Clone BS11633 Report

Search the DGRC for BS11633

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:116
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptAstA-RA
Protein status:BS11633.pep: full length peptide match
Sequenced Size:488

Clone Sequence Records

BS11633.3prime Sequence

486 bp (486 high quality bases) assembled on 2006-06-16

> BS11633.3prime
ATGGTCTAGAAAGCTTTTAACGTCGGCCCAGGCCAAAGTTGAAGGGTTGC
GGACGCGTCGTTCGCTTGTTCTGTCGGCCAGGTCGCACAGCACGCTCGGC
TGCCAAGTAGTTCGCTGGCGGCACTCTGTAGTCGATCTCGTTGTCCTGGT
CGTAGTCGTAGTCGCTGCGTTTGCCCAGTCCGAAGGAGTAGGGACGAGAC
CTCTTGCCCAGACCGAAGTTATAGACCGGCAGGCGCTTCATGCCCGGTCC
GCCGTTCGTGTACATATAGGCCCGTCGTCCCAGACCGAAGGCGTACCGCT
CCACCCGCTTGTCGATGTTGTCGCCACCGTTGTCGGCCATCTCGTCGGCG
GCCAGCAGGACATCGGCATCGCTGTCTCCGCTGCGCTGATCCTGGCCAAT
TACCGGGGAGCTGGCGATGTAGCCGACGCAGCAAACTGCCAGCAGTAGGA
GGTGGGCGTGAAGGGAGTTCATGTCGACTGATAACT

BS11633.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:56:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG13633-PA 456 Ast-RA 1..456 472..17 2280 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:53:39
Subject Length Description Subject Range Query Range Score Percent Strand
AstA-RB 1054 CG13633-RB 273..728 472..17 2280 100 Minus
AstA-RA 1459 CG13633-RA 276..731 472..17 2280 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24761390..24761774 88..472 1925 100 Plus
3R 32079331 3R 24761258..24761333 17..92 365 98.7 Plus
Blast to na_te.dros performed on 2015-02-11 18:53:37 has no hits.

BS11633.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:42 Download gff for BS11633.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13633-PA 1..456 17..472 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:59:14 Download gff for BS11633.3prime
Subject Subject Range Query Range Percent Splice Strand
Ast-RA 266..731 17..483 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:25:23 Download gff for BS11633.3prime
Subject Subject Range Query Range Percent Splice Strand
AstA-RA 266..731 17..483 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:25:23 Download gff for BS11633.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24761258..24761328 17..87 100 <- Plus
3R 24761390..24761784 88..483 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:59:14 Download gff for BS11633.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20586980..20587050 17..87 100 <- Plus
arm_3R 20587112..20587506 88..483 98   Plus

BS11633.complete Sequence

488 bp assembled on 2009-02-12

> BS11633.complete
GAAGTTATCAGTCGACATGAACTCCCTTCACGCCCACCTCCTACTGCTGG
CAGTTTGCTGCGTCGGCTACATCGCCAGCTCCCCGGTAATTGGCCAGGAT
CAGCGCAGCGGAGACAGCGATGCCGATGTCCTGCTGGCCGCCGACGAGAT
GGCCGACAACGGTGGCGACAACATCGACAAGCGGGTGGAGCGGTACGCCT
TCGGTCTGGGACGACGGGCCTATATGTACACGAACGGCGGACCGGGCATG
AAGCGCCTGCCGGTCTATAACTTCGGTCTGGGCAAGAGGTCTCGTCCCTA
CTCCTTCGGACTGGGCAAACGCAGCGACTACGACTACGACCAGGACAACG
AGATCGACTACAGAGTGCCGCCAGCGAACTACTTGGCAGCCGAGCGTGCT
GTGCGACCTGGCCGACAGAACAAGCGAACGACGCGTCCGCAACCCTTCAA
CTTTGGCCTGGGCCGACGTTAAAAGCTTTCTAGACCAT

BS11633.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:55:27
Subject Length Description Subject Range Query Range Score Percent Strand
AstA-RB 456 CG13633-PB 1..456 17..472 2280 100 Plus
AstA-RA 456 CG13633-PA 1..456 17..472 2280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:55:28
Subject Length Description Subject Range Query Range Score Percent Strand
AstA-RB 1054 CG13633-RB 273..728 17..472 2280 100 Plus
AstA-RA 1459 CG13633-RA 276..731 17..472 2280 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24761390..24761774 401..17 1925 100 Minus
3R 32079331 3R 24761258..24761333 472..397 365 98.7 Minus
Blast to na_te.dros performed on 2014-11-27 20:55:26 has no hits.

BS11633.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:45 Download gff for BS11633.complete
Subject Subject Range Query Range Percent Splice Strand
Ast-RA 263..716 17..470 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:58 Download gff for BS11633.complete
Subject Subject Range Query Range Percent Splice Strand
Ast-RA 276..729 17..470 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:00 Download gff for BS11633.complete
Subject Subject Range Query Range Percent Splice Strand
AstA-RA 276..729 17..470 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:00 Download gff for BS11633.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24761260..24761328 402..470 100 <- Minus
3R 24761390..24761774 17..401 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:58 Download gff for BS11633.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20586982..20587050 402..470 100 <- Minus
arm_3R 20587112..20587496 17..401 100   Minus

BS11633.pep Sequence

Translation from 16 to 471

> BS11633.pep
MNSLHAHLLLLAVCCVGYIASSPVIGQDQRSGDSDADVLLAADEMADNGG
DNIDKRVERYAFGLGRRAYMYTNGGPGMKRLPVYNFGLGKRSRPYSFGLG
KRSDYDYDQDNEIDYRVPPANYLAAERAVRPGRQNKRTTRPQPFNFGLGR
R*

BS11633.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
AstA-PB 151 CG13633-PB 1..151 1..151 805 100 Plus
AstA-PA 151 CG13633-PA 1..151 1..151 805 100 Plus