Clone Sequence Records
BS11631.5prime Sequence
339 bp (339 high quality bases) assembled on 2006-06-16
> BS11631.5prime
GAAGTTATCAGTCGACATGTCGAACAAAATTGAAGTCTCGCTTCCGGAGG
AGGAACTGGATTGGATACAATTGCGCCAGGACCTGGGACCCGTTGCCGAG
GTGGAAACGACCAAGGAGAAGTTGCAGCGCAAGATCAAGGAGAATCCGCT
GGTTCCGTTGGGATGTTTGGCCACTACAGCGGCGCTCACAGCTGGCTTAT
ACAACTTTCGCACTGGCAATCGCAAGATGTCGCAGCTGATGATGCGAAGT
CGTATCGCGGCTCAGGGATTTACCGTTATGGCCCTAGTTGTCGGCGTCGT
CATGACCTACACTGATAAAAAATAAAAGCTTTCTAGACC
BS11631.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9921-PA | 309 | CG9921-RA | 1..309 | 17..325 | 1545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:19:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9921-RC | 985 | CG9921-RC | 392..704 | 13..325 | 1550 | 99.7 | Plus |
CG9921-RB | 685 | CG9921-RB | 92..404 | 13..325 | 1550 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:19:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16331562..16331726 | 325..161 | 825 | 100 | Minus |
X | 23542271 | X | 16331808..16331957 | 162..13 | 735 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:19:55 has no hits.
BS11631.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:41 Download gff for
BS11631.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9921-PA | 1..309 | 17..325 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:36:54 Download gff for
BS11631.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9921-RB | 86..406 | 6..330 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:56 Download gff for
BS11631.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9921-RB | 86..406 | 6..330 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:56 Download gff for
BS11631.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16331560..16331725 | 162..330 | 98 | <- | Minus |
X | 16331809..16331963 | 6..161 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:36:54 Download gff for
BS11631.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16225593..16225758 | 162..330 | 98 | <- | Minus |
arm_X | 16225842..16225996 | 6..161 | 97 | | Minus |
BS11631.3prime Sequence
339 bp (339 high quality bases) assembled on 2006-06-16
> BS11631.3prime
ATGGTCTAGAAAGCTTTTATTTTTTATCAGTGTAGGTCATGACGACGCCG
ACAACTAGGGCCATAACGGTAAATCCCTGAGCCGCGATACGACTTCGCAT
CATCAGCTGCGACATCTTGCGATTGCCAGTGCGAAAGTTGTATAAGCCAG
CTGTGAGCGCCGCTGTAGTGGCCAAACATCCCAACGGAACCAGCGGATTC
TCCTTGATCTTGCGCTGCAACTTCTCCTTGGTCGTTTCCACCTCGGCAAC
GGGTCCCAGGTCCTGGCGCAATTGTATCCAATCCAGTTCCTCCTCCGGAA
GCGAGACTTCAATTTTGTTCGACATGTCGACTGATAACT
BS11631.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9921-PA | 309 | CG9921-RA | 1..309 | 325..17 | 1545 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:12:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9921-RC | 985 | CG9921-RC | 392..704 | 329..17 | 1550 | 99.7 | Minus |
CG9921-RB | 685 | CG9921-RB | 92..404 | 329..17 | 1550 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:11:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16331562..16331726 | 17..181 | 825 | 100 | Plus |
X | 23542271 | X | 16331808..16331957 | 180..329 | 735 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:11:57 has no hits.
BS11631.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:40 Download gff for
BS11631.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9921-PA | 1..309 | 17..325 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:40 Download gff for
BS11631.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9921-RB | 86..406 | 12..336 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:18 Download gff for
BS11631.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9921-RB | 86..406 | 12..336 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:18 Download gff for
BS11631.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16331560..16331725 | 12..180 | 98 | <- | Plus |
X | 16331809..16331963 | 181..336 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:40 Download gff for
BS11631.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16225593..16225758 | 12..180 | 98 | <- | Plus |
arm_X | 16225842..16225996 | 181..336 | 97 | | Plus |
BS11631.complete Sequence
341 bp assembled on 2006-11-01
GenBank Submission: FJ636920
> BS11631.complete
GAAGTTATCAGTCGACATGTCGAACAAAATTGAAGTCTCGCTTCCGGAGG
AGGAACTGGATTGGATACAATTGCGCCAGGACCTGGGACCCGTTGCCGAG
GTGGAAACGACCAAGGAGAAGTTGCAGCGCAAGATCAAGGAGAATCCGCT
GGTTCCGTTGGGATGTTTGGCCACTACAGCGGCGCTCACAGCTGGCTTAT
ACAACTTTCGCACTGGCAATCGCAAGATGTCGCAGCTGATGATGCGAAGT
CGTATCGCGGCTCAGGGATTTACCGTTATGGCCCTAGTTGTCGGCGTCGT
CATGACCTACACTGATAAAAAATAAAAGCTTTCTAGACCAT
BS11631.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:23:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9921-RC | 309 | CG9921-PC | 1..309 | 17..325 | 1545 | 100 | Plus |
CG9921-RB | 309 | CG9921-PB | 1..309 | 17..325 | 1545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:23:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9921-RC | 985 | CG9921-RC | 392..704 | 13..325 | 1550 | 99.7 | Plus |
CG9921-RB | 685 | CG9921-RB | 92..404 | 13..325 | 1550 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:23:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16331562..16331726 | 325..161 | 825 | 100 | Minus |
X | 23542271 | X | 16331808..16331957 | 162..13 | 735 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:23:02 has no hits.
BS11631.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:50 Download gff for
BS11631.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9921-RA | 1..309 | 17..325 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:11 Download gff for
BS11631.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9921-RA | 186..506 | 6..330 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:51:09 Download gff for
BS11631.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9921-RB | 96..393 | 17..314 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:50 Download gff for
BS11631.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9921-RA | 186..506 | 6..330 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:30 Download gff for
BS11631.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9921-RB | 96..393 | 17..314 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:30 Download gff for
BS11631.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16331573..16331725 | 162..314 | 100 | <- | Minus |
X | 16331809..16331953 | 17..161 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:51:09 Download gff for
BS11631.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16225606..16225758 | 162..314 | 100 | <- | Minus |
arm_X | 16225842..16225986 | 17..161 | 100 | | Minus |
BS11631.pep Sequence
Translation from 16 to 324
> BS11631.pep
MSNKIEVSLPEEELDWIQLRQDLGPVAEVETTKEKLQRKIKENPLVPLGC
LATTAALTAGLYNFRTGNRKMSQLMMRSRIAAQGFTVMALVVGVVMTYTD
KK*
BS11631.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9921-PC | 102 | CG9921-PC | 1..102 | 1..102 | 510 | 100 | Plus |
CG9921-PB | 102 | CG9921-PB | 1..102 | 1..102 | 510 | 100 | Plus |