Clone Sequence Records
BS11653.3prime Sequence
480 bp (480 high quality bases) assembled on 2006-06-16
> BS11653.3prime
ATGGTCTAGAAAGCTTTTACGCGGTCTCCATGGGCTGGGCGGCGGTCTCC
TCGGTGTACTTGCCCTTATCCTTGCCGAGAGCGGCCAGACGACCCTTGCC
GCGACGCTCCAGGATGGCCTTGCGGTCCTTGTCGAGCTTCAGCTTGACGA
TCAGCACCTTGCTGGGATGGATGCCCACGTAGACGTTGGTGCCGTTGGCG
TTCTCGCGCTGGATCTTCTCGACGTAGACGACGAACTTTTTGCGGTAGGC
CTGGACCACCTTGCCCACCTGGTTGCCCTTGAAGTGGCCGCGGATCACCT
GGACCTCATCGTCGCGGCGGATGGGCATGGAACGCACATTGTACTTCTGG
CGCAGCTCCTTGGAGAGGGGAGCGGACATGAGGCGCCTGCGAATGTGGGA
GGGAGCCTGGAAGTGACGCTTGCGGTTCTTCCTGCGCGACGACGACACGA
ACGGGTTCTGTTTCATGTCGACTGATAACT
BS11653.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:57:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6846-PA | 450 | RpL26-RA | 1..450 | 466..17 | 2250 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:29:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL26-RB | 652 | CG6846-RB | 55..505 | 466..16 | 2255 | 100 | Minus |
| RpL26-RA | 648 | CG6846-RA | 51..501 | 466..16 | 2255 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:29:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18899320..18899770 | 466..16 | 2255 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:29:29 has no hits.
BS11653.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:44 Download gff for
BS11653.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6846-PA | 1..450 | 17..466 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:37:31 Download gff for
BS11653.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL26-RA | 45..501 | 16..473 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:47:10 Download gff for
BS11653.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL26-RA | 45..501 | 16..473 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:47:10 Download gff for
BS11653.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18899314..18899770 | 16..473 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:37:31 Download gff for
BS11653.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18892414..18892870 | 16..473 | 99 | | Minus |
BS11653.complete Sequence
482 bp assembled on 2009-02-12
> BS11653.complete
GAAGTTATCAGTCGACATGAAACAGAACCCGTTCGTGTCGTCGTCGCGCA
GGAAGAACCGCAAGCGTCACTTCCAGGCTCCCTCCCACATTCGCAGGCGC
CTCATGTCCGCTCCCCTCTCCAAGGAGCTGCGCCAGAAGTACAATGTGCG
TTCCATGCCCATCCGCCGCGACGATGAGGTCCAGGTGATCCGCGGCCACT
TCAAGGGCAACCAGGTGGGCAAGGTGGTCCAGGCCTACCGCAAAAAGTTC
GTCGTCTACGTCGAGAAGATCCAGCGCGAGAACGCCAACGGCACCAACGT
CTACGTGGGCATCCATCCCAGCAAGGTGCTGATCGTCAAGCTGAAGCTCG
ACAAGGACCGCAAGGCCATCCTGGAGCGTCGCGGCAAGGGTCGTCTGGCC
GCTCTCGGCAAGGATAAGGGCAAGTACACCGAGGAGACCGCCGCCCAGCC
CATGGAGACCGCGTAAAAGCTTTCTAGACCAT
BS11653.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:54:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL26-RB | 450 | CG6846-PB | 1..450 | 17..466 | 2250 | 100 | Plus |
| RpL26-RA | 450 | CG6846-PA | 1..450 | 17..466 | 2250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:54:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL26-RB | 652 | CG6846-RB | 55..505 | 17..467 | 2255 | 100 | Plus |
| RpL26-RA | 648 | CG6846-RA | 51..501 | 17..467 | 2255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:54:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18899320..18899770 | 17..467 | 2255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:54:25 has no hits.
BS11653.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:51 Download gff for
BS11653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL26-RA | 81..528 | 17..464 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:43:15 Download gff for
BS11653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL26-RA | 51..498 | 17..464 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:53 Download gff for
BS11653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL26-RA | 51..498 | 17..464 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:53 Download gff for
BS11653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18899320..18899767 | 17..464 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:43:15 Download gff for
BS11653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18892420..18892867 | 17..464 | 100 | | Plus |
BS11653.pep Sequence
Translation from 16 to 465
> BS11653.pep
MKQNPFVSSSRRKNRKRHFQAPSHIRRRLMSAPLSKELRQKYNVRSMPIR
RDDEVQVIRGHFKGNQVGKVVQAYRKKFVVYVEKIQRENANGTNVYVGIH
PSKVLIVKLKLDKDRKAILERRGKGRLAALGKDKGKYTEETAAQPMETA*
BS11653.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:52:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL26-PB | 149 | CG6846-PB | 1..149 | 1..149 | 756 | 100 | Plus |
| RpL26-PA | 149 | CG6846-PA | 1..149 | 1..149 | 756 | 100 | Plus |
