Clone Sequence Records
BS11629.3prime Sequence
342 bp (342 high quality bases) assembled on 2006-06-16
> BS11629.3prime
ATGGTCTAGAAAGCTTTCAGAATATCCAGCTGCGCCTTTGACACTGGTCG
CATTCGAAGTCACGATCGCACCTCCGGCCAAACTCAGTCGTCGTCTCATT
AGCTTGCTTTTGTTTTTGGTTTGCTGCCAAGTTTTTGCCTAATTGAAAGT
CGGCTTCATTTGAAATGGGCCAAAACGCATCTTCCTTTTTCGTTACTTTT
TTTGTTATGTCTTTTTTTTTTTGGGTTTGGGGTGGAGTCGAAAATCGTTG
GAAGTTCGCCGAACTTGGCCTGCAGTGCACGAGGAGTAATTCCGGTGTTA
ATTTGTACGCAAGATGCCCATCAATCATGTCGACTGATAACT
BS11629.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31647-PA | 930 | CG31647-RA | 618..930 | 329..17 | 1565 | 100 | Minus |
CG31647-PB | 312 | CG31647-RB | 1..312 | 328..17 | 1560 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-10 21:21:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5436767..5437048 | 48..329 | 1410 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 21:21:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader6 | 4885 | invader6 INVADER6 4885bp | 3525..3577 | 238..186 | 103 | 66 | Minus |
BS11629.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:38 Download gff for
BS11629.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31647-PA | 615..930 | 17..333 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:37:49 Download gff for
BS11629.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5436681..5436711 | 17..47 | 100 | <- | Plus |
2L | 5436767..5437051 | 48..333 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:37:49 Download gff for
BS11629.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5436681..5436711 | 17..47 | 100 | <- | Plus |
2L | 5436767..5437051 | 48..333 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:28:18 Download gff for
BS11629.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5436681..5436711 | 17..47 | 100 | <- | Plus |
arm_2L | 5436767..5437051 | 48..333 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:28:18 Download gff for
BS11629.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5436681..5436711 | 17..47 | 100 | <- | Plus |
arm_2L | 5436767..5437051 | 48..333 | 99 | | Plus |
BS11629.5prime Sequence
342 bp (342 high quality bases) assembled on 2006-06-16
> BS11629.5prime
GAAGTTATCAGTCGACATGATTGATGGGCATCTTGCGTACAAATTAACAC
CGGAATTACTCCTCGTGCACTGCAGGCCAAGTTCGGCGAACTTCCAACGA
TTTTCGACTCCACCCCAAACCCAAAAAAAAAAAGACATAACAAAAAAAGT
AACGAAAAAGGAAGATGCGTTTTGGCCCATTTCAAATGAAGCCGACTTTC
AATTAGGCAAAAACTTGGCAGCAAACCAAAAACAAAAGCAAGCTAATGAG
ACGACGACTGAGTTTGGCCGGAGGTGCGATCGTGACTTCGAATGCGACCA
GTGTCAAAGGCGCAGCTGGATATTCTGAAAGCTTTCTAGACC
BS11629.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31647-PA | 930 | CG31647-RA | 618..930 | 16..328 | 1565 | 100 | Plus |
CG31647-PB | 312 | CG31647-RB | 1..312 | 17..328 | 1560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-08 12:11:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:11:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5436767..5437048 | 297..16 | 1410 | 100 | Minus |
Blast to na_te.dros performed 2015-02-08 12:11:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader6 | 4885 | invader6 INVADER6 4885bp | 3525..3577 | 107..159 | 103 | 66 | Plus |
BS11629.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:39 Download gff for
BS11629.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31647-PA | 615..930 | 12..328 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:15 Download gff for
BS11629.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5436681..5436711 | 298..328 | 100 | <- | Minus |
2L | 5436767..5437051 | 12..297 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:15 Download gff for
BS11629.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5436681..5436711 | 298..328 | 100 | <- | Minus |
2L | 5436767..5437051 | 12..297 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:37 Download gff for
BS11629.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5436681..5436711 | 298..328 | 100 | <- | Minus |
arm_2L | 5436767..5437051 | 12..297 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:37 Download gff for
BS11629.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5436681..5436711 | 298..328 | 100 | <- | Minus |
arm_2L | 5436767..5437051 | 12..297 | 99 | | Minus |
BS11629.complete Sequence
344 bp assembled on 2006-11-01
GenBank Submission: FJ636919
> BS11629.complete
GAAGTTATCAGTCGACATGATTGATGGGCATCTTGCGTACAAATTAACAC
CGGAATTACTCCTCGTGCACTGCAGGCCAAGTTCGGCGAACTTCCAACGA
TTTTCGACTCCACCCCAAACCCAAAAAAAAAAAGACATAACAAAAAAAGT
AACGAAAAAGGAAGATGCGTTTTGGCCCATTTCAAATGAAGCCGACTTTC
AATTAGGCAAAAACTTGGCAGCAAACCAAAAACAAAAGCAAGCTAATGAG
ACGACGACTGAGTTTGGCCGGAGGTGCGATCGTGACTTCGAATGCGACCA
GTGTCAAAGGCGCAGCTGGATATTCTGAAAGCTTTCTAGACCAT
BS11629.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 14:47:03 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 14:47:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:47:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5436767..5437048 | 297..16 | 1410 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:47:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader6 | 4885 | invader6 INVADER6 4885bp | 3525..3577 | 107..159 | 103 | 66 | Plus |
BS11629.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:50 Download gff for
BS11629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31647-RA | 615..930 | 12..328 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:47 Download gff for
BS11629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31647-RA | 615..930 | 12..328 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:50 Download gff for
BS11629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31647-RA | 615..930 | 12..328 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:33 Download gff for
BS11629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5436767..5437047 | 17..297 | 100 | | Minus |
2L | 5436682..5436711 | 298..327 | 100 | <- | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:33 Download gff for
BS11629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5436767..5437047 | 17..297 | 100 | | Minus |
2L | 5436682..5436711 | 298..327 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:42 Download gff for
BS11629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5436682..5436711 | 298..327 | 100 | <- | Minus |
arm_2L | 5436767..5437047 | 17..297 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:42 Download gff for
BS11629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5436682..5436711 | 298..327 | 100 | <- | Minus |
arm_2L | 5436767..5437047 | 17..297 | 100 | | Minus |
BS11629.pep Sequence
Translation from 16 to 327
> BS11629.pep
MIDGHLAYKLTPELLLVHCRPSSANFQRFSTPPQTQKKKDITKKVTKKED
AFWPISNEADFQLGKNLAANQKQKQANETTTEFGRRCDRDFECDQCQRRS
WIF*
Sequence BS11629.pep has no blast hits.