Clone BS11629 Report

Search the DGRC for BS11629

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:116
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG31647-RB
Protein status:BS11629.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11629.3prime Sequence

342 bp (342 high quality bases) assembled on 2006-06-16

> BS11629.3prime
ATGGTCTAGAAAGCTTTCAGAATATCCAGCTGCGCCTTTGACACTGGTCG
CATTCGAAGTCACGATCGCACCTCCGGCCAAACTCAGTCGTCGTCTCATT
AGCTTGCTTTTGTTTTTGGTTTGCTGCCAAGTTTTTGCCTAATTGAAAGT
CGGCTTCATTTGAAATGGGCCAAAACGCATCTTCCTTTTTCGTTACTTTT
TTTGTTATGTCTTTTTTTTTTTGGGTTTGGGGTGGAGTCGAAAATCGTTG
GAAGTTCGCCGAACTTGGCCTGCAGTGCACGAGGAGTAATTCCGGTGTTA
ATTTGTACGCAAGATGCCCATCAATCATGTCGACTGATAACT

BS11629.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG31647-PA 930 CG31647-RA 618..930 329..17 1565 100 Minus
CG31647-PB 312 CG31647-RB 1..312 328..17 1560 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-10 21:21:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5436767..5437048 48..329 1410 100 Plus
Blast to na_te.dros performed 2015-02-10 21:21:14
Subject Length Description Subject Range Query Range Score Percent Strand
invader6 4885 invader6 INVADER6 4885bp 3525..3577 238..186 103 66 Minus

BS11629.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:38 Download gff for BS11629.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31647-PA 615..930 17..333 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:37:49 Download gff for BS11629.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5436681..5436711 17..47 100 <- Plus
2L 5436767..5437051 48..333 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:37:49 Download gff for BS11629.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5436681..5436711 17..47 100 <- Plus
2L 5436767..5437051 48..333 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:28:18 Download gff for BS11629.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5436681..5436711 17..47 100 <- Plus
arm_2L 5436767..5437051 48..333 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:28:18 Download gff for BS11629.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5436681..5436711 17..47 100 <- Plus
arm_2L 5436767..5437051 48..333 99   Plus

BS11629.5prime Sequence

342 bp (342 high quality bases) assembled on 2006-06-16

> BS11629.5prime
GAAGTTATCAGTCGACATGATTGATGGGCATCTTGCGTACAAATTAACAC
CGGAATTACTCCTCGTGCACTGCAGGCCAAGTTCGGCGAACTTCCAACGA
TTTTCGACTCCACCCCAAACCCAAAAAAAAAAAGACATAACAAAAAAAGT
AACGAAAAAGGAAGATGCGTTTTGGCCCATTTCAAATGAAGCCGACTTTC
AATTAGGCAAAAACTTGGCAGCAAACCAAAAACAAAAGCAAGCTAATGAG
ACGACGACTGAGTTTGGCCGGAGGTGCGATCGTGACTTCGAATGCGACCA
GTGTCAAAGGCGCAGCTGGATATTCTGAAAGCTTTCTAGACC

BS11629.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG31647-PA 930 CG31647-RA 618..930 16..328 1565 100 Plus
CG31647-PB 312 CG31647-RB 1..312 17..328 1560 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-08 12:11:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:11:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5436767..5437048 297..16 1410 100 Minus
Blast to na_te.dros performed 2015-02-08 12:11:33
Subject Length Description Subject Range Query Range Score Percent Strand
invader6 4885 invader6 INVADER6 4885bp 3525..3577 107..159 103 66 Plus

BS11629.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:39 Download gff for BS11629.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31647-PA 615..930 12..328 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:15 Download gff for BS11629.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5436681..5436711 298..328 100 <- Minus
2L 5436767..5437051 12..297 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:15 Download gff for BS11629.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5436681..5436711 298..328 100 <- Minus
2L 5436767..5437051 12..297 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:37 Download gff for BS11629.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5436681..5436711 298..328 100 <- Minus
arm_2L 5436767..5437051 12..297 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:37 Download gff for BS11629.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5436681..5436711 298..328 100 <- Minus
arm_2L 5436767..5437051 12..297 99   Minus

BS11629.complete Sequence

344 bp assembled on 2006-11-01

GenBank Submission: FJ636919

> BS11629.complete
GAAGTTATCAGTCGACATGATTGATGGGCATCTTGCGTACAAATTAACAC
CGGAATTACTCCTCGTGCACTGCAGGCCAAGTTCGGCGAACTTCCAACGA
TTTTCGACTCCACCCCAAACCCAAAAAAAAAAAGACATAACAAAAAAAGT
AACGAAAAAGGAAGATGCGTTTTGGCCCATTTCAAATGAAGCCGACTTTC
AATTAGGCAAAAACTTGGCAGCAAACCAAAAACAAAAGCAAGCTAATGAG
ACGACGACTGAGTTTGGCCGGAGGTGCGATCGTGACTTCGAATGCGACCA
GTGTCAAAGGCGCAGCTGGATATTCTGAAAGCTTTCTAGACCAT

BS11629.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 14:47:03 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 14:47:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5436767..5437048 297..16 1410 100 Minus
Blast to na_te.dros performed 2014-11-27 14:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
invader6 4885 invader6 INVADER6 4885bp 3525..3577 107..159 103 66 Plus

BS11629.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:50 Download gff for BS11629.complete
Subject Subject Range Query Range Percent Splice Strand
CG31647-RA 615..930 12..328 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:47 Download gff for BS11629.complete
Subject Subject Range Query Range Percent Splice Strand
CG31647-RA 615..930 12..328 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:50 Download gff for BS11629.complete
Subject Subject Range Query Range Percent Splice Strand
CG31647-RA 615..930 12..328 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:33 Download gff for BS11629.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5436767..5437047 17..297 100   Minus
2L 5436682..5436711 298..327 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:33 Download gff for BS11629.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5436767..5437047 17..297 100   Minus
2L 5436682..5436711 298..327 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:42 Download gff for BS11629.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5436682..5436711 298..327 100 <- Minus
arm_2L 5436767..5437047 17..297 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:42 Download gff for BS11629.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5436682..5436711 298..327 100 <- Minus
arm_2L 5436767..5437047 17..297 100   Minus

BS11629.pep Sequence

Translation from 16 to 327

> BS11629.pep
MIDGHLAYKLTPELLLVHCRPSSANFQRFSTPPQTQKKKDITKKVTKKED
AFWPISNEADFQLGKNLAANQKQKQANETTTEFGRRCDRDFECDQCQRRS
WIF*
Sequence BS11629.pep has no blast hits.