BS11652.complete Sequence
2069 bp assembled on 2009-12-07
GenBank Submission: KX800857
> BS11652.complete
GAAGTTATCAGTCGACATGGACATCCTAATCTTTGTGACGGCGGCGGCCC
ATTTGGTCTACACGCCCTTTACGAAAGTGGAGGAGAGCTTCAATCTCCAG
GCCATGCACGACATTCTTTATCTGCGAAACAACTTTACGCAGTACGATCA
CCATGACTATCCGGGCGTGGTTCCACGCACCTTCATCGGCCCATTGGTGG
TGTCCATTATCTCAGCCCCGTTTGTCCTGCTCTTCGAGACCCTTAGCATC
AACAAGTTCTGGGCCCAATATGTAGTGCGCCTTGTCTTGGCTGGGGCCAT
CTCTGTGGCCTGGAACAGCCTACGGCAGGCGGTGACAAAGATTTACGGAG
TTGAGGTCCGCCTGTGGTTCACAGCCATCACTATTACGCAGTTCCACTTC
ATGTTCTACATGACTAGGCCTCTGCCCAATATCTTTGCCCTGCCGATAGT
GCTCTTTGCCATTGCCTATTGGCTACGCGACCAGCACAAGCCATTCATCA
TCTGCTCTGGTATATCCATTCTCGTCTTTCGATCCGAGTTGGCGTTATTT
TTGGGTATTTTGCTGGTGGTGAGCCTCCTACGGCGAAAAGTTTCCATTGA
CGGGCTACTCAAAGTTGCACTGCCGGCGGGCGTCTGCATTTTGGCTGCCA
CAGTGCTGGTGGACTCGTTCTTTTGGCGCCGCCTGCTTTGGCCCGAGGGT
GAGGTGCTATGGTACAACACCGTACTCAATAAGAGCTCCAACTGGGGTAC
CTCGCCTTTTCTATGGTACTTTTACTCCGCCCTGCCACGTGCCATGGGTG
CATCGCTGGTGCTCGTGCCCATCGGCGTCGCATTGGAGCCACGTATTCGG
CCATTGGTCCTGTCGGCTCTCCTCTTTGTCCTTTTGTACTCCATTCTGCC
GCACAAGGAGCTGCGCTTCATCATCTACGTGTTTCCAGTTCTCAACATTG
CTGCGGCTTGCGCATGCCAACGAATTTGGATGAACAGCGCCAAGTCAACG
TGGCATAGCTTTCTGGCGCTCGCCTGTGGAGCCCATCTCCTGCTAAATGT
CTTTATAACGCTCTTCCTGCTTGTCATTTCGGGCACCAACTATCCGGGCG
GAGCAGCCCTCTCCCGATTGCATCGCTTGGAAGCTGGCACCTCAAACGTT
TCCGTTCACATTTCCAACTTGGCCGCCCAGAGCGGCGTGTCGCGTTTTAT
GGAAATAAATAATGAATGGACTTACAGCAAGGACGAGACAATGAACTATA
CCCAGGCGGATTTGGTTGCATACACACATCTTTTGGTCGAGGCGAAGAAC
AAGCAAAACACTGAACTATGGGCATCGCTCCAAAACGAATTCGATACGCT
AGAGTTTATTGACTGCTTCAACAGCATCGGCATTCAATACAATTCTCTGC
TGCCGGTGCGAATAAAGACGAAGCCTTGCATTGGTATACTTAAAAAGAGA
CCAGTGGCTCCAAAAGAGGCATCAAAAACAAAAGAGAAAATAGCAAAAAC
TAAGACATACCCGGTGGAAAAAGAAACGTTATTAGCTCCTGTTAAAGAAT
TTCCAAAAGTGATAGGAGATCCGAAAATGAAATCCAGGTTACAAGTCGAT
GCGGATGATGATGATGGCATCGTGTCCACTGTGGAGGAAATGTCGCTAGA
ACTGGAAACGGATACTGAGCCCCATGCTGGGGCAGAGACCATCGAAACGC
CCTTGAAGGAGATCAATTTCCAGGAGCTGAGAACCCTCGCCTTGGGACAG
GCAACCAAGAAGTCGAGAGCAGCCACCAAGATGAAGATTCGACAAATTAT
CGAGCAGCACTACCGCGCCAAGGGCAAACAAATCGAAAACGACTCCGCAG
AGACCCAAAAAACGCAAGGAAAGGCTGGATTACGGCAATCCGTAAAGTCC
ATCATAAAGCAGGAGAAGATCAAGGAAATGATCGAGCAGATCGCTACGAT
GGATCTGACACGCATCTGCGATTTGGAAAGGACTTCGACCAAAGATTGCT
TAAAACAGGTCATAGACAAAATAGATGACAGCGAGGGTTTGAAATCCAAA
TGAAAGCTTTCTAGACCAT
BS11652.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:22:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8412-RA | 2037 | CG8412-PA | 1..2037 | 17..2053 | 10185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:22:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8412-RA | 2527 | CG8412-RA | 387..2425 | 15..2053 | 10195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:22:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9758134..9759211 | 976..2053 | 5390 | 100 | Plus |
| 3R | 32079331 | 3R | 9757702..9758074 | 603..975 | 1865 | 100 | Plus |
| 3R | 32079331 | 3R | 9757253..9757429 | 273..449 | 885 | 100 | Plus |
| 3R | 32079331 | 3R | 9757494..9757650 | 448..604 | 785 | 100 | Plus |
| 3R | 32079331 | 3R | 9757062..9757197 | 140..275 | 680 | 100 | Plus |
| 3R | 32079331 | 3R | 9756877..9757004 | 15..142 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:22:45 has no hits.
BS11652.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:04 Download gff for
BS11652.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8412-RA | 387..2422 | 17..2052 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:12:48 Download gff for
BS11652.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8412-RA | 389..2424 | 17..2052 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:56:53 Download gff for
BS11652.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8412-RA | 387..2422 | 17..2052 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:12 Download gff for
BS11652.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8412-RA | 389..2424 | 17..2052 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:12 Download gff for
BS11652.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9757496..9757649 | 450..603 | 100 | -> | Plus |
| 3R | 9757256..9757429 | 276..449 | 100 | -> | Plus |
| 3R | 9756879..9757004 | 17..142 | 100 | -> | Plus |
| 3R | 9757065..9757197 | 143..275 | 100 | -> | Plus |
| 3R | 9757703..9758074 | 604..975 | 100 | -> | Plus |
| 3R | 9758134..9759210 | 976..2052 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:12:48 Download gff for
BS11652.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5582601..5582726 | 17..142 | 100 | -> | Plus |
| arm_3R | 5582787..5582919 | 143..275 | 100 | -> | Plus |
| arm_3R | 5582978..5583151 | 276..449 | 100 | -> | Plus |
| arm_3R | 5583218..5583371 | 450..603 | 100 | -> | Plus |
| arm_3R | 5583425..5583796 | 604..975 | 100 | -> | Plus |
| arm_3R | 5583856..5584932 | 976..2052 | 100 | | Plus |
BS11652.pep Sequence
Translation from 16 to 2052
> BS11652.pep
MDILIFVTAAAHLVYTPFTKVEESFNLQAMHDILYLRNNFTQYDHHDYPG
VVPRTFIGPLVVSIISAPFVLLFETLSINKFWAQYVVRLVLAGAISVAWN
SLRQAVTKIYGVEVRLWFTAITITQFHFMFYMTRPLPNIFALPIVLFAIA
YWLRDQHKPFIICSGISILVFRSELALFLGILLVVSLLRRKVSIDGLLKV
ALPAGVCILAATVLVDSFFWRRLLWPEGEVLWYNTVLNKSSNWGTSPFLW
YFYSALPRAMGASLVLVPIGVALEPRIRPLVLSALLFVLLYSILPHKELR
FIIYVFPVLNIAAACACQRIWMNSAKSTWHSFLALACGAHLLLNVFITLF
LLVISGTNYPGGAALSRLHRLEAGTSNVSVHISNLAAQSGVSRFMEINNE
WTYSKDETMNYTQADLVAYTHLLVEAKNKQNTELWASLQNEFDTLEFIDC
FNSIGIQYNSLLPVRIKTKPCIGILKKRPVAPKEASKTKEKIAKTKTYPV
EKETLLAPVKEFPKVIGDPKMKSRLQVDADDDDGIVSTVEEMSLELETDT
EPHAGAETIETPLKEINFQELRTLALGQATKKSRAATKMKIRQIIEQHYR
AKGKQIENDSAETQKTQGKAGLRQSVKSIIKQEKIKEMIEQIATMDLTRI
CDLERTSTKDCLKQVIDKIDDSEGLKSK*
BS11652.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:12:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8412-PA | 678 | CG8412-PA | 1..678 | 1..678 | 3467 | 100 | Plus |
