACCACCAGCACCCGAGTACA
TCCCACCTGCTCCTGTCCAGGCCGAGGAACCCATCATCGAGGAGATCGAG
CAGCCCGCCCAGGACGGCTACCGCTACAAGACCGTCCGCCGCCACGTCTT
CCGTCACCGCAACTAAAGCTTTCTAGACC

BS11624.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:55:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG17290-PA 300 CG17290-RA 1..300 17..316 1500 100 Plus
CG30458-PA 438 CG30458-RA 319..438 197..316 475 95.8 Plus
CG30458-PA 438 CG30458-RA 1..41 17..57 155 95.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:31:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG17290-RC 2443 CG17290-RC 153..453 16..316 1505 100 Plus
CG17290-RA 440 CG17290-RA 45..345 16..316 1505 100 Plus
CG30458-RA 614 CG30458-RA 300..494 122..316 675 89.7 Plus
CG17290-RC 2443 CG17290-RC 237..287 142..192 195 92.2 Plus
CG17290-RC 2443 CG17290-RC 279..329 100..150 195 92.2 Plus
CG17290-RA 440 CG17290-RA 129..179 142..192 195 92.2 Plus
CG17290-RA 440 CG17290-RA 171..221 100..150 195 92.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:31:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17154838..17155135 19..316 1490 100 Plus
2R 25286936 2R 17158445..17158639 316..122 675 89.7 Minus
2R 25286936 2R 17154919..17154969 142..192 195 92.2 Plus
2R 25286936 2R 17154961..17155011 100..150 195 92.2 Plus
2R 25286936 2R 17158822..17158880 77..19 190 88.1 Minus
Blast to na_te.dros performed on 2015-02-10 22:31:56 has no hits.

BS11624.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:37 Download gff for BS11624.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17290-PA 1..300 17..316 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:52:40 Download gff for BS11624.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17290-RA 45..345 16..316 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:11:53 Download gff for BS11624.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17290-RA 45..345 16..316 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:11:53 Download gff for BS11624.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17154836..17155135 16..316 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:52:40 Download gff for BS11624.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13042341..13042640 16..316 99   Plus

BS11624.3prime Sequence

329 bp (329 high quality bases) assembled on 2006-06-16

> BS11624.3prime
ATGGTCTAGAAAGCTTTAGTTGCGGTGACGGAAGACGTGGCGGCGGACGG
TCTTGTAGCGGTAGCCGTCCTGGGCGGGCTGCTCGATCTCCTCGATGATG
GGTTCCTCGGCCTGGACAGGAGCAGGTGGGATGTACTCGGGTGCTGGTGG
TGCAGGTGGGATGTAGGTCTCGACGGGAGCAGGTGCTGGCGGTGCAGGTG
GGATGTAGGTTTCCACGGGAGCAGGAGCTGGCTGCTGGTAGTCGTAGCCA
GAAAGCTCCGAGACATCGGCGAATGCGCAGGCCAAGAAGGCGATGGCAAT
GATCAGGAATTTCATGTCGACTGATAACT

BS11624.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG17290-PA 300 CG17290-RA 1..300 315..16 1500 100 Minus
CG30458-PA 438 CG30458-RA 319..438 135..16 475 95.8 Minus
CG30458-PA 438 CG30458-RA 1..41 315..275 155 95.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG17290-RC 2443 CG17290-RC 153..453 316..16 1505 100 Minus
CG17290-RA 440 CG17290-RA 45..345 316..16 1505 100 Minus
CG30458-RA 614 CG30458-RA 300..494 210..16 675 89.7 Minus
CG17290-RC 2443 CG17290-RC 237..287 190..140 195 92.2 Minus
CG17290-RC 2443 CG17290-RC 279..329 232..182 195 92.2 Minus
CG17290-RA 440 CG17290-RA 129..179 190..140 195 92.2 Minus
CG17290-RA 440 CG17290-RA 171..221 232..182 195 92.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:06:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17154838..17155135 313..16 1490 100 Minus
2R 25286936 2R 17158445..17158639 16..210 675 89.7 Plus
2R 25286936 2R 17154919..17154969 190..140 195 92.2 Minus
2R 25286936 2R 17154961..17155011 232..182 195 92.2 Minus
2R 25286936 2R 17158822..17158880 255..313 190 88.1 Plus
Blast to na_te.dros performed on 2015-02-11 23:06:32 has no hits.

BS11624.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:37 Download gff for BS11624.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17290-PA 1..300 16..315 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:30:24 Download gff for BS11624.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17290-RA 45..345 16..316 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:29:58 Download gff for BS11624.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17290-RA 45..345 16..316 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:29:58 Download gff for BS11624.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17154836..17155135 16..316 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:30:24 Download gff for BS11624.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13042341..13042640 16..316 99   Minus

BS11624.pep Sequence

Translation from 16 to 315

> BS11624.pep
MKFLIIAIAFLACAFADVSELSGYDYQQPAPAPVETYIPPAPPAPAPVET
YIPPAPPAPEYIPPAPVQAEEPIIEEIEQPAQDGYRYKTVRRHVFRHRN*

BS11624.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:24:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG17290-PC 99 CG17290-PC 1..99 1..99 532 100 Plus
CG17290-PA 99 CG17290-PA 1..99 1..99 532 100 Plus
CG30458-PA 145 CG30458-PA 1..145 1..99 380 59.3 Plus
CG30457-PA 189 CG30457-PA 1..187 1..96 228 38 Plus
CG10953-PB 278 CG10953-PB 200..277 29..98 200 55.1 Plus