BS11641.complete Sequence
1715 bp assembled on 2009-12-07
GenBank Submission: KX801010
> BS11641.complete
GAAGTTATCAGTCGACATGCGGATCGAACCTGGGGACTCCTTTTGGACGA
AAAAGGCGATGTTTTCCAACGCAGAAAGGCAGTACTTTGAGACGGTCCGT
CCGCGGAAGACCAGTCTTCCGGGCTCCACCGCGCCCAACATAGCCGCTCC
GGTAACAAAGGCCACGAAGAAGAATAAGACGATGGCCGAGATGATGCCAA
ACAAACTGCTTTACATGAATCCGCTTACCATGGAGGCACACTTCTTTCTG
CAGACCCTAAACTCAGTGAACCAGACGACGAATCCGCCGCAGCTAGACCC
GCACCTGGCCAACCTGCTGGAGCGCATTATGGTGGGCATCGAGAGCTACT
TGGACAGGAATCCCACATACGTTTTGCCGCAGGAGATGGCCGCACCGGGT
GAGGGCGTGGCCTTCGTCCAGCCCCAGGAGCTGCAGACAATAAAGCGAAC
ATTCAGCTGTAGTTCCTGCAGCAACCGCATAGTGGGCACCACCATCGCAA
AAGCTGTGGCCCACCTTTCGGAGCAGCATCCAAAACCCAATCCCAACAAT
CAGCCAGTCCAGCCGCATCCGACGCATCAGACGAAACAGGAGAAAAAGCA
GGCCCAGGTGAAGGCTCGTCAGCATATAACAGTACGGCTACCCAAGAAGG
CCAGGGCAATGATTGTGGGAGAGATTACGAATGTGTTTAAGGACAAATAC
CCAATAGCGGACAAGTTAAAGGTGATTCCCGAGTACGACGTTATCGAACA
GGACCTGTGCAAGCTTTTGTCGCCGGGCTTTCCCAAACAACCACTGCGAG
TCTACAAGTTCGGGTCCCGCATCACAGGCATTGGAAATCGATCCTCGGAC
CTGGACCTCTTCGTCGACATCGGCAACACATTTCACACGTTCGAGCATCG
AGCTTCCAACGCTACCGTCGCCAAGCTGCGGGCTATGAGGAAGTTCTTCT
GCGACAGCGAGGACTGGCGTCTTATTAATTTCATCGAACAGGCTCGCGTG
CCCATCATCAAGACGTGCCACTTACCAACCGGTATCGAGTGCGACATTTG
TCTGAACAGCATGGGCTTTTGCAATACAAATCTGCTCAAATACATATTTG
AGTCACAGCCACTGACTCAATATATGTGCATATATGTAAAGAACTGGCTG
GAGCGCTGCAAGCTAACTGAACAAATATCGACGTACAGCATTACACTGAT
GGTGATTTACTTCCTGCAGCTCCAGGCCCTGCTGCCCCCCATTGCCATGC
TGCAGATAGAGGATGCAGCCAATCAGGCCGTGCTCGTGGGTCCGTGGGTT
GTCAACTTTGCACAAAAATCGTTTAGCGAACTGGGACTGCAGCAATTAAA
GGCGACCGTCCCCGTCATCAAGGGCTTCCTTCGAAACTTCTTTGCGTATT
TCGCCAAATTTGACTACGAGCATTTCTTGGTCTGCCCATATATAGGTCAG
GCTAATGTTGAAATCGCGAAGATTGAGAGGATGCTGCATGCTAGGTATTC
AGCATATGTGTCGGACAACCCTGAATGCTCGATCCAGCTGAAAAAACCGA
TGGTGGTACAGGATCCCATACAACTAAACCACAATGTAACGAAAGCGGTG
ACCAAATATGGACTGCAGACGTTCGTTGACTACTGCCAGCAGACGGCGGA
GCTGCTTGAGGAACCTTCCACCAATTGGCGTCAGCGCTATGCATTTTAAA
AGCTTTCTAGACCAT
BS11641.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:03:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1091-RB | 1683 | CG1091-PB | 1..1683 | 17..1699 | 8415 | 100 | Plus |
| CG1091-RC | 1692 | CG1091-PC | 1..1692 | 17..1699 | 8290 | 99.5 | Plus |
| CG1091-RA | 1518 | CG1091-PA | 1..1518 | 182..1699 | 7590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:03:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1091-RB | 1943 | CG1091-RB | 103..1787 | 16..1700 | 8425 | 100 | Plus |
| CG1091-RC | 1952 | CG1091-RC | 103..1796 | 16..1700 | 8300 | 99.5 | Plus |
| CG1091-RA | 1792 | CG1091-RA | 52..1636 | 116..1700 | 7925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:03:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7084925..7085357 | 647..215 | 2165 | 100 | Minus |
| 3R | 32079331 | 3R | 7084542..7084767 | 873..648 | 1130 | 100 | Minus |
| 3R | 32079331 | 3R | 7083381..7083590 | 1700..1491 | 1050 | 100 | Minus |
| 3R | 32079331 | 3R | 7083688..7083891 | 1496..1293 | 1020 | 100 | Minus |
| 3R | 32079331 | 3R | 7083948..7084124 | 1292..1116 | 885 | 100 | Minus |
| 3R | 32079331 | 3R | 7084183..7084318 | 1115..980 | 680 | 100 | Minus |
| 3R | 32079331 | 3R | 7084375..7084482 | 979..872 | 540 | 100 | Minus |
| 3R | 32079331 | 3R | 7085410..7085512 | 218..116 | 500 | 99 | Minus |
| 3R | 32079331 | 3R | 7085882..7085981 | 115..16 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:03:39 has no hits.
BS11641.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:05 Download gff for
BS11641.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1091-RB | 110..1790 | 17..1697 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:04:48 Download gff for
BS11641.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1091-RB | 104..1784 | 17..1697 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:57 Download gff for
BS11641.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1091-RB | 110..1790 | 17..1697 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:06 Download gff for
BS11641.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1091-RB | 104..1784 | 17..1697 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:06 Download gff for
BS11641.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7083690..7083891 | 1293..1494 | 100 | <- | Minus |
| 3R | 7083948..7084124 | 1116..1292 | 100 | <- | Minus |
| 3R | 7084183..7084318 | 980..1115 | 100 | <- | Minus |
| 3R | 7084375..7084481 | 873..979 | 100 | <- | Minus |
| 3R | 7083384..7083586 | 1495..1697 | 100 | <- | Minus |
| 3R | 7084543..7084767 | 648..872 | 100 | <- | Minus |
| 3R | 7084925..7085357 | 215..647 | 100 | <- | Minus |
| 3R | 7085414..7085512 | 116..214 | 100 | <- | Minus |
| 3R | 7085882..7085980 | 17..115 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:04:48 Download gff for
BS11641.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2909106..2909308 | 1495..1697 | 100 | <- | Minus |
| arm_3R | 2909412..2909613 | 1293..1494 | 100 | <- | Minus |
| arm_3R | 2909670..2909846 | 1116..1292 | 100 | <- | Minus |
| arm_3R | 2909905..2910040 | 980..1115 | 100 | <- | Minus |
| arm_3R | 2910097..2910203 | 873..979 | 100 | <- | Minus |
| arm_3R | 2910265..2910489 | 648..872 | 100 | <- | Minus |
| arm_3R | 2910647..2911079 | 215..647 | 100 | <- | Minus |
| arm_3R | 2911136..2911234 | 116..214 | 100 | <- | Minus |
| arm_3R | 2911604..2911702 | 17..115 | 100 | | Minus |
BS11641.pep Sequence
Translation from 16 to 1698
> BS11641.pep
MRIEPGDSFWTKKAMFSNAERQYFETVRPRKTSLPGSTAPNIAAPVTKAT
KKNKTMAEMMPNKLLYMNPLTMEAHFFLQTLNSVNQTTNPPQLDPHLANL
LERIMVGIESYLDRNPTYVLPQEMAAPGEGVAFVQPQELQTIKRTFSCSS
CSNRIVGTTIAKAVAHLSEQHPKPNPNNQPVQPHPTHQTKQEKKQAQVKA
RQHITVRLPKKARAMIVGEITNVFKDKYPIADKLKVIPEYDVIEQDLCKL
LSPGFPKQPLRVYKFGSRITGIGNRSSDLDLFVDIGNTFHTFEHRASNAT
VAKLRAMRKFFCDSEDWRLINFIEQARVPIIKTCHLPTGIECDICLNSMG
FCNTNLLKYIFESQPLTQYMCIYVKNWLERCKLTEQISTYSITLMVIYFL
QLQALLPPIAMLQIEDAANQAVLVGPWVVNFAQKSFSELGLQQLKATVPV
IKGFLRNFFAYFAKFDYEHFLVCPYIGQANVEIAKIERMLHARYSAYVSD
NPECSIQLKKPMVVQDPIQLNHNVTKAVTKYGLQTFVDYCQQTAELLEEP
STNWRQRYAF*
BS11641.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:22:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1091-PB | 560 | CG1091-PB | 1..560 | 1..560 | 2946 | 100 | Plus |
| CG1091-PC | 563 | CG1091-PC | 1..563 | 1..560 | 2932 | 99.5 | Plus |
| CG1091-PA | 505 | CG1091-PA | 1..505 | 56..560 | 2659 | 100 | Plus |
| mkg-p-PD | 659 | CG7163-PD | 120..384 | 260..529 | 222 | 27.1 | Plus |
| mkg-p-PB | 659 | CG7163-PB | 120..384 | 260..529 | 222 | 27.1 | Plus |
