Clone Sequence Records
BS11633.3prime Sequence
486 bp (486 high quality bases) assembled on 2006-06-16
> BS11633.3prime
ATGGTCTAGAAAGCTTTTAACGTCGGCCCAGGCCAAAGTTGAAGGGTTGC
GGACGCGTCGTTCGCTTGTTCTGTCGGCCAGGTCGCACAGCACGCTCGGC
TGCCAAGTAGTTCGCTGGCGGCACTCTGTAGTCGATCTCGTTGTCCTGGT
CGTAGTCGTAGTCGCTGCGTTTGCCCAGTCCGAAGGAGTAGGGACGAGAC
CTCTTGCCCAGACCGAAGTTATAGACCGGCAGGCGCTTCATGCCCGGTCC
GCCGTTCGTGTACATATAGGCCCGTCGTCCCAGACCGAAGGCGTACCGCT
CCACCCGCTTGTCGATGTTGTCGCCACCGTTGTCGGCCATCTCGTCGGCG
GCCAGCAGGACATCGGCATCGCTGTCTCCGCTGCGCTGATCCTGGCCAAT
TACCGGGGAGCTGGCGATGTAGCCGACGCAGCAAACTGCCAGCAGTAGGA
GGTGGGCGTGAAGGGAGTTCATGTCGACTGATAACT
BS11633.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:56:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13633-PA | 456 | Ast-RA | 1..456 | 472..17 | 2280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:53:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AstA-RB | 1054 | CG13633-RB | 273..728 | 472..17 | 2280 | 100 | Minus |
AstA-RA | 1459 | CG13633-RA | 276..731 | 472..17 | 2280 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:53:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24761390..24761774 | 88..472 | 1925 | 100 | Plus |
3R | 32079331 | 3R | 24761258..24761333 | 17..92 | 365 | 98.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:53:37 has no hits.
BS11633.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:42 Download gff for
BS11633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13633-PA | 1..456 | 17..472 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:59:14 Download gff for
BS11633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ast-RA | 266..731 | 17..483 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:25:23 Download gff for
BS11633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AstA-RA | 266..731 | 17..483 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:25:23 Download gff for
BS11633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24761258..24761328 | 17..87 | 100 | <- | Plus |
3R | 24761390..24761784 | 88..483 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:59:14 Download gff for
BS11633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20586980..20587050 | 17..87 | 100 | <- | Plus |
arm_3R | 20587112..20587506 | 88..483 | 98 | | Plus |
BS11633.complete Sequence
488 bp assembled on 2009-02-12
> BS11633.complete
GAAGTTATCAGTCGACATGAACTCCCTTCACGCCCACCTCCTACTGCTGG
CAGTTTGCTGCGTCGGCTACATCGCCAGCTCCCCGGTAATTGGCCAGGAT
CAGCGCAGCGGAGACAGCGATGCCGATGTCCTGCTGGCCGCCGACGAGAT
GGCCGACAACGGTGGCGACAACATCGACAAGCGGGTGGAGCGGTACGCCT
TCGGTCTGGGACGACGGGCCTATATGTACACGAACGGCGGACCGGGCATG
AAGCGCCTGCCGGTCTATAACTTCGGTCTGGGCAAGAGGTCTCGTCCCTA
CTCCTTCGGACTGGGCAAACGCAGCGACTACGACTACGACCAGGACAACG
AGATCGACTACAGAGTGCCGCCAGCGAACTACTTGGCAGCCGAGCGTGCT
GTGCGACCTGGCCGACAGAACAAGCGAACGACGCGTCCGCAACCCTTCAA
CTTTGGCCTGGGCCGACGTTAAAAGCTTTCTAGACCAT
BS11633.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:55:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AstA-RB | 456 | CG13633-PB | 1..456 | 17..472 | 2280 | 100 | Plus |
AstA-RA | 456 | CG13633-PA | 1..456 | 17..472 | 2280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:55:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AstA-RB | 1054 | CG13633-RB | 273..728 | 17..472 | 2280 | 100 | Plus |
AstA-RA | 1459 | CG13633-RA | 276..731 | 17..472 | 2280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:55:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24761390..24761774 | 401..17 | 1925 | 100 | Minus |
3R | 32079331 | 3R | 24761258..24761333 | 472..397 | 365 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:55:26 has no hits.
BS11633.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:45 Download gff for
BS11633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ast-RA | 263..716 | 17..470 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:58 Download gff for
BS11633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ast-RA | 276..729 | 17..470 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:00 Download gff for
BS11633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AstA-RA | 276..729 | 17..470 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:00 Download gff for
BS11633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24761260..24761328 | 402..470 | 100 | <- | Minus |
3R | 24761390..24761774 | 17..401 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:58 Download gff for
BS11633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20586982..20587050 | 402..470 | 100 | <- | Minus |
arm_3R | 20587112..20587496 | 17..401 | 100 | | Minus |
BS11633.pep Sequence
Translation from 16 to 471
> BS11633.pep
MNSLHAHLLLLAVCCVGYIASSPVIGQDQRSGDSDADVLLAADEMADNGG
DNIDKRVERYAFGLGRRAYMYTNGGPGMKRLPVYNFGLGKRSRPYSFGLG
KRSDYDYDQDNEIDYRVPPANYLAAERAVRPGRQNKRTTRPQPFNFGLGR
R*
BS11633.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:59:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AstA-PB | 151 | CG13633-PB | 1..151 | 1..151 | 805 | 100 | Plus |
AstA-PA | 151 | CG13633-PA | 1..151 | 1..151 | 805 | 100 | Plus |