BS11643.complete Sequence
1502 bp assembled on 2008-08-14
GenBank Submission: FJ638835
> BS11643.complete
GAAGTTATCAGTCGACATGAATTTGGAGCTACTAGAATCTTTCGGACAAA
ACTACCCAGAGGAGTTCGACGGCTCGCTGGATTGCATTTCGTTGGCCGTG
ACGTGTGCCTTTAACAAATACGGAACCCTTTTGGCCGTGGGATGCAATGA
TGGCCGCATTGTAATCTGGGATTTTCTGACGAGGGGCATTGCCAAGATTA
TTTCGGCCCATGTGCATCCCGTTTGCAGTCTCAGTTGGACCAGGAATGGT
CACAAGTTACTTTCAGCTTCCACGGACAACAATGTGTGCATTTGGGATGT
GCTAACCGGCGAACTGGAACACAAGTATAGGTTTCCATCGCCTGTGCTGA
AAGTACAGTTCGATCCCCGAAATGACAACCGACTTTTGGTGTGCCCCATG
CGATATGCCGCCGTTCTTGTAGAGGTCGGCGGAACTCACCGCTGCCTGCC
CTTGGATTCCGATGGCGACTTGAACATCGTGGCTTCTTTCGATCGCAGAG
GCAAACACATCTACACAGGCAACGCCAAGGGAAAAATACTCGTACTGGAT
GTTGAAACCTTTGAGGTGGTCGCCAGTTTTCGCATTATTGTAGGCACCTC
AAGTGCAACGGCTGTAAAAAGCATCGAGTTTGCGAGGCGTGGAGACGCAT
TTCTAATCAACACCTCAGATCGAGTTATTCGTGTTTACGACTCAAAAGAA
ATAATCACTCTAGGCAAAGACGGCGAACCGGAACCTATACAAAAGCTACA
GGACTTGGTCAATAAAACCACCTGGAAAAAGTGCTGCTTCTCCGGTGATG
GGGAGTACATTTGCGCTGGCAGTGCTCGCCAGCATGCTCTTTACATATGG
GAAAAGTCTATTGGAAACCTGGTGAAGATCCTGCATGGCACCAAGGGTGA
GCTGCTCTTGGACGTGGTGTGGCATCCTGTGCGGCCTATTATTGCCAGCA
TTAGCTCCGGACTGGTATCCATTTGGGCCCAAAATCAAGTGGAAAACTGG
TCTGCCTTTGCACCAGATTTCAAGGAATTAGACGAAAACGTAGAGTACGA
AGAGCGGGAGTCAGAGTTCGACATTGCGGACGAAGACAAGTCTGTGGATC
TGAATGCAGACGCGCAACAGGACGAGGAAATTGAGGTAGACGTGCAGAAA
GTGGAGCCGGTGGCTGCCTTTTGCTCCTCCGACGAAGAGGGCGAGGACGA
GAATGCGCTGCAGTTTTTGCCAATGGCACCAGAGGTGGAGGATCCCGAGG
ATGGCTGGACCGGTCAGGACGGACTGGAGCCCAGTGCAGTTATGCTTGGC
CACATGGAACCGCATGACTATGAGGACGACATAATGGCTTCCAAGCGACG
ACGCATGCAGCTCTATGATGTCAGCTTACCTGATGCACCCACTGATGAAA
CGCATCCGCTCATTTCTAGCAAGGCCAGCAAAGATAAACAACAGCCCGTG
GGTGGCAAAAAGGCCGCCGGACGTACCAAGAAATAAAAGCTTTCTAGACC
AT
BS11643.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:44:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbbp5-RA | 1470 | CG5585-PA | 1..1470 | 17..1486 | 7350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:44:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbbp5-RA | 1853 | CG5585-RA | 34..1504 | 17..1487 | 7355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:44:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20346244..20346875 | 1397..766 | 3160 | 100 | Minus |
| 3L | 28110227 | 3L | 20347613..20347835 | 256..34 | 1115 | 100 | Minus |
| 3L | 28110227 | 3L | 20347351..20347560 | 464..255 | 1050 | 100 | Minus |
| 3L | 28110227 | 3L | 20347108..20347289 | 645..464 | 910 | 100 | Minus |
| 3L | 28110227 | 3L | 20322877..20323058 | 645..464 | 895 | 99.5 | Minus |
| 3L | 28110227 | 3L | 20322505..20322644 | 905..766 | 700 | 100 | Minus |
| 3L | 28110227 | 3L | 20346935..20347054 | 765..646 | 600 | 100 | Minus |
| 3L | 28110227 | 3L | 20322704..20322823 | 765..646 | 585 | 99.2 | Minus |
| 3L | 28110227 | 3L | 20346085..20346175 | 1487..1397 | 455 | 100 | Minus |
| 3L | 28110227 | 3L | 20323120..20323202 | 464..382 | 370 | 96.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:44:31 has no hits.
BS11643.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:43:41 Download gff for
BS11643.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5585-RA | 31..1508 | 17..1493 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:14 Download gff for
BS11643.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbbp5-RA | 34..1494 | 17..1477 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:16:34 Download gff for
BS11643.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5585-RA | 31..1491 | 17..1477 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:46 Download gff for
BS11643.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbbp5-RA | 34..1494 | 17..1477 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:46 Download gff for
BS11643.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20347613..20347833 | 36..256 | 100 | <- | Minus |
| 3L | 20347891..20347909 | 17..35 | 100 | | Minus |
| 3L | 20346935..20347054 | 646..765 | 100 | <- | Minus |
| 3L | 20347108..20347289 | 464..645 | 100 | <- | Minus |
| 3L | 20347352..20347558 | 257..463 | 100 | <- | Minus |
| 3L | 20346095..20346174 | 1398..1477 | 100 | <- | Minus |
| 3L | 20346244..20346875 | 766..1397 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:14 Download gff for
BS11643.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20339195..20339274 | 1398..1477 | 100 | <- | Minus |
| arm_3L | 20339344..20339975 | 766..1397 | 100 | <- | Minus |
| arm_3L | 20340035..20340154 | 646..765 | 100 | <- | Minus |
| arm_3L | 20340208..20340389 | 464..645 | 100 | <- | Minus |
| arm_3L | 20340452..20340658 | 257..463 | 100 | <- | Minus |
| arm_3L | 20340713..20340933 | 36..256 | 100 | <- | Minus |
| arm_3L | 20340991..20341009 | 17..35 | 100 | | Minus |
BS11643.pep Sequence
Translation from 16 to 1485
> BS11643.pep
MNLELLESFGQNYPEEFDGSLDCISLAVTCAFNKYGTLLAVGCNDGRIVI
WDFLTRGIAKIISAHVHPVCSLSWTRNGHKLLSASTDNNVCIWDVLTGEL
EHKYRFPSPVLKVQFDPRNDNRLLVCPMRYAAVLVEVGGTHRCLPLDSDG
DLNIVASFDRRGKHIYTGNAKGKILVLDVETFEVVASFRIIVGTSSATAV
KSIEFARRGDAFLINTSDRVIRVYDSKEIITLGKDGEPEPIQKLQDLVNK
TTWKKCCFSGDGEYICAGSARQHALYIWEKSIGNLVKILHGTKGELLLDV
VWHPVRPIIASISSGLVSIWAQNQVENWSAFAPDFKELDENVEYEERESE
FDIADEDKSVDLNADAQQDEEIEVDVQKVEPVAAFCSSDEEGEDENALQF
LPMAPEVEDPEDGWTGQDGLEPSAVMLGHMEPHDYEDDIMASKRRRMQLY
DVSLPDAPTDETHPLISSKASKDKQQPVGGKKAAGRTKK*
BS11643.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:17:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbbp5-PA | 489 | CG5585-PA | 1..489 | 1..489 | 2574 | 100 | Plus |
| CG3909-PA | 331 | CG3909-PA | 55..284 | 39..281 | 169 | 24.3 | Plus |
| CG3436-PC | 347 | CG3436-PC | 60..336 | 29..314 | 156 | 23.1 | Plus |
| CG3436-PA | 347 | CG3436-PA | 60..336 | 29..314 | 156 | 23.1 | Plus |
