BS11636.complete Sequence
1118 bp assembled on 2010-07-02
GenBank Submission: KX805499
> BS11636.complete
GAAGTTATCAGTCGACATGGCGGATGTCCTGGAGAAAAGCTCACTGCTGG
ATGCTGTGCCACCACTAGGCGACCCCCACCCACCGCTGCCCCACCAGCAG
CTGCAACAGGAAGCAGCAGCAGCAGCAGCAGCAAATGCCGCACCACCAGC
ACCACCGCAGCAGCAACAACCACCACCCCATCAGCTGCAGCAGCAGCAGC
CGCAACAACAGCAACTGCAACAGAAGCCAGCAAATGCGAGGGCTAATCAG
GATCAAAAAGAGGGCGACAATGACAGCGGCGTGGATGAGTCCACTCAGGA
GAAGGATCGCAACGGACCCAACTCGCCCAGTTCGCCCGTAAAAACGCCCA
CATCGACCTCATCGAAGCCGGACAAGTCGGGCACGTCGCGTCCACCGAGT
GCCACGCCCTCGAACAAGTCAGCCCCCAAATCGCGCAGCGCCTCCAAGAA
CCGCTTGCTCCTCAAGACCCCAGAGCCCGAGCCAGTGAAGAAAGTTCCAA
TGAACAAGGTACAAGTCGGACATGCGCCTTCACCCAATCTGAAGGCGGTA
CGCTCCAAGATCGGATCCCTGGACAATGCCACCTATAAGCCGGGTGGCGG
CCACGTGAAAATCGAGTCCAAGAAGATCGACATCAAGGCGGCACCGCGCA
TCGAGGCCAAGAACGACAAGTACATGCCAAAGGGCGGCGAGAAGAAGATA
GTTACAACAAAGTTGCAGTGGAACGCCAAGTCCAAAATCGGTTCGCTGGA
GAATGCCGCCCACAAGCCGGGAGGCGGGGACAAGAAGATCGAGACCCTGA
AGATGGACTTCAAGGACAAGGCCAAGCCGAAGGTGGGCTCGACGGCCAAT
GTGAAACATCAGCCGGGTGGCGGAGACATCAAGATCCAAACGCAAAAACT
AGAAATTAAGGCACAAAGCAAAGTTGGCTCTTTGGATAATGTAAAGCACA
AGCCCGGTGGCGGTGAGAAGAAGATTTTCGATGATAAGGATTATTTGAAA
AATGTTGAACACTCTGTTGCACTGACAACACCACCAACACAGAGTCCACT
ACCATCCATGACGGCTTCTGGCGCTGATGAAAATTTAAATCAACAAAGCT
AAAAGCTTTCTAGACCAT
BS11636.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:23:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tau-RB | 1086 | CG45110-PB | 1..1086 | 17..1102 | 5430 | 100 | Plus |
| tau-RA | 1086 | CG45110-PA | 1..1086 | 17..1102 | 5430 | 100 | Plus |
| tau-RM | 1104 | CG45110-PM | 1..1104 | 17..1102 | 5215 | 98.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:23:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tau-RB | 2425 | CG45110-RB | 548..1634 | 17..1103 | 5435 | 100 | Plus |
| tau-RA | 2243 | CG45110-RA | 366..1452 | 17..1103 | 5435 | 100 | Plus |
| tau-RM | 2261 | CG45110-RM | 366..1470 | 17..1103 | 5220 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:23:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27656206..27656449 | 260..17 | 1220 | 100 | Minus |
| 3R | 32079331 | 3R | 27646041..27646245 | 697..493 | 1025 | 100 | Minus |
| 3R | 32079331 | 3R | 27646336..27646527 | 494..303 | 960 | 100 | Minus |
| 3R | 32079331 | 3R | 27645225..27645412 | 883..696 | 940 | 100 | Minus |
| 3R | 32079331 | 3R | 27643815..27643975 | 1042..882 | 805 | 100 | Minus |
| 3R | 32079331 | 3R | 27641434..27641501 | 1103..1036 | 325 | 98.5 | Minus |
| 3R | 32079331 | 3R | 27647564..27647610 | 305..259 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:23:16 has no hits.
BS11636.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 13:34:45 Download gff for
BS11636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tau-RA | 362..1445 | 17..1100 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:18:07 Download gff for
BS11636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tau-RA | 366..1449 | 17..1100 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:28:10 Download gff for
BS11636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tau-RA | 366..1449 | 17..1100 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:28:10 Download gff for
BS11636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27656206..27656449 | 17..260 | 100 | | Minus |
| 3R | 27641437..27641494 | 1043..1100 | 100 | <- | Minus |
| 3R | 27643815..27643973 | 884..1042 | 100 | <- | Minus |
| 3R | 27645225..27645410 | 698..883 | 100 | <- | Minus |
| 3R | 27646041..27646243 | 495..697 | 100 | <- | Minus |
| 3R | 27646336..27646525 | 305..494 | 100 | <- | Minus |
| 3R | 27647565..27647608 | 261..304 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:18:07 Download gff for
BS11636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23469537..23469695 | 884..1042 | 100 | <- | Minus |
| arm_3R | 23467159..23467216 | 1043..1100 | 100 | <- | Minus |
| arm_3R | 23470947..23471132 | 698..883 | 100 | <- | Minus |
| arm_3R | 23471763..23471965 | 495..697 | 100 | <- | Minus |
| arm_3R | 23472058..23472247 | 305..494 | 100 | <- | Minus |
| arm_3R | 23473287..23473330 | 261..304 | 100 | <- | Minus |
| arm_3R | 23481928..23482171 | 17..260 | 100 | | Minus |
BS11636.pep Sequence
Translation from 16 to 1101
> BS11636.pep
MADVLEKSSLLDAVPPLGDPHPPLPHQQLQQEAAAAAAANAAPPAPPQQQ
QPPPHQLQQQQPQQQQLQQKPANARANQDQKEGDNDSGVDESTQEKDRNG
PNSPSSPVKTPTSTSSKPDKSGTSRPPSATPSNKSAPKSRSASKNRLLLK
TPEPEPVKKVPMNKVQVGHAPSPNLKAVRSKIGSLDNATYKPGGGHVKIE
SKKIDIKAAPRIEAKNDKYMPKGGEKKIVTTKLQWNAKSKIGSLENAAHK
PGGGDKKIETLKMDFKDKAKPKVGSTANVKHQPGGGDIKIQTQKLEIKAQ
SKVGSLDNVKHKPGGGEKKIFDDKDYLKNVEHSVALTTPPTQSPLPSMTA
SGADENLNQQS*
BS11636.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:35:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tau-PB | 361 | CG45110-PB | 1..361 | 1..361 | 1877 | 100 | Plus |
| tau-PA | 361 | CG45110-PA | 1..361 | 1..361 | 1877 | 100 | Plus |
| tau-PM | 367 | CG45110-PM | 1..367 | 1..361 | 1860 | 98.4 | Plus |
| tau-PC | 349 | CG45110-PC | 1..342 | 1..342 | 1782 | 100 | Plus |
| tau-PF | 403 | CG45110-PF | 1..342 | 1..342 | 1782 | 100 | Plus |
